Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 2.5e-46 188.3 89 100.0
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 1.9e-38 162.2 80 95.0
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 4.2e-38 161.0 89 85.4
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.6e-37 159.1 79 92.4
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 3.9e-36 154.5 83 83.1
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 8.8e-36 153.3 102 76.5
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 7.4e-35 150.2 80 83.8
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 8.2e-34 146.7 77 84.4
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 1.4e-33 146.0 79 81.0
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 1.8e-33 145.6 83 80.7
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 5.3e-33 144.1 80 80.0
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 7.0e-33 143.7 80 77.5
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 9.1e-33 143.3 89 74.2
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 9.1e-33 143.3 89 74.2
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 9.1e-33 143.3 77 81.8
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 9.1e-33 143.3 79 82.3
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 9.1e-33 143.3 79 82.3
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 1.2e-32 142.9 80 80.0
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.2e-32 142.9 80 80.0
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 1.6e-32 142.5 80 76.2
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 1.6e-32 142.5 82 76.8
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 2.0e-32 142.1 79 79.7
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 2.0e-32 142.1 79 78.5
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 2.0e-32 142.1 79 81.0
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.6e-32 141.7 80 80.0
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.6e-32 141.7 80 80.0
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.5e-32 141.4 79 79.7
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 3.5e-32 141.4 82 75.6
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 5.9e-32 140.6 79 79.7
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 7.7e-32 140.2 86 74.4
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.0e-31 139.8 80 76.2
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 1.3e-31 139.4 77 76.6
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 1.7e-31 139.0 80 75.0
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 2.2e-31 138.7 79 78.5
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 2.9e-31 138.3 78 80.8
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 3.8e-31 137.9 80 75.0
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 3.8e-31 137.9 79 81.0
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 5.0e-31 137.5 80 75.0
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 8.5e-31 136.7 79 77.2
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 8.5e-31 136.7 79 77.2
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 1.1e-30 136.3 79 77.2
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 1.1e-30 136.3 79 73.4
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 1.5e-30 136.0 89 69.7
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.5e-30 135.2 73 83.6
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 3.2e-30 134.8 89 69.7
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 3.2e-30 134.8 79 72.2
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 4.2e-30 134.4 77 79.2
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 5.5e-30 134.0 77 75.3
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.6e-29 132.5 75 76.0
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 3.6e-29 131.3 75 78.7
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 6.1e-29 130.6 77 71.4
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 1.0e-28 129.8 88 68.2
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 1.8e-28 129.0 79 72.2
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 2.3e-28 128.6 74 73.0
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 3.0e-28 128.3 79 73.4
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 3.0e-28 128.3 65 86.2
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 4.0e-28 127.9 89 68.5
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 5.2e-28 127.5 79 70.9
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 1.2e-27 126.3 68 80.9
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 1.5e-27 125.9 83 69.9
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 1.5e-27 125.9 83 66.3
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 2.0e-27 125.6 84 66.7
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 2.0e-27 125.6 81 71.6
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 3.3e-27 124.8 89 66.3
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 4.4e-27 124.4 84 64.3
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 5.7e-27 124.0 89 66.3
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 5.7e-27 124.0 63 85.7
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 7.5e-27 123.6 79 70.9
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 1.3e-26 122.9 82 63.4
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 1.3e-26 122.9 79 69.6
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.3e-26 122.9 79 70.9
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.3e-26 122.9 79 70.9
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 1.7e-26 122.5 79 69.6
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 1.7e-26 122.5 81 63.0
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 2.2e-26 122.1 83 65.1
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 2.2e-26 122.1 81 66.7
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 2.2e-26 122.1 72 70.8
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 2.8e-26 121.7 81 64.2
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 2.8e-26 121.7 84 65.5
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 3.7e-26 121.3 83 63.9
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 3.7e-26 121.3 78 71.8
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 3.7e-26 121.3 68 76.5
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 6.3e-26 120.6 80 65.0
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 8.3e-26 120.2 82 64.6
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 8.3e-26 120.2 84 64.3
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 1.1e-25 119.8 62 83.9
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 1.1e-25 119.8 84 64.3
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 1.1e-25 119.8 84 64.3
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.1e-25 119.8 80 65.0
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.1e-25 119.8 80 65.0
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 1.1e-25 119.8 83 63.9
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 1.1e-25 119.8 79 65.8
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 1.4e-25 119.4 80 66.2
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 1.4e-25 119.4 73 72.6
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 1.4e-25 119.4 73 72.6
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.8e-25 119.0 80 65.0
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.8e-25 119.0 80 65.0
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.8e-25 119.0 63 81.0
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 3.1e-25 118.2 80 63.8
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 3.1e-25 118.2 80 65.0
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 4.1e-25 117.9 75 70.7
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 4.1e-25 117.9 80 63.8
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 5.3e-25 117.5 79 69.6
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 5.3e-25 117.5 80 63.8
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 9.1e-25 116.7 79 65.8
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 9.1e-25 116.7 79 68.4
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 1.2e-24 116.3 80 61.2
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.2e-24 116.3 61 82.0
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 2.0e-24 115.5 71 67.6
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 4.5e-24 114.4 73 63.0
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 5.9e-24 114.0 80 66.2
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 1.0e-23 113.2 92 56.5
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 1.0e-23 113.2 86 55.8
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 2.9e-23 111.7 100 53.0
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 2.9e-23 111.7 74 66.2
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 5.0e-23 110.9 62 75.8
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 1.1e-22 109.8 79 62.0
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 1.1e-22 109.8 86 53.5
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 3.2e-22 108.2 72 65.3
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 4.2e-22 107.8 75 73.3
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 5.5e-22 107.5 52 90.4
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 9.4e-22 106.7 113 46.9
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 2.7e-21 105.1 69 60.9
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 8.0e-21 103.6 57 78.9
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 1.4e-20 102.8 79 55.7
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 1.4e-20 102.8 53 81.1
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 1.8e-20 102.4 79 55.7
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 1.8e-20 102.4 52 82.7
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 2.3e-20 102.1 80 57.5
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 4.0e-20 101.3 55 78.2
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 8.8e-20 100.1 62 69.4
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 1.2e-19 99.8 62 72.6
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 1.5e-19 99.4 71 54.9
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 1.5e-19 99.4 70 58.6
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 2.0e-19 99.0 52 76.9
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 2.6e-19 98.6 80 55.0
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 3.4e-19 98.2 82 57.3
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 3.4e-19 98.2 80 58.8
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 4.4e-19 97.8 68 69.1
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 7.5e-19 97.1 72 61.1
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 9.8e-19 96.7 78 57.7
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.3e-18 96.3 56 73.2
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 1.4e-17 92.8 77 55.8
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 4.1e-17 91.3 97 46.4
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 7.0e-17 90.5 80 55.0
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 5.9e-16 87.4 80 47.5
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 5.9e-16 87.4 56 66.1
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 3.8e-15 84.7 66 50.0
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 3.8e-15 84.7 72 56.9
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 5.0e-15 84.3 41 90.2
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 1.1e-14 83.2 95 45.3
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.9e-14 82.4 63 61.9
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 3.6e-13 78.2 40 82.5
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 3.4e-11 71.6 45 66.7
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 1.7e-10 69.3 59 49.2
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 2.4e-09 65.5 53 58.5
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 3.5e-08 61.6 60 43.3
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 3.5e-08 61.6 56 44.6
Cfa026385 Carpinus fangiana HOM05D004551 ORTHO05D005262 3.9e-07 58.2 103 33.0


User provided reference genes

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