Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 7.3e-237 823.5 428 100.0
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 6.3e-180 634.4 414 80.4
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 1.1e-173 613.6 452 71.7
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 8.8e-166 587.4 444 70.3
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 6.3e-164 581.3 474 67.1
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 8.2e-164 580.9 444 68.9
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 7.0e-163 577.8 474 66.9
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 9.1e-163 577.4 474 66.7
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 1.0e-161 573.9 441 69.4
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 1.3e-161 573.5 455 66.8
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 1.7e-161 573.2 444 68.2
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 2.2e-161 572.8 474 65.2
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 5.0e-161 571.6 441 68.3
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 1.9e-160 569.7 443 66.4
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 1.9e-160 569.7 445 67.9
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 2.5e-160 569.3 439 67.9
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 5.5e-160 568.2 444 66.9
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 5.5e-160 568.2 444 67.3
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.6e-159 566.6 424 70.5
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 3.6e-159 565.5 444 67.6
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 4.7e-159 565.1 444 65.3
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 1.0e-158 563.9 444 66.7
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 1.0e-158 563.9 471 64.5
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 1.4e-158 563.5 446 67.5
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 1.4e-158 563.5 445 67.9
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 1.4e-158 563.5 449 68.2
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 2.3e-158 562.8 425 69.9
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 3.0e-158 562.4 444 65.1
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 5.2e-158 561.6 414 70.8
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 2.0e-157 559.7 457 64.6
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 2.6e-157 559.3 446 66.6
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 2.6e-157 559.3 467 64.5
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 2.6e-157 559.3 444 66.4
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 2.6e-157 559.3 444 66.9
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 4.4e-157 558.5 432 68.1
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 5.7e-157 558.1 444 66.7
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 9.7e-157 557.4 469 63.8
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 9.7e-157 557.4 471 63.5
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 1.7e-156 556.6 446 66.6
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 1.7e-156 556.6 447 66.4
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.7e-156 556.6 473 64.3
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 1.7e-156 556.6 440 66.4
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 2.2e-156 556.2 430 68.4
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 2.2e-156 556.2 444 66.4
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 4.8e-156 555.1 449 66.6
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 4.8e-156 555.1 424 67.9
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 6.3e-156 554.7 446 66.1
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 6.3e-156 554.7 444 66.4
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 6.3e-156 554.7 424 69.1
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 1.1e-155 553.9 446 66.1
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 1.1e-155 553.9 444 65.1
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 1.4e-155 553.5 430 68.1
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 1.4e-155 553.5 444 66.9
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 1.8e-155 553.1 549 57.9
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 2.4e-155 552.7 457 65.2
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 3.1e-155 552.4 434 66.6
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 4.1e-155 552.0 446 65.7
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 4.1e-155 552.0 446 65.7
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 7.0e-155 551.2 446 66.8
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 9.1e-155 550.8 446 66.1
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 9.1e-155 550.8 446 66.1
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 9.1e-155 550.8 459 64.3
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 9.1e-155 550.8 446 66.4
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 1.2e-154 550.4 446 65.9
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 1.6e-154 550.1 451 66.3
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 1.6e-154 550.1 471 63.3
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 1.6e-154 550.1 446 66.4
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 2.0e-154 549.7 449 66.4
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 2.0e-154 549.7 430 67.7
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 2.6e-154 549.3 485 62.7
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 3.5e-154 548.9 462 65.8
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 4.5e-154 548.5 444 66.7
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 1.3e-153 547.0 446 65.5
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 1.7e-153 546.6 450 64.7
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 2.2e-153 546.2 456 63.4
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 2.9e-153 545.8 446 66.4
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 2.9e-153 545.8 446 66.1
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 5.0e-153 545.0 446 65.7
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 5.0e-153 545.0 444 64.4
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 6.5e-153 544.7 425 67.5
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 1.9e-152 543.1 446 65.5
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 2.5e-152 542.7 470 61.3
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 2.5e-152 542.7 444 65.5
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 5.5e-152 541.6 426 67.1
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 2.1e-151 539.7 409 70.2
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 8.0e-151 537.7 448 63.4
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 3.0e-150 535.8 441 65.3
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 2.0e-149 533.1 472 62.3
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 5.7e-149 531.6 446 63.2
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 2.2e-148 529.6 409 68.5
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 3.1e-147 525.8 456 61.8
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 3.1e-147 525.8 429 64.6
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 8.5e-145 517.7 452 62.8
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 4.7e-143 511.9 444 62.4
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 4.7e-143 511.9 399 68.7
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 6.1e-143 511.5 422 64.0
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 9.8e-141 504.2 428 62.1
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 3.3e-136 489.2 420 63.6
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 2.1e-135 486.5 423 61.2
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 3.7e-132 475.7 409 63.3
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 5.4e-131 471.9 427 61.4
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 5.9e-130 468.4 395 64.6
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 4.3e-128 462.2 420 61.0
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 1.0e-126 457.6 385 61.8
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 8.6e-121 438.0 393 62.3
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 1.5e-117 427.2 424 54.0
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 1.9e-107 393.7 360 59.4
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 1.6e-106 390.6 437 51.7
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 6.0e-106 388.7 451 52.3
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 1.4e-102 377.5 316 66.1
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 2.0e-101 373.6 329 60.2
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 1.3e-100 370.9 434 50.9
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 1.5e-96 357.5 394 53.6
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 4.0e-94 349.4 345 57.4
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 2.5e-88 330.1 284 62.3
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.2e-76 290.4 251 62.9
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.1e-75 288.1 202 75.7
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 7.9e-74 282.0 195 74.9
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 7.9e-66 255.4 204 66.7
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 1.5e-64 251.1 218 60.1
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 4.3e-56 223.0 147 75.5
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 4.1e-54 216.5 156 70.5
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 7.7e-53 212.2 216 55.1
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.8e-49 201.1 124 76.6
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 2.3e-41 174.1 472 32.6
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 9.4e-35 152.1 182 49.5
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 2.0e-32 144.4 102 68.6
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 4.5e-29 133.3 99 70.7
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 4.5e-29 133.3 99 70.7
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 3.2e-27 127.1 96 66.7
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 3.0e-25 120.6 101 64.4
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 8.8e-25 119.0 266 33.5
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 2.8e-23 114.0 266 32.3
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 1.5e-19 101.7 90 61.1
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 9.5e-19 99.0 84 59.5
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 3.7e-15 87.0 113 47.8
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 6.3e-15 86.3 87 56.3
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 7.0e-14 82.8 46 73.9
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 7.0e-14 82.8 46 73.9
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 2.0e-13 81.3 61 59.0
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 2.3e-12 77.8 78 55.1
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 3.9e-12 77.0 44 77.3
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 3.9e-12 77.0 44 77.3
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 1.1e-11 75.5 123 41.5
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 1.2e-10 72.0 92 52.2
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 1.6e-10 71.6 81 50.6
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 2.8e-10 70.9 69 58.0
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 3.6e-10 70.5 69 58.0
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 3.6e-10 70.5 64 56.2
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 4.7e-10 70.1 86 48.8
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 1.0e-09 68.9 69 56.5
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 1.0e-09 68.9 69 56.5
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 1.0e-09 68.9 69 56.5
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 1.0e-09 68.9 69 56.5
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 1.0e-09 68.9 69 56.5
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 1.0e-09 68.9 69 56.5
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 1.0e-09 68.9 69 56.5
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 2.3e-09 67.8 64 54.7
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 2.2e-07 61.2 71 53.5
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 2.2e-07 61.2 47 66.0
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 3.7e-07 60.5 166 32.5
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 4.9e-07 60.1 47 68.1
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 1.4e-06 58.5 43 65.1
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 1.4e-06 58.5 39 74.4
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 1.9e-06 58.2 95 36.8
AUR62005065 Chenopodium quinoa HOM05D018411 ORTHO05D021565 3.2e-06 57.4 36 72.2


User provided reference genes

Program Settings