Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 1.2e-86 323.2 164 100.0
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 4.1e-71 271.6 164 81.1
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 5.3e-71 271.2 164 79.3
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 5.3e-71 271.2 164 79.3
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 1.9e-68 262.7 164 78.0
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 4.2e-68 261.5 164 78.0
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 6.1e-67 257.7 161 74.5
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 5.2e-66 254.6 164 74.4
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 8.8e-66 253.8 164 75.0
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 2.8e-64 248.8 164 72.0
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 70.7
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 72.0
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 3.1e-63 245.4 164 71.3
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 5.3e-63 244.6 164 72.0
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 5.3e-63 244.6 164 72.0
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 5.3e-63 244.6 159 72.3
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 5.3e-63 244.6 164 71.3
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 5.3e-63 244.6 164 71.3
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 7.0e-63 244.2 164 70.7
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 9.1e-63 243.8 164 70.7
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 9.1e-63 243.8 164 70.1
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 2.0e-62 242.7 164 69.5
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 2.0e-62 242.7 164 69.5
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 2.0e-62 242.7 164 70.1
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 2.7e-62 242.3 164 70.1
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 3.5e-62 241.9 164 69.5
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 3.5e-62 241.9 164 68.3
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 3.5e-62 241.9 164 68.9
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 4.5e-62 241.5 164 71.3
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 4.5e-62 241.5 164 68.9
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 5.9e-62 241.1 164 71.3
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 7.7e-62 240.7 164 70.1
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 7.7e-62 240.7 164 68.9
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 67.7
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 68.3
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 69.5
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 68.3
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 1.3e-61 240.0 164 68.9
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 1.7e-61 239.6 164 67.7
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 1.7e-61 239.6 164 69.5
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 2.2e-61 239.2 164 68.9
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 2.2e-61 239.2 159 69.2
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 2.2e-61 239.2 162 68.5
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 2.2e-61 239.2 164 69.5
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 68.9
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 67.7
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 5.0e-61 238.0 164 67.1
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 6.5e-61 237.7 164 67.7
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 6.5e-61 237.7 164 68.9
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 1.1e-60 236.9 164 68.9
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.1e-60 236.9 159 69.2
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 1.1e-60 236.9 164 69.5
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 67.1
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 67.1
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 68.3
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 67.1
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 67.7
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.9e-60 236.1 159 69.2
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 2.5e-60 235.7 164 66.5
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 4.2e-60 235.0 164 67.1
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 68.9
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 7.2e-60 234.2 164 67.7
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 7.2e-60 234.2 164 67.7
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 7.2e-60 234.2 164 67.1
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 7.2e-60 234.2 164 64.0
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 1.2e-59 233.4 164 65.9
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 1.2e-59 233.4 164 65.9
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 2.1e-59 232.6 162 66.7
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 3.6e-59 231.9 164 67.7
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 4.7e-59 231.5 164 66.5
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 4.7e-59 231.5 164 69.5
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 4.7e-59 231.5 164 64.0
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 4.7e-59 231.5 164 68.3
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 4.7e-59 231.5 164 67.1
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 4.7e-59 231.5 164 67.1
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 6.1e-59 231.1 164 67.7
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 6.1e-59 231.1 164 63.4
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 6.1e-59 231.1 176 71.0
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 8.0e-59 230.7 164 67.7
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 1.4e-58 229.9 164 63.4
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 1.8e-58 229.6 164 65.2
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 1.8e-58 229.6 164 64.6
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 3.0e-58 228.8 164 65.9
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 3.0e-58 228.8 156 69.2
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 3.0e-58 228.8 164 64.6
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 6.8e-58 227.6 164 64.6
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 8.8e-58 227.3 164 64.0
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 1.2e-57 226.9 173 63.6
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 1.2e-57 226.9 164 66.5
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 4.4e-57 224.9 164 65.2
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 5.7e-57 224.6 164 64.0
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 1.7e-56 223.0 185 60.0
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 1.7e-56 223.0 164 62.2
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 2.2e-56 222.6 164 62.8
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 2.2e-56 222.6 164 65.2
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 3.7e-56 221.9 193 58.0
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 3.7e-56 221.9 164 62.2
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 6.3e-56 221.1 191 57.1
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 6.3e-56 221.1 159 64.2
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 8.3e-56 220.7 164 61.0
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 2.4e-55 219.2 164 62.8
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 4.1e-55 218.4 188 59.0
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 3.5e-54 215.3 164 64.0
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 7.7e-54 214.2 174 60.9
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 1.5e-52 209.9 171 60.8
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 1.9e-52 209.5 162 58.6
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 3.3e-52 208.8 164 60.4
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 7.8e-46 187.6 133 65.4
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 3.8e-45 185.3 132 66.7
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 3.8e-45 185.3 170 55.9
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 3.8e-45 185.3 170 55.9
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 2.8e-43 179.1 164 55.5
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 2.3e-42 176.0 164 52.4
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 4.0e-42 175.3 170 53.5
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 2.9e-40 169.1 221 45.2
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 1.7e-37 159.8 117 68.4
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 1.5e-36 156.8 169 47.9
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 1.2e-35 153.7 97 77.3
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 1.1e-34 150.6 168 49.4
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 1.4e-34 150.2 168 45.2
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 1.9e-31 139.8 122 52.5
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 3.2e-31 139.0 167 49.1
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 1.6e-30 136.7 91 76.9
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 6.0e-30 134.8 94 70.2
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 6.0e-30 134.8 83 80.7
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 1.0e-29 134.0 83 75.9
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 1.5e-28 130.2 82 75.6
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 1.2e-27 127.1 96 59.4
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 5.8e-25 118.2 98 66.3
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 2.9e-24 115.9 152 41.4
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 1.1e-23 114.0 66 77.3
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 5.4e-23 111.7 82 58.5
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 4.0e-18 95.5 127 40.2
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 1.3e-16 90.5 69 56.5
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 2.7e-14 82.8 46 78.3
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 3.5e-14 82.4 53 69.8
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 3.5e-14 82.4 107 40.2
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 3.0e-13 79.3 55 54.5
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 3.0e-13 79.3 47 70.2
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 9.6e-12 74.3 48 75.0
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 9.6e-12 74.3 76 57.9
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 1.4e-10 70.5 54 63.0
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 4.0e-10 68.9 46 58.7
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 4.4e-09 65.5 47 53.2


User provided reference genes

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