Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 0.0e+00 1140.9 574 100.0
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 5.9e-141 505.4 605 48.3
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 4.7e-122 442.6 569 45.5
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 6.3e-119 432.2 590 43.6
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 4.5e-109 399.4 595 42.2
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.9e-107 394.0 605 40.5
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 4.7e-106 389.4 590 41.0
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.6e-104 383.6 589 39.9
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 6.4e-103 379.0 598 38.5
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.6e-101 374.4 600 40.5
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.6e-101 374.4 602 40.5
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 2.0e-101 374.0 581 40.3
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 3.5e-101 373.2 589 39.7
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 1.7e-100 370.9 590 40.5
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 4.3e-99 366.3 594 38.9
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 4.3e-99 366.3 590 39.2
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 5.6e-99 365.9 597 41.0
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 1.2e-98 364.8 599 37.9
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 3.6e-98 363.2 589 39.2
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 8.0e-98 362.1 612 38.6
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 1.1e-97 361.7 597 38.5
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 2.0e-96 357.5 601 36.9
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.6e-96 357.1 671 36.1
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 4.4e-96 356.3 582 38.3
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 2.2e-95 354.0 617 38.9
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 2.9e-95 353.6 596 38.6
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 4.9e-95 352.8 608 37.7
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 4.9e-95 352.8 602 37.0
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 6.4e-95 352.4 599 38.7
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 1.1e-94 351.7 597 38.5
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 1.1e-94 351.7 600 37.3
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 2.7e-93 347.1 592 38.0
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 4.6e-93 346.3 461 46.0
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 7.8e-93 345.5 599 37.7
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 1.5e-91 341.3 591 38.1
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 2.5e-91 340.5 592 37.8
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 4.7e-90 336.3 605 37.4
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.1e-89 335.1 585 36.2
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 5.2e-89 332.8 591 34.5
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 8.9e-89 332.0 591 34.5
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 1.5e-88 331.3 585 35.9
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 2.9e-87 327.0 603 36.2
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 3.7e-87 326.6 588 34.5
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 3.7e-87 326.6 575 37.2
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 4.9e-87 326.2 589 37.0
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 6.4e-87 325.9 585 35.7
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 1.9e-86 324.3 591 35.9
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 4.1e-86 323.2 584 34.9
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 7.1e-86 322.4 571 37.5
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 2.1e-85 320.9 582 34.7
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 2.7e-85 320.5 596 34.2
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 2.7e-85 320.5 590 36.6
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 3.5e-85 320.1 602 36.5
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.5e-85 320.1 583 35.2
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 3.5e-85 320.1 607 36.2
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 1.0e-84 318.5 613 35.4
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.0e-84 318.5 597 35.5
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 1.7e-84 317.8 597 35.5
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 2.3e-84 317.4 601 37.6
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 1.1e-83 315.1 611 35.5
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 2.5e-83 313.9 606 36.1
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 2.5e-83 313.9 614 35.2
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 3.3e-83 313.5 611 34.2
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 4.3e-83 313.2 597 35.3
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 5.6e-83 312.8 583 36.2
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 7.3e-83 312.4 577 34.1
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 9.5e-83 312.0 589 34.6
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 1.8e-81 307.8 587 36.5
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.4e-81 307.4 595 35.1
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 6.8e-81 305.8 586 36.9
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 8.9e-81 305.4 568 37.0
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 6.4e-79 299.3 574 37.1
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 6.4e-79 299.3 611 35.4
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.2e-77 295.0 610 34.9
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.1e-77 294.3 579 33.3
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 3.5e-77 293.5 604 33.6
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 6.0e-77 292.7 569 37.6
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 6.0e-77 292.7 583 34.1
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 7.8e-77 292.4 561 36.0
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.3e-76 291.6 575 36.7
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.3e-76 291.6 605 34.7
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 2.3e-76 290.8 605 34.7
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.9e-76 290.0 478 39.1
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 1.9e-75 287.7 605 34.7
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 4.3e-75 286.6 562 34.7
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 2.1e-74 284.3 611 34.0
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.6e-74 283.5 624 33.8
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.4e-73 280.8 629 33.9
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 2.0e-72 277.7 644 33.1
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 7.6e-72 275.8 524 37.4
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.2e-70 270.4 595 32.6
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 1.6e-69 268.1 527 36.4
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 1.7e-68 264.6 605 31.9
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 2.4e-62 244.2 373 39.4
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.4e-62 244.2 606 31.7
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 4.2e-62 243.4 457 35.9
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 4.2e-62 243.4 617 31.3
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 2.1e-61 241.1 617 31.4
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 1.8e-60 238.0 450 38.7
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 1.1e-59 235.3 663 30.0
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 3.3e-59 233.8 562 29.7
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 5.6e-59 233.0 649 31.6
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 7.6e-56 222.6 374 36.4
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.3e-55 221.9 392 39.0
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 2.9e-55 220.7 367 36.2
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 3.8e-55 220.3 398 34.9
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.4e-54 218.4 403 34.7
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 4.2e-54 216.9 655 29.5
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 1.6e-53 214.9 379 36.7
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 2.7e-53 214.2 624 28.8
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 3.5e-53 213.8 385 37.9
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 9.0e-49 199.1 621 28.2
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.4e-48 197.2 574 28.0
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 5.8e-48 196.4 675 28.0
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 5.8e-48 196.4 675 28.0
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 2.2e-47 194.5 580 28.6
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 2.9e-47 194.1 670 28.5
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.6e-45 186.8 388 33.8
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.1e-41 174.1 344 32.8
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.2e-40 172.2 325 36.3
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 5.7e-35 153.3 435 31.0
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 1.7e-31 141.7 369 31.2
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 3.6e-29 134.0 202 40.6
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 3.9e-28 130.6 369 29.8
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.0e-27 128.3 192 36.5
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 1.8e-25 121.7 149 43.6
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 2.4e-25 121.3 230 36.5
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 1.2e-24 119.0 350 30.3
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 3.4e-24 117.5 311 30.5
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.0e-23 115.9 136 41.9
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 9.4e-22 109.4 235 31.5
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 4.7e-21 107.1 150 40.0
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 8.0e-21 106.3 363 27.8
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 1.8e-20 105.1 130 43.8
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 3.0e-20 104.4 202 33.7
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 3.0e-20 104.4 307 32.2
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 5.2e-20 103.6 431 26.7
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 1.1e-19 102.4 81 54.3
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.7e-19 100.1 142 35.9
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 3.7e-18 97.4 221 35.3
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 6.3e-18 96.7 191 35.6
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 1.4e-17 95.5 202 32.2
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.4e-17 95.5 80 52.5
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 4.1e-17 94.0 84 53.6
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.0e-15 89.4 326 26.4
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 5.0e-15 87.0 78 52.6
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 9.4e-14 82.8 623 23.6
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 3.6e-13 80.9 74 47.3
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 1.4e-09 68.9 75 41.3
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 4.1e-09 67.4 154 35.1
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.3e-09 67.0 46 56.5
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 9.1e-09 66.2 99 36.4
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 4.5e-08 63.9 630 23.2
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 5.0e-07 60.5 99 37.4
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 5.0e-07 60.5 244 27.9
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 5.0e-07 60.5 55 49.1
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 2.5e-06 58.2 42 54.8


User provided reference genes

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