Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 1.1e-104 383.3 188 100.0
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 3.7e-84 315.1 185 81.6
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 4.5e-82 308.1 185 79.5
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 2.2e-81 305.8 185 78.9
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 2.5e-80 302.4 185 77.8
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 2.3e-78 295.8 185 76.8
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 1.1e-72 276.9 185 69.7
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 3.2e-72 275.4 185 69.7
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 3.2e-72 275.4 185 69.7
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 7.2e-72 274.2 185 69.7
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 9.4e-72 273.9 185 69.2
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 8.0e-71 270.8 185 70.8
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 1.2e-69 266.9 185 68.6
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 9.8e-69 263.8 185 69.2
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.8e-67 259.6 185 69.7
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 4.1e-67 258.5 201 66.7
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 5.4e-67 258.1 185 67.6
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 2.0e-66 256.1 185 65.9
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 4.5e-66 255.0 185 67.6
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 3.6e-63 245.4 185 64.9
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 1.8e-62 243.0 185 64.3
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 2.3e-62 242.7 185 64.9
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 1.5e-61 240.0 185 63.8
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 2.0e-61 239.6 185 63.8
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 2.0e-61 239.6 185 64.3
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 4.4e-61 238.4 185 63.8
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 9.8e-61 237.3 185 61.1
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 9.8e-61 237.3 185 62.2
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 1.3e-60 236.9 185 62.2
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 1.7e-60 236.5 185 62.7
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 3.7e-60 235.3 185 62.7
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 4.9e-60 235.0 185 62.2
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 1.4e-59 233.4 166 67.5
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 1.8e-59 233.0 185 62.2
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 1.8e-59 233.0 185 62.7
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 9.2e-59 230.7 182 61.5
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 9.2e-59 230.7 185 59.5
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 9.2e-59 230.7 185 64.3
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 1.2e-58 230.3 190 61.6
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 2.7e-58 229.2 185 61.1
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 2.7e-58 229.2 185 62.7
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 4.5e-58 228.4 185 63.2
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 5.9e-58 228.0 185 60.0
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 7.8e-58 227.6 185 63.2
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 7.8e-58 227.6 185 62.2
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 1.3e-57 226.9 184 62.0
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 1.7e-57 226.5 185 59.5
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 2.9e-57 225.7 185 61.1
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 6.6e-57 224.6 185 60.0
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 6.6e-57 224.6 185 59.5
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 6.6e-57 224.6 185 61.1
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 6.6e-57 224.6 185 61.1
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 6.6e-57 224.6 185 61.1
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 6.6e-57 224.6 185 61.1
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 6.6e-57 224.6 185 61.1
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 8.6e-57 224.2 185 60.0
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.1e-56 223.8 185 63.2
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 1.5e-56 223.4 185 61.1
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.9e-56 223.0 185 59.5
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.9e-56 223.0 184 58.7
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 1.9e-56 223.0 185 61.6
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 2.5e-56 222.6 185 60.5
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.5e-56 222.6 185 61.1
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 4.3e-56 221.9 185 59.5
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 5.6e-56 221.5 185 61.1
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 5.6e-56 221.5 185 60.5
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 5.6e-56 221.5 182 58.8
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 7.3e-56 221.1 185 60.5
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 7.3e-56 221.1 146 71.2
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 7.3e-56 221.1 185 58.9
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 9.5e-56 220.7 185 58.4
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 1.2e-55 220.3 185 58.4
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.6e-55 219.9 184 58.2
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 1.6e-55 219.9 185 61.6
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 1.6e-55 219.9 185 58.4
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 2.1e-55 219.5 185 60.5
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 2.1e-55 219.5 185 63.2
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 2.1e-55 219.5 185 63.8
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 2.8e-55 219.2 185 60.0
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 4.7e-55 218.4 185 59.5
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 6.1e-55 218.0 185 58.9
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 6.1e-55 218.0 185 63.2
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 8.0e-55 217.6 185 58.9
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 8.0e-55 217.6 185 58.9
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 8.0e-55 217.6 185 57.8
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 1.0e-54 217.2 185 61.1
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 1.0e-54 217.2 186 58.6
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 1.8e-54 216.5 185 57.3
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.0e-54 215.7 185 61.6
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 1.5e-53 213.4 169 62.7
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 2.6e-53 212.6 185 60.5
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 3.4e-53 212.2 185 58.9
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 4.4e-53 211.8 185 60.0
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 7.5e-53 211.1 182 61.0
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 7.5e-53 211.1 185 58.9
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 1.3e-52 210.3 185 57.3
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 2.2e-52 209.5 186 56.5
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.9e-52 209.1 185 58.4
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 3.7e-52 208.8 186 60.8
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 3.7e-52 208.8 186 60.8
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 4.9e-52 208.4 185 57.8
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 6.4e-52 208.0 184 59.8
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 6.4e-52 208.0 185 58.9
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 6.4e-52 208.0 185 56.8
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 8.3e-52 207.6 185 54.1
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 1.8e-51 206.5 152 63.8
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 3.2e-51 205.7 185 56.8
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 7.0e-51 204.5 186 55.4
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 1.2e-50 203.8 185 51.9
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 2.7e-50 202.6 206 52.9
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 1.3e-49 200.3 185 59.5
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 5.0e-49 198.4 181 56.4
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.2e-47 193.7 168 60.1
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 1.1e-46 190.7 184 50.0
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 3.1e-46 189.1 156 61.5
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 2.6e-45 186.0 168 58.9
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 2.2e-44 183.0 185 47.6
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 8.3e-44 181.0 185 46.5
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.9e-40 169.9 185 50.3
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 5.6e-40 168.3 150 56.7
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 9.5e-40 167.5 197 47.2
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.8e-38 163.3 185 44.3
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 6.8e-38 161.4 185 46.5
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 5.8e-37 158.3 185 50.3
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 1.3e-36 157.1 187 40.6
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 8.6e-33 144.4 170 50.6
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.5e-32 143.7 157 50.3
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 1.9e-27 126.7 106 62.3
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 4.6e-26 122.1 113 55.8
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 3.9e-25 119.0 100 61.0
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.8e-22 110.2 117 47.9
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 4.4e-21 105.5 167 40.7
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 9.3e-19 97.8 106 47.2
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 6.0e-18 95.1 187 29.9
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 1.0e-17 94.4 169 32.5
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 3.9e-17 92.4 124 40.3
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 1.4e-14 84.0 73 52.1
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 2.4e-14 83.2 65 61.5
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 3.1e-14 82.8 72 56.9
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 9.9e-13 77.8 79 55.7
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 6.0e-10 68.6 177 26.6


User provided reference genes

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