Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 4.7e-133 478.0 266 100.0
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 4.0e-60 235.7 264 57.2
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 5.3e-60 235.3 267 54.3
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 6.9e-60 235.0 264 54.5
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 1.2e-59 234.2 242 56.2
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 2.0e-59 233.4 247 57.1
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.0e-59 233.4 247 57.1
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.0e-59 233.4 247 57.1
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.6e-59 233.0 247 57.1
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 3.4e-59 232.6 247 57.1
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 1.4e-57 227.3 242 56.2
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 1.9e-57 226.9 267 53.2
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 2.4e-57 226.5 246 55.3
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 3.2e-57 226.1 255 53.7
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 1.6e-56 223.8 252 54.8
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.6e-56 223.8 255 53.3
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 3.5e-56 222.6 249 55.8
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 6.0e-56 221.9 242 57.4
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 6.0e-56 221.9 248 56.5
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 7.9e-56 221.5 241 55.2
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 1.0e-55 221.1 248 56.0
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 1.0e-55 221.1 248 56.0
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 1.3e-55 220.7 270 55.6
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 1.3e-55 220.7 265 54.3
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 2.3e-55 219.9 239 55.6
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 3.0e-55 219.5 247 54.7
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 3.9e-55 219.2 233 55.4
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 5.1e-55 218.8 260 52.7
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 5.1e-55 218.8 270 51.5
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 1.1e-54 217.6 242 55.8
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 1.1e-54 217.6 243 55.6
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 1.5e-54 217.2 266 54.5
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 2.5e-54 216.5 267 52.8
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 2.5e-54 216.5 220 56.8
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 7.4e-54 214.9 238 55.0
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 3.7e-53 212.6 242 55.4
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 3.7e-53 212.6 243 53.9
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 3.7e-53 212.6 242 55.0
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 4.8e-53 212.2 272 51.5
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 8.1e-53 211.5 248 52.8
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 8.1e-53 211.5 244 54.1
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 1.1e-52 211.1 267 51.7
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 1.4e-52 210.7 220 57.7
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.4e-52 210.7 247 53.4
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 1.4e-52 210.7 261 52.1
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 1.8e-52 210.3 271 55.4
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 1.8e-52 210.3 247 53.0
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 2.4e-52 209.9 266 51.5
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 5.3e-52 208.8 263 51.3
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 3.4e-51 206.1 242 55.4
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 3.4e-51 206.1 213 56.8
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 3.4e-51 206.1 243 53.9
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 3.4e-51 206.1 213 58.2
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 9.9e-51 204.5 229 54.1
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 9.9e-51 204.5 308 47.1
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.9e-50 203.0 234 53.0
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 2.9e-50 203.0 245 53.1
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 3.8e-50 202.6 175 64.6
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 6.4e-50 201.8 229 53.7
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 4.2e-49 199.1 249 48.2
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 9.3e-49 198.0 225 53.3
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 3.5e-48 196.1 227 54.2
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 4.6e-48 195.7 241 52.7
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 6.0e-48 195.3 193 57.0
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 1.3e-47 194.1 252 50.8
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 1.8e-47 193.7 293 46.8
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 2.3e-47 193.4 252 48.4
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 8.7e-47 191.4 242 49.2
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 1.9e-46 190.3 235 51.1
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 5.6e-46 188.7 252 49.2
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 1.3e-45 187.6 235 47.7
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 1.6e-45 187.2 236 50.0
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 1.6e-45 187.2 218 54.1
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 1.6e-45 187.2 237 51.5
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 3.7e-45 186.0 261 51.0
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 3.7e-45 186.0 240 50.0
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 4.8e-45 185.7 203 53.7
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 6.2e-45 185.3 181 56.9
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 1.4e-44 184.1 253 47.0
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 2.4e-44 183.3 237 51.5
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 2.4e-44 183.3 176 58.5
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 1.5e-43 180.6 253 49.0
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 4.5e-43 179.1 177 64.4
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 7.6e-43 178.3 217 51.6
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 2.2e-42 176.8 213 54.0
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 2.5e-41 173.3 234 47.0
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 1.6e-40 170.6 184 56.0
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 2.1e-40 170.2 253 46.2
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 2.7e-40 169.9 180 55.0
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 2.7e-40 169.9 180 55.0
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 2.7e-40 169.9 180 55.0
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 2.7e-40 169.9 184 54.3
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 3.5e-40 169.5 186 52.7
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 4.6e-40 169.1 194 53.1
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 6.0e-40 168.7 178 57.9
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 6.0e-40 168.7 222 50.0
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 7.9e-40 168.3 178 57.9
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.3e-39 167.5 225 48.0
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 5.1e-39 165.6 229 46.3
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 1.9e-38 163.7 184 53.3
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 4.3e-38 162.5 229 47.6
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 1.3e-37 161.0 263 45.6
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 2.2e-37 160.2 174 54.6
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 4.8e-37 159.1 422 35.5
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 3.4e-35 152.9 205 47.8
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.7e-34 150.6 206 46.6
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 2.2e-34 150.2 192 50.5
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 1.2e-32 144.4 243 42.0
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 7.9e-32 141.7 181 51.9
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 1.4e-31 141.0 201 44.3
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 6.7e-31 138.7 190 46.3
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 3.3e-30 136.3 184 48.9
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 5.7e-30 135.6 311 35.7
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 1.4e-28 131.0 222 47.3
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 5.9e-27 125.6 184 46.7
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 4.2e-25 119.4 244 37.3
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 2.8e-21 106.7 243 37.0
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 3.7e-21 106.3 215 36.3
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 1.8e-20 104.0 232 36.2
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 2.4e-20 103.6 194 40.2
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 5.0e-18 95.9 128 50.0
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 1.6e-16 90.9 71 62.0
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 3.3e-14 83.2 126 41.3
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 4.4e-14 82.8 126 39.7
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 3.1e-12 76.6 76 59.2
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 7.0e-12 75.5 54 66.7
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 1.2e-11 74.7 58 58.6
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 3.6e-08 63.2 133 38.3
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 5.7e-06 55.8 97 36.1
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 7.5e-06 55.5 141 34.0


User provided reference genes

Program Settings