Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 1.7e-208 729.2 401 100.0
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 2.5e-114 416.4 444 56.3
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 2.0e-111 406.8 449 56.1
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 1.1e-104 384.4 444 53.6
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 3.4e-103 379.4 450 52.7
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 3.4e-103 379.4 449 53.0
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 4.6e-100 369.0 444 52.9
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 4.6e-100 369.0 444 52.9
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 4.6e-100 369.0 446 52.2
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 7.8e-100 368.2 450 52.9
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.7e-99 367.1 441 51.9
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 3.9e-99 365.9 444 51.8
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 5.1e-99 365.5 450 52.7
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 5.1e-99 365.5 443 51.2
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.5e-98 363.2 441 51.2
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 2.5e-98 363.2 441 51.5
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.3e-98 362.5 441 51.2
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 5.6e-98 362.1 447 50.6
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 7.3e-98 361.7 450 52.9
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 1.3e-97 360.9 441 51.2
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 2.8e-97 359.8 441 50.6
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 6.2e-97 358.6 445 51.7
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 8.1e-97 358.2 448 51.6
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.4e-96 357.5 451 51.0
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 2.4e-96 356.7 443 50.3
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 2.4e-96 356.7 442 49.8
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 4.0e-96 355.9 466 49.6
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 5.3e-96 355.5 441 51.2
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 6.9e-96 355.1 441 50.3
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 9.0e-96 354.8 408 55.6
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 1.5e-95 354.0 408 52.7
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 2.0e-95 353.6 448 51.1
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 6.4e-94 348.6 451 49.9
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 3.2e-93 346.3 441 49.7
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 7.1e-93 345.1 442 50.7
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 1.8e-91 340.5 448 48.7
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 3.9e-91 339.3 442 48.4
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 5.1e-91 339.0 407 51.1
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 8.7e-91 338.2 444 48.0
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 1.5e-90 337.4 442 48.4
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 7.4e-90 335.1 421 51.5
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 9.6e-90 334.7 407 51.4
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 1.3e-89 334.3 444 48.6
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 2.8e-89 333.2 442 48.0
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 1.4e-88 330.9 441 47.8
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.8e-88 330.5 449 48.3
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 6.9e-88 328.6 443 46.3
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 6.9e-88 328.6 454 48.7
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 6.9e-88 328.6 404 51.2
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 1.2e-87 327.8 443 46.7
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 1.2e-87 327.8 446 47.8
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 1.5e-87 327.4 443 48.3
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 1.5e-87 327.4 442 48.2
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 2.0e-87 327.0 456 46.9
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 9.9e-87 324.7 403 50.6
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 1.3e-86 324.3 446 48.7
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.3e-86 324.3 418 49.8
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 1.3e-86 324.3 448 49.1
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 1.7e-86 323.9 446 48.9
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 1.7e-86 323.9 441 47.2
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 3.8e-86 322.8 440 46.8
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 4.9e-86 322.4 443 46.5
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 1.1e-85 321.2 441 49.0
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 1.1e-85 321.2 443 47.6
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 1.9e-85 320.5 438 45.9
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 3.2e-85 319.7 444 46.8
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 7.1e-85 318.5 437 49.0
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 2.7e-84 316.6 444 46.4
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 7.9e-84 315.1 442 45.2
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 1.3e-83 314.3 446 45.5
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 1.8e-83 313.9 445 48.3
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 2.3e-83 313.5 439 48.5
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 3.0e-83 313.2 448 48.9
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 3.0e-83 313.2 444 46.8
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 8.7e-83 311.6 442 48.2
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 8.7e-83 311.6 457 47.3
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 1.5e-82 310.8 449 46.5
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 2.5e-82 310.1 442 47.7
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 4.3e-82 309.3 460 44.1
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 1.6e-81 307.4 444 44.6
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 3.7e-81 306.2 441 44.9
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 1.8e-80 303.9 452 46.9
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.4e-78 295.0 348 52.0
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 3.2e-77 293.1 443 44.2
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 1.6e-76 290.8 444 45.7
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.3e-75 287.7 447 44.5
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 1.3e-75 287.7 458 44.8
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.8e-75 287.3 369 50.7
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.8e-75 287.3 369 50.7
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 2.3e-75 287.0 450 43.3
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 2.5e-74 283.5 418 45.5
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 8.2e-73 278.5 343 51.0
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 1.8e-72 277.3 480 42.9
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 2.2e-70 270.4 338 48.5
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 8.5e-70 268.5 354 50.0
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.4e-69 267.7 370 46.8
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 2.1e-68 263.8 447 40.5
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 3.6e-68 263.1 344 50.0
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 1.3e-67 261.2 342 51.2
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.3e-67 260.4 367 47.4
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 7.4e-66 255.4 359 47.9
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.6e-65 254.2 378 43.4
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 7.7e-63 245.4 386 43.0
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 1.1e-61 241.5 452 38.7
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 9.4e-61 238.4 321 48.9
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 3.1e-56 223.4 459 37.9
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 9.1e-56 221.9 452 38.3
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 6.5e-54 215.7 387 40.1
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 4.2e-53 213.0 202 60.9
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 1.6e-44 184.5 240 48.8
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 1.8e-43 181.0 358 36.6
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 4.0e-43 179.9 275 43.6
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 9.7e-42 175.3 267 43.1
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 6.3e-41 172.6 238 47.1
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.1e-40 171.8 224 50.9
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 6.1e-36 156.0 360 38.3
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 1.5e-34 151.4 267 39.7
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 7.5e-34 149.1 334 38.0
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 5.4e-32 142.9 364 33.0
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 1.2e-31 141.7 286 42.7
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 1.0e-30 138.7 369 33.9
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 2.3e-30 137.5 196 43.4
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.9e-29 134.4 286 38.5
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 3.7e-25 120.2 164 47.0
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 4.1e-24 116.7 441 28.1
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 9.2e-24 115.5 452 28.3
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 2.9e-22 110.5 140 50.0
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 5.0e-22 109.8 161 42.9
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 5.6e-21 106.3 127 51.2
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 2.3e-19 100.9 68 80.9
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.3e-17 95.1 180 37.8
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 3.3e-13 80.5 107 52.3
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.6e-12 78.2 59 71.2
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 4.0e-11 73.6 136 41.9
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 1.2e-10 72.0 82 51.2
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 9.8e-10 68.9 92 45.7
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 1.7e-09 68.2 91 42.9
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 2.9e-09 67.4 135 39.3
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 2.0e-07 61.2 173 34.7
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.0e-07 59.7 156 34.0


User provided reference genes

Program Settings