Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_46.g18668 Utricularia gibba HOM05D002214 ORTHO05D005113 2.0e-39 165.2 81 100.0
Cc02_g28810 Coffea canephora HOM05D002214 ORTHO05D005113 1.5e-13 79.3 69 63.8
Psat5g212520 Pisum sativum HOM05D002214 ORTHO05D005113 1.5e-13 79.3 69 60.9
SalBow6G0878 Salvia bowleyana HOM05D002214 ORTHO05D005113 3.3e-13 78.2 66 63.6
PGR031G1630 Punica granatum HOM05D002214 ORTHO05D005113 5.6e-13 77.4 69 60.9
Ciclev10032739m.g Citrus clementina HOM05D002214 ORTHO05D005113 7.3e-13 77.0 69 60.9
unitig_37.g12366 Utricularia gibba HOM05D002214 ORTHO05D005113 7.3e-13 77.0 68 61.8
SGA_v2.0_scaffold119G32765 Striga asiatica HOM05D002214 ORTHO05D005113 1.2e-12 76.3 69 59.4
Ca_27724_v3 Cicer arietinum L. HOM05D002214 ORTHO05D005113 1.6e-12 75.9 69 59.4
Lalb_Chr04g0263831 Lupinus albus HOM05D002214 ORTHO05D005113 1.6e-12 75.9 69 59.4
Glyma.04G142300 Glycine max HOM05D002214 ORTHO05D005113 2.1e-12 75.5 66 60.6
Glyma.11G159648 Glycine max HOM05D002214 ORTHO05D005113 2.1e-12 75.5 66 60.6
Lj9A641T66 Lonicera japonica HOM05D002214 ORTHO05D005113 2.1e-12 75.5 66 60.6
Peaxi162Scf00071g01032 Petunia axillaris HOM05D002214 ORTHO05D005113 2.1e-12 75.5 66 59.1
CSS0031731 Camellia sinensis var. sinensis HOM05D002214 ORTHO05D005113 4.7e-12 74.3 66 60.6
HanXRQChr03g0082771 Helianthus annuus HOM05D002214 ORTHO05D005113 4.7e-12 74.3 69 58.0
TAR623G1010 Trochodendron aralioides HOM05D002214 ORTHO05D005113 4.7e-12 74.3 69 55.1
VMungo1127G0768 Vigna mungo HOM05D002214 ORTHO05D005113 4.7e-12 74.3 66 59.1
Aqoxy1G00322 Aquilegia oxysepala HOM05D002214 ORTHO05D005113 6.2e-12 73.9 66 56.1
Hma1.2p1_2740F.1_g327740 Hydrangea macrophylla HOM05D002214 ORTHO05D005113 6.2e-12 73.9 66 57.6
Oeu047606.1 Olea europaea HOM05D002214 ORTHO05D005113 6.2e-12 73.9 66 60.6
TPR.G14549 Trifolium pratense HOM05D002214 ORTHO05D005113 6.2e-12 73.9 68 60.3
Eucgr.J01208 Eucalyptus grandis HOM05D002214 ORTHO05D005113 8.1e-12 73.6 66 60.6
Nn7g36334 Nelumbo nucifera HOM05D002214 ORTHO05D007367 8.1e-12 73.6 69 60.9
Nitab4.5_0000087g0120 Nicotiana tabacum HOM05D002214 ORTHO05D005113 8.1e-12 73.6 66 59.1
Nitab4.5_0001676g0100 Nicotiana tabacum HOM05D002214 ORTHO05D005113 8.1e-12 73.6 66 59.1
THA.LOC104809846 Tarenaya hassleriana HOM05D002214 ORTHO05D005113 8.1e-12 73.6 69 56.5
Cpa.g.sc125.49 Carica papaya HOM05D002214 ORTHO05D005113 1.1e-11 73.2 69 58.0
Medtr3g034200 Medicago truncatula HOM05D002214 ORTHO05D005113 1.1e-11 73.2 68 60.3
Nn2g15193 Nelumbo nucifera HOM05D002214 ORTHO05D005113 1.1e-11 73.2 66 59.1
Atru.chr11.2514 Acer truncatum HOM05D002214 ORTHO05D005113 1.4e-11 72.8 65 60.0
Aqoxy2G02029 Aquilegia oxysepala HOM05D002214 ORTHO05D005113 1.4e-11 72.8 72 54.2
MSTRG.17006 Avicennia marina HOM05D002214 ORTHO05D005113 1.4e-11 72.8 65 61.5
CANSAT80G0460 Cannabis sativa HOM05D002214 ORTHO05D005113 1.4e-11 72.8 68 57.4
CAN.G909.3 Capsicum annuum HOM05D002214 ORTHO05D005113 1.4e-11 72.8 76 50.0
Lsat_1_v5_gn_6_74341 Lactuca sativa HOM05D002214 ORTHO05D005113 1.4e-11 72.8 69 56.5
MBI19_g12816_MAGBIO Magnolia biondii HOM05D002214 ORTHO05D005113 1.4e-11 72.8 66 57.6
QL04p010049 Quercus lobata HOM05D002214 ORTHO05D005113 1.4e-11 72.8 66 59.1
Sp6g30240 Schrenkiella parvula HOM05D002214 ORTHO05D005113 1.4e-11 72.8 69 56.5
Lj3g0001707 Lotus japonicus HOM05D002214 ORTHO05D005113 1.8e-11 72.4 65 60.0
Nitab4.5_0001244g0050 Nicotiana tabacum HOM05D002214 ORTHO05D005113 1.8e-11 72.4 66 57.6
Phvul.011G183200 Phaseolus vulgaris HOM05D002214 ORTHO05D005113 1.8e-11 72.4 65 60.0
Rhsim01G0125000 Rhododendron simsii HOM05D002214 ORTHO05D005113 1.8e-11 72.4 69 55.1
Sabra09G0041400 Salix brachista HOM05D002214 ORTHO05D005113 1.8e-11 72.4 65 60.0
Solyc01g087900.3 Solanum lycopersicum HOM05D002214 ORTHO05D005113 1.8e-11 72.4 66 57.6
Sopen01g034830 Solanum pennellii HOM05D002214 ORTHO05D005113 1.8e-11 72.4 66 57.6
PGSC0003DMG400006777 Solanum tuberosum HOM05D002214 ORTHO05D005113 1.8e-11 72.4 66 57.6
VMungo1080G0077 Vigna mungo HOM05D002214 ORTHO05D005113 1.8e-11 72.4 65 60.0
GSVIVG01032214001 Vitis vinifera HOM05D002214 ORTHO05D005113 1.8e-11 72.4 65 60.0
Dinv07431 Davidia involucrata HOM05D002214 ORTHO05D005113 2.3e-11 72.0 68 58.8
Manes.07G010700 Manihot esculenta HOM05D002214 ORTHO05D005113 2.3e-11 72.0 65 60.0
Manes.10G136000 Manihot esculenta HOM05D002214 ORTHO05D005113 2.3e-11 72.0 65 60.0
TAR633G1565 Trochodendron aralioides HOM05D002214 ORTHO05D005113 2.3e-11 72.0 66 56.1
Cfa010811 Carpinus fangiana HOM05D002214 ORTHO05D005113 3.1e-11 71.6 64 60.9
Haze_03145 Corylus avellana HOM05D002214 ORTHO05D005113 3.1e-11 71.6 64 60.9
Haze_03148 Corylus avellana HOM05D002214 ORTHO05D005113 3.1e-11 71.6 64 60.9
Dinv43403 Davidia involucrata HOM05D002214 ORTHO05D005113 3.1e-11 71.6 63 61.9
HanXRQChr08g0226841 Helianthus annuus HOM05D002214 ORTHO05D005113 3.1e-11 71.6 64 59.4
Phvul.005G035200 Phaseolus vulgaris HOM05D002214 ORTHO05D005113 3.1e-11 71.6 68 58.8
Potri.009G056600 Populus trichocarpa HOM05D002214 ORTHO05D005113 3.1e-11 71.6 65 60.0
Sabra16G0160600 Salix brachista HOM05D002214 ORTHO05D005113 3.1e-11 71.6 65 60.0
Thecc.01G406300 Theobroma cacao HOM05D002214 ORTHO05D005113 3.1e-11 71.6 65 60.0
COL.COLO4_12334 Corchorus olitorius HOM05D000031 ORTHO05D000030 4.0e-11 71.2 65 58.5
Duzib133G1108 Durio zibethinus HOM05D002214 ORTHO05D005113 4.0e-11 71.2 66 59.1
FvH4_7g01790 Fragaria vesca HOM05D002214 ORTHO05D005113 5.2e-11 70.9 69 55.1
FAN03G0770 Fragaria x ananassa HOM05D002214 ORTHO05D005113 5.2e-11 70.9 69 55.1
FAN10G3956 Fragaria x ananassa HOM05D002214 ORTHO05D005113 5.2e-11 70.9 69 55.1
PSO339G1526 Papaver somniferum HOM05D002214 ORTHO05D005113 5.2e-11 70.9 65 56.9
PSO384G1143 Papaver somniferum HOM05D002214 ORTHO05D005113 5.2e-11 70.9 65 56.9
RcHm_v2.0_Chr1g0318401 Rosa chinensis HOM05D002214 ORTHO05D005113 5.2e-11 70.9 70 57.1
BcaC04g24254 Brassica carinata HOM05D002214 ORTHO05D005113 6.8e-11 70.5 69 55.1
ClCG09G004420 Citrullus lanatus HOM05D002214 ORTHO05D005113 6.8e-11 70.5 65 58.5
MELO3C023584.2 Cucumis melo HOM05D002214 ORTHO05D005113 6.8e-11 70.5 65 58.5
CsaV3_7G030720 Cucumis sativus L. HOM05D002214 ORTHO05D005113 6.8e-11 70.5 65 58.5
Migut.B01260 Erythranthe guttata HOM05D002214 ORTHO05D005113 6.8e-11 70.5 65 60.0
Gohir.A11G135400 Gossypium hirsutum HOM05D002214 ORTHO05D005113 6.8e-11 70.5 64 60.9
Sed0009169 Sechium edule HOM05D002214 ORTHO05D005113 6.8e-11 70.5 65 58.5
Sc11g0003930 Simmondsia chinensis HOM05D002214 ORTHO05D005113 6.8e-11 70.5 63 61.9
Sc11g0009030 Simmondsia chinensis HOM05D002214 ORTHO05D005113 6.8e-11 70.5 63 61.9
BcaC04g19081 Brassica carinata HOM05D002214 ORTHO05D005113 8.9e-11 70.1 69 55.1
BolC9t59169H Brassica oleracea HOM05D002214 ORTHO05D005113 8.9e-11 70.1 69 55.1
MD07G1023300 Malus domestica HOM05D002214 ORTHO05D005113 8.9e-11 70.1 65 58.5
Nitab4.5_0008942g0030 Nicotiana tabacum HOM05D002214 ORTHO05D005113 8.9e-11 70.1 66 56.1
Prupe.2G024200 Prunus persica HOM05D002214 ORTHO05D005113 8.9e-11 70.1 65 58.5
DCAR_003226 Daucus carota HOM05D002214 ORTHO05D005113 1.2e-10 69.7 69 55.1
Peaxi162Scf01270g00125 Petunia axillaris HOM05D002214 ORTHO05D005113 1.2e-10 69.7 66 56.1
Ah.10g038600 Amaranthus hybridus HOM05D002214 ORTHO05D005113 1.5e-10 69.3 70 55.7
CDE08G0672 Ceratophyllum demersum HOM05D002214 ORTHO05D005113 1.5e-10 69.3 68 57.4
THA.LOC104819106 Tarenaya hassleriana HOM05D002214 ORTHO05D005113 1.5e-10 69.3 66 57.6
CiPaw.13G008000 Carya illinoinensis HOM05D002214 ORTHO05D005113 2.0e-10 68.9 69 58.0
FAN01G2033 Fragaria x ananassa HOM05D002214 ORTHO05D005113 2.0e-10 68.9 69 53.6
MD02G1300400 Malus domestica HOM05D002214 ORTHO05D005113 2.0e-10 68.9 65 58.5
CiPaw.14G003300 Carya illinoinensis HOM05D002214 ORTHO05D005113 2.6e-10 68.6 65 58.5
Lsat_1_v5_gn_6_17421 Lactuca sativa HOM05D002214 ORTHO05D005113 2.6e-10 68.6 64 56.2
TWI53G0951 Tripterygium wilfordii HOM05D002214 ORTHO05D005113 2.6e-10 68.6 66 57.6
TWI53G1910 Tripterygium wilfordii HOM05D002214 ORTHO05D005113 2.6e-10 68.6 66 57.6
BcaNung04183 Brassica carinata HOM05D002214 ORTHO05D005113 3.4e-10 68.2 65 56.9
BcaNung04185 Brassica carinata HOM05D002214 ORTHO05D005113 3.4e-10 68.2 65 56.9
A02p02180 Brassica napus HOM05D002214 ORTHO05D005113 3.4e-10 68.2 65 56.9
C02p06430 Brassica napus HOM05D002214 ORTHO05D005113 3.4e-10 68.2 65 56.9
BolC2t06589H Brassica oleracea HOM05D002214 ORTHO05D005113 3.4e-10 68.2 65 56.9
Thhalv10014756m.g Eutrema salsugineum HOM05D002214 ORTHO05D005113 3.4e-10 68.2 66 56.1
Potri.001G261800 Populus trichocarpa HOM05D002214 ORTHO05D005113 3.4e-10 68.2 62 61.3
TWI09G0624 Tripterygium wilfordii HOM05D002214 ORTHO05D005113 3.4e-10 68.2 66 56.1
Aa31sc919G10 Aethionema arabicum HOM05D002214 ORTHO05D005113 4.4e-10 67.8 65 56.9
CDE02G0928 Ceratophyllum demersum HOM05D002214 ORTHO05D005113 4.4e-10 67.8 68 57.4
Gohir.D11G141700 Gossypium hirsutum HOM05D002214 ORTHO05D005113 4.4e-10 67.8 62 61.3
Gorai.007G152100 Gossypium raimondii HOM05D002214 ORTHO05D005113 4.4e-10 67.8 62 61.3
ECA233G5526 Erigeron canadensis HOM05D002214 ORTHO05D005113 7.5e-10 67.0 64 56.2
Os04g0635800 Oryza sativa ssp. japonica HOM05D002214 ORTHO05D005113 9.9e-10 66.6 67 59.7
Sed0022614 Sechium edule HOM05D002214 ORTHO05D005113 9.9e-10 66.6 65 55.4
Duzib138G1825 Durio zibethinus HOM05D002214 ORTHO05D005113 1.7e-09 65.9 62 59.7
Migut.N01799 Erythranthe guttata HOM05D002214 ORTHO05D005113 1.7e-09 65.9 66 53.0
MD02G1300500 Malus domestica HOM05D002214 ORTHO05D005113 1.7e-09 65.9 65 56.9
AL6G24400 Arabidopsis lyrata HOM05D002214 ORTHO05D005113 2.2e-09 65.5 66 54.5
AT5G13780 Arabidopsis thaliana HOM05D002214 ORTHO05D005113 2.2e-09 65.5 66 54.5
arahy.Tifrunner.gnm1.ann1.0NW2H0 Arachis hypogaea HOM05D002214 ORTHO05D005113 2.2e-09 65.5 60 56.7
Carub.0006s1196 Capsella rubella HOM05D002214 ORTHO05D005113 2.2e-09 65.5 66 54.5
CARHR199660 Cardamine hirsuta HOM05D002214 ORTHO05D005113 2.2e-09 65.5 66 54.5
arahy.Tifrunner.gnm1.ann1.M3J26F Arachis hypogaea HOM05D002214 ORTHO05D005113 2.9e-09 65.1 59 57.6
Oeu014596.2 Olea europaea HOM05D002214 ORTHO05D005113 2.9e-09 65.1 57 59.6
ATR0322G021 Amborella trichopoda HOM05D002214 ORTHO05D005113 3.7e-09 64.7 62 56.5
Zm00001eb069290 Zea mays HOM05D002214 ORTHO05D005113 3.7e-09 64.7 67 56.7
SEGI_02460 Sequoiadendron giganteum HOM05D002214 ORTHO05D005113 4.9e-09 64.3 69 52.2
EL10Ac2g04370 Beta vulgaris HOM05D002214 ORTHO05D005113 6.4e-09 63.9 64 54.7
vmacro17359 Vaccinium macrocarpon HOM05D002214 ORTHO05D005113 1.1e-08 63.2 66 50.0
SGA_v2.0_scaffold4G02481 Striga asiatica HOM05D002214 ORTHO05D005113 1.4e-08 62.8 57 59.6
DCAR_022372 Daucus carota HOM05D002214 ORTHO05D005113 1.9e-08 62.4 63 52.4
Lj7C576T11 Lonicera japonica HOM05D002214 ORTHO05D005113 3.2e-08 61.6 80 45.0
Zm00001eb431690 Zea mays HOM05D002214 ORTHO05D005113 3.2e-08 61.6 67 55.2
arahy.Tifrunner.gnm1.ann1.13N2B5 Arachis hypogaea HOM05D002214 ORTHO05D005113 5.4e-08 60.8 69 52.2
Pp3c7_5970 Physcomitrium patens HOM05D002214 ORTHO05D005113 2.7e-07 58.5 65 52.3
arahy.Tifrunner.gnm1.ann1.EWEG8C Arachis hypogaea HOM05D002214 ORTHO05D005113 3.5e-07 58.2 59 52.5
arahy.Tifrunner.gnm1.ann1.Y5766G Arachis hypogaea HOM05D002214 ORTHO05D009715 3.5e-07 58.2 63 49.2
arahy.Tifrunner.gnm1.ann1.F9QUKJ Arachis hypogaea HOM05D002214 ORTHO05D005113 7.8e-07 57.0 59 50.8
AagrBONN_evm.TU.Sc2ySwM_368.2201 Anthoceros agrestis HOM05D002214 ORTHO05D005113 1.0e-06 56.6 64 50.0
BcaC08g43425 Brassica carinata HOM05D002214 ORTHO05D005113 1.0e-06 56.6 71 49.3
CBR_g48990 Chara braunii HOM05D002214 ORTHO05D005113 1.3e-06 56.2 55 56.4
Mapoly0014s0153 Marchantia polymorpha HOM05D002214 ORTHO05D005113 1.3e-06 56.2 60 51.7
SMO137G0156 Selaginella moellendorffii HOM05D002214 ORTHO05D005113 2.3e-06 55.5 55 54.5
PSO339G1308 Papaver somniferum HOM05D002214 ORTHO05D005113 8.6e-06 53.5 70 48.6


User provided reference genes

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