Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 4.0e-201 704.5 351 100.0
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 2.1e-88 330.1 374 52.7
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 9.6e-86 321.2 397 49.6
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 1.3e-85 320.9 353 52.7
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 1.0e-74 284.6 302 54.3
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 3.5e-72 276.2 355 47.6
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 5.1e-71 272.3 360 47.8
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 1.1e-70 271.2 360 48.3
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 6.9e-68 261.9 373 44.0
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 3.4e-67 259.6 360 46.1
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 3.4e-67 259.6 368 44.6
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 7.7e-67 258.5 372 45.2
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 7.7e-67 258.5 360 45.8
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 1.0e-66 258.1 356 46.3
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 2.9e-66 256.5 355 45.4
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 3.8e-66 256.1 383 42.3
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 1.4e-65 254.2 359 43.5
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 4.2e-65 252.7 350 45.7
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 5.5e-65 252.3 365 43.3
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 2.1e-64 250.4 356 45.2
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 4.6e-64 249.2 356 45.8
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 2.3e-63 246.9 354 43.2
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 3.9e-63 246.1 355 45.6
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.1e-62 244.6 356 43.3
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 1.5e-62 244.2 359 43.2
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.3e-62 242.7 356 43.0
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 7.4e-62 241.9 356 43.0
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 7.4e-62 241.9 367 40.1
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 2.2e-61 240.4 355 43.1
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 3.7e-61 239.6 367 43.1
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 4.8e-61 239.2 307 47.6
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 8.2e-61 238.4 367 41.4
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 6.9e-60 235.3 358 41.6
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 2.0e-59 233.8 369 42.8
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 1.0e-58 231.5 359 40.7
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 1.0e-58 231.5 355 42.5
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 1.0e-58 231.5 250 51.2
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 1.0e-58 231.5 356 42.1
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 2.2e-58 230.3 369 43.1
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 2.9e-58 229.9 376 40.2
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 3.8e-58 229.6 355 43.4
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 3.2e-57 226.5 360 38.9
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 9.4e-57 224.9 402 39.3
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 9.4e-57 224.9 404 39.9
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 2.7e-56 223.4 311 46.0
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 3.6e-56 223.0 371 40.2
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 3.6e-56 223.0 336 42.9
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 3.6e-56 223.0 366 39.3
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 6.1e-56 222.2 391 40.2
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 6.1e-56 222.2 371 39.9
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 6.1e-56 222.2 316 46.8
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 6.1e-56 222.2 359 42.1
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 7.9e-56 221.9 369 40.1
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 1.4e-55 221.1 380 38.4
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 3.9e-55 219.5 261 47.5
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 1.5e-54 217.6 358 40.8
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 4.4e-54 216.1 358 40.2
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 8.2e-53 211.8 258 46.5
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 8.2e-53 211.8 311 43.1
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 1.1e-52 211.5 374 38.0
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.8e-52 210.7 360 39.2
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.8e-52 210.7 360 39.2
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 1.8e-52 210.7 368 39.1
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 2.4e-52 210.3 374 38.5
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 4.1e-52 209.5 351 38.7
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 1.2e-51 208.0 370 39.2
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 2.6e-51 206.8 368 37.5
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 7.7e-51 205.3 296 43.6
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 1.3e-50 204.5 311 40.8
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 2.2e-50 203.8 323 39.9
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 2.2e-50 203.8 336 41.7
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 6.5e-50 202.2 358 37.7
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 1.9e-49 200.7 360 37.5
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 5.5e-49 199.1 337 38.9
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 5.5e-49 199.1 337 38.9
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 5.5e-49 199.1 319 39.5
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 5.5e-49 199.1 353 38.8
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 6.1e-48 195.7 288 44.4
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 1.8e-47 194.1 394 36.0
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 2.3e-47 193.7 360 36.9
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 3.0e-47 193.4 340 37.6
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 3.0e-47 193.4 351 36.8
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 4.0e-47 193.0 316 38.3
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 5.2e-47 192.6 359 36.8
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 1.5e-46 191.0 337 38.9
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 2.0e-46 190.7 304 41.4
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 5.7e-46 189.1 320 41.6
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 3.7e-45 186.4 340 37.1
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 3.7e-45 186.4 340 37.1
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 1.8e-44 184.1 347 36.6
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 4.5e-43 179.5 320 38.8
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 7.7e-43 178.7 328 38.1
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 1.7e-42 177.6 303 42.2
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 2.9e-42 176.8 171 54.4
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 3.8e-42 176.4 395 34.2
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 1.5e-41 174.5 295 38.3
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 1.6e-40 171.0 324 38.3
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.0e-39 166.8 371 35.0
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 9.8e-38 161.8 248 38.7
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 1.1e-36 158.3 303 34.3
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 1.4e-36 157.9 349 34.7
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 1.8e-36 157.5 259 37.5
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 5.4e-36 156.0 300 36.3
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 7.0e-36 155.6 351 35.9
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 1.2e-35 154.8 308 33.8
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 1.7e-34 151.0 207 43.0
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 5.0e-34 149.4 236 39.8
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 3.2e-33 146.7 324 34.6
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 3.2e-33 146.7 157 49.0
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 5.5e-33 146.0 368 34.5
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 7.2e-33 145.6 353 32.6
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 1.6e-32 144.4 327 32.7
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 3.6e-32 143.3 317 32.2
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 3.6e-32 143.3 164 46.3
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 1.8e-28 131.0 358 31.0
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 4.1e-28 129.8 246 36.6
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 4.1e-28 129.8 235 34.9
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 9.1e-28 128.6 147 42.9
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 1.2e-27 128.3 155 43.2
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 2.0e-27 127.5 147 42.2
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 2.0e-27 127.5 252 37.7
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.0e-26 125.2 319 30.7
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 4.4e-22 109.8 309 27.8
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 9.8e-22 108.6 255 29.8
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 1.9e-17 94.4 158 42.4
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 2.0e-14 84.3 177 31.6
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 4.4e-06 56.6 78 46.2


User provided reference genes

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