Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_37.g12961 Utricularia gibba HOM05D003844 ORTHO05D004534 9.0e-44 179.9 91 100.0
MSTRG.1291 Avicennia marina HOM05D003844 ORTHO05D004534 2.8e-21 105.1 94 57.4
MSTRG.25150 Avicennia marina HOM05D003844 ORTHO05D004534 1.1e-20 103.2 94 57.4
Migut.C00695 Erythranthe guttata HOM05D003844 ORTHO05D004534 1.1e-20 103.2 94 59.6
Oeu009862.2 Olea europaea HOM05D003844 ORTHO05D004534 6.5e-18 94.0 96 54.2
MSTRG.22297 Avicennia marina HOM05D003844 ORTHO05D004534 3.2e-17 91.7 92 54.3
Cc10_g03240 Coffea canephora HOM05D003844 ORTHO05D004534 4.2e-17 91.3 104 51.0
PGSC0003DMG400027853 Solanum tuberosum HOM05D003844 ORTHO05D004534 1.2e-16 89.7 99 48.5
SGA_v2.0_scaffold48G18062 Striga asiatica HOM05D003844 ORTHO05D004534 2.1e-16 89.0 92 53.3
Migut.N00512 Erythranthe guttata HOM05D003844 ORTHO05D004534 3.6e-16 88.2 87 56.3
Solyc04g080020.4 Solanum lycopersicum HOM05D003844 ORTHO05D004534 3.6e-16 88.2 99 47.5
Nitab4.5_0000110g0330 Nicotiana tabacum HOM05D003844 ORTHO05D004534 4.6e-16 87.8 101 51.5
Sopen04g033610 Solanum pennellii HOM05D003844 ORTHO05D004534 6.1e-16 87.4 99 46.5
Peaxi162Scf00057g00625 Petunia axillaris HOM05D003844 ORTHO05D004534 1.8e-15 85.9 93 48.4
SalBow8G1589 Salvia bowleyana HOM05D003844 ORTHO05D004534 1.8e-15 85.9 93 49.5
QL01p055640 Quercus lobata HOM05D003844 ORTHO05D004534 5.1e-15 84.3 79 51.9
Nitab4.5_0003246g0140 Nicotiana tabacum HOM05D003844 ORTHO05D004534 6.7e-15 84.0 101 48.5
Lj4A783T77 Lonicera japonica HOM05D003844 ORTHO05D004534 8.8e-15 83.6 72 58.3
Nn5g29521 Nelumbo nucifera HOM05D003844 ORTHO05D004534 1.9e-14 82.4 97 48.5
SalBow8G5355 Salvia bowleyana HOM05D003844 ORTHO05D004534 3.3e-14 81.6 93 47.3
QL02p007730 Quercus lobata HOM05D003844 ORTHO05D004534 1.3e-13 79.7 79 53.2
SalBow7G3794 Salvia bowleyana HOM05D003844 ORTHO05D004534 1.3e-13 79.7 96 45.8
CANSAT25G0011 Cannabis sativa HOM05D003844 ORTHO05D004534 2.8e-13 78.6 98 42.9
Cfa018432 Carpinus fangiana HOM05D003844 ORTHO05D004534 3.7e-13 78.2 69 55.1
Manes.18G029300 Manihot esculenta HOM05D003844 ORTHO05D004534 3.7e-13 78.2 80 56.2
SGA_v2.0_scaffold374G50217 Striga asiatica HOM05D003844 ORTHO05D004534 6.3e-13 77.4 90 47.8
Lj1g0003038 Lotus japonicus HOM05D003844 ORTHO05D004534 8.2e-13 77.0 93 47.3
Haze_17631 Corylus avellana HOM05D003844 ORTHO05D004534 1.1e-12 76.6 69 55.1
Lsat_1_v5_gn_1_18240 Lactuca sativa HOM05D003844 ORTHO05D004534 1.1e-12 76.6 47 74.5
TAR628G0330 Trochodendron aralioides HOM05D003844 ORTHO05D004534 1.8e-12 75.9 87 48.3
CSS0020057 Camellia sinensis var. sinensis HOM05D003844 ORTHO05D004534 2.4e-12 75.5 93 45.2
arahy.Tifrunner.gnm1.ann1.N96YDH Arachis hypogaea HOM05D003844 ORTHO05D004534 4.1e-12 74.7 101 44.6
PSO541G2169 Papaver somniferum HOM05D003844 ORTHO05D004534 4.1e-12 74.7 96 41.7
PSO675G8298 Papaver somniferum HOM05D003844 ORTHO05D004534 4.1e-12 74.7 96 42.7
Atru.chr13.530 Acer truncatum HOM05D003844 ORTHO05D004534 5.3e-12 74.3 50 74.0
COL.COLO4_26357 Corchorus olitorius HOM05D003844 ORTHO05D004534 5.3e-12 74.3 93 43.0
Dinv36050 Davidia involucrata HOM05D003844 ORTHO05D004534 5.3e-12 74.3 95 44.2
Potri.014G042200 Populus trichocarpa HOM05D003844 ORTHO05D004534 5.3e-12 74.3 97 45.4
CAN.G1126.25 Capsicum annuum HOM05D003844 ORTHO05D004534 9.1e-12 73.6 101 47.5
Aqoxy6G01030 Aquilegia oxysepala HOM05D003844 ORTHO05D004534 1.2e-11 73.2 50 62.0
Ca_09005_v3 Cicer arietinum L. HOM05D003844 ORTHO05D004534 1.2e-11 73.2 94 44.7
MBI16_g28231_MAGBIO Magnolia biondii HOM05D003844 ORTHO05D004534 1.2e-11 73.2 99 44.4
DCAR_020963 Daucus carota HOM05D003844 ORTHO05D004534 1.5e-11 72.8 90 46.7
MD08G1032300 Malus domestica HOM05D003844 ORTHO05D004534 1.5e-11 72.8 88 46.6
Sabra14G0030700 Salix brachista HOM05D003844 ORTHO05D004534 1.5e-11 72.8 98 45.9
Sc02g0006420 Simmondsia chinensis HOM05D003844 ORTHO05D004534 1.5e-11 72.8 101 45.5
CSS0015572 Camellia sinensis var. sinensis HOM05D003844 ORTHO05D004534 2.0e-11 72.4 100 44.0
Ah.11g043250 Amaranthus hybridus HOM05D003844 ORTHO05D004534 2.6e-11 72.0 103 39.8
Gohir.A06G011600 Gossypium hirsutum HOM05D003844 ORTHO05D004534 2.6e-11 72.0 95 42.1
Hma1.2p1_0203F.1_g086610 Hydrangea macrophylla HOM05D003844 ORTHO05D004534 2.6e-11 72.0 100 41.0
MD15G1029000 Malus domestica HOM05D003844 ORTHO05D004534 2.6e-11 72.0 88 46.6
vmacro21621 Vaccinium macrocarpon HOM05D003844 ORTHO05D004534 2.6e-11 72.0 90 46.7
Lj4C43T11 Lonicera japonica HOM05D003844 ORTHO05D004534 3.4e-11 71.6 68 54.4
Thecc.08G023100 Theobroma cacao HOM05D003844 ORTHO05D004534 3.4e-11 71.6 102 44.1
TAR376G1074 Trochodendron aralioides HOM05D003844 ORTHO05D004534 3.4e-11 71.6 87 48.3
VMungo1309G3156 Vigna mungo HOM05D003844 ORTHO05D004534 3.4e-11 71.6 90 46.7
arahy.Tifrunner.gnm1.ann1.HBE6U5 Arachis hypogaea HOM05D003844 ORTHO05D004534 4.5e-11 71.2 101 44.6
CiPaw.16G054500 Carya illinoinensis HOM05D003844 ORTHO05D004534 4.5e-11 71.2 97 43.3
Glyma.04G033600 Glycine max HOM05D003844 ORTHO05D004534 5.9e-11 70.9 92 47.8
Glyma.06G033800 Glycine max HOM05D003844 ORTHO05D004534 5.9e-11 70.9 88 46.6
HanXRQChr09g0268531 Helianthus annuus HOM05D003844 ORTHO05D004534 5.9e-11 70.9 94 38.3
Lalb_Chr22g0355431 Lupinus albus HOM05D003844 ORTHO05D004534 5.9e-11 70.9 88 43.2
Phvul.009G056600 Phaseolus vulgaris HOM05D003844 ORTHO05D004534 5.9e-11 70.9 90 46.7
Actinidia15305 Actinidia chinensis HOM05D003844 ORTHO05D004534 7.7e-11 70.5 52 61.5
FvH4_2g40130 Fragaria vesca HOM05D003844 ORTHO05D004534 7.7e-11 70.5 97 46.4
HPP92_000098 Vanilla planifolia HOM05D003844 ORTHO05D004534 7.7e-11 70.5 81 46.9
EL10Ac1g01762 Beta vulgaris HOM05D003844 ORTHO05D004534 1.0e-10 70.1 110 40.0
Ciclev10001396m.g Citrus clementina HOM05D003844 ORTHO05D004534 1.0e-10 70.1 97 42.3
Gohir.D06G009000 Gossypium hirsutum HOM05D003844 ORTHO05D004534 1.0e-10 70.1 95 43.2
Gorai.010G011800 Gossypium raimondii HOM05D003844 ORTHO05D004534 1.0e-10 70.1 95 43.2
Lalb_Chr23g0266661 Lupinus albus HOM05D003844 ORTHO05D004534 1.0e-10 70.1 89 47.2
Manes.05G162700 Manihot esculenta HOM05D003844 ORTHO05D004534 1.0e-10 70.1 97 42.3
Duzib041G0703 Durio zibethinus HOM05D003844 ORTHO05D004534 1.7e-10 69.3 101 43.6
Duzib093G0973 Durio zibethinus HOM05D003844 ORTHO05D004534 1.7e-10 69.3 101 42.6
Dinv39393 Davidia involucrata HOM05D003844 ORTHO05D004534 2.2e-10 68.9 79 50.6
Lalb_Chr11g0062381 Lupinus albus HOM05D003844 ORTHO05D004534 2.2e-10 68.9 68 55.9
Eucgr.A00496 Eucalyptus grandis HOM05D003844 ORTHO05D004534 2.9e-10 68.6 94 40.4
Rhsim06G0035800 Rhododendron simsii HOM05D003844 ORTHO05D004534 2.9e-10 68.6 95 44.2
TPR.G15768 Trifolium pratense HOM05D003844 ORTHO05D004534 2.9e-10 68.6 89 42.7
TWI56G1194 Tripterygium wilfordii HOM05D003844 ORTHO05D004534 2.9e-10 68.6 96 42.7
DCAR_019512 Daucus carota HOM05D003844 ORTHO05D004534 5.0e-10 67.8 90 43.3
SEGI_22020 Sequoiadendron giganteum HOM05D003844 ORTHO05D004534 6.5e-10 67.4 50 62.0
ClCG08G015280 Citrullus lanatus HOM05D003844 ORTHO05D004534 8.5e-10 67.0 47 59.6
Psat3g033360 Pisum sativum HOM05D003844 ORTHO05D004534 8.5e-10 67.0 95 42.1
Potri.002G134100 Populus trichocarpa HOM05D003844 ORTHO05D004534 8.5e-10 67.0 97 42.3
HanXRQChr02g0040241 Helianthus annuus HOM05D003844 ORTHO05D004534 1.1e-09 66.6 41 70.7
PSO170G0196 Papaver somniferum HOM05D003844 ORTHO05D004534 1.1e-09 66.6 96 38.5
PSO700G0367 Papaver somniferum HOM05D003844 ORTHO05D004534 1.1e-09 66.6 96 38.5
TWI36G0861 Tripterygium wilfordii HOM05D003844 ORTHO05D004534 1.1e-09 66.6 68 54.4
AUR62033852 Chenopodium quinoa HOM05D003844 ORTHO05D004534 1.9e-09 65.9 101 41.6
Ca_13342_v3 Cicer arietinum L. HOM05D003844 ORTHO05D004534 1.9e-09 65.9 89 43.8
Gohir.A01G117200 Gossypium hirsutum HOM05D003844 ORTHO05D004534 1.9e-09 65.9 62 54.8
Lsat_1_v5_gn_4_121720 Lactuca sativa HOM05D003844 ORTHO05D004534 1.9e-09 65.9 47 57.4
RcHm_v2.0_Chr6g0300601 Rosa chinensis HOM05D003844 ORTHO05D004534 1.9e-09 65.9 92 43.5
Sed0006776 Sechium edule HOM05D003844 ORTHO05D004534 1.9e-09 65.9 68 47.1
Hund26589 Selenicereus undatus HOM05D003844 ORTHO05D004534 1.9e-09 65.9 70 50.0
CsaV3_2G028530 Cucumis sativus L. HOM05D003844 ORTHO05D004534 2.5e-09 65.5 91 38.5
VMungo0647G2028 Vigna mungo HOM05D003844 ORTHO05D004534 2.5e-09 65.5 94 43.6
Gohir.D01G105300 Gossypium hirsutum HOM05D003844 ORTHO05D004534 3.2e-09 65.1 80 48.8
Gorai.002G129600 Gossypium raimondii HOM05D003844 ORTHO05D004534 3.2e-09 65.1 80 48.8
Phvul.001G015600 Phaseolus vulgaris HOM05D003844 ORTHO05D004534 3.2e-09 65.1 94 46.8
ATR0733G255 Amborella trichopoda HOM05D003844 ORTHO05D004534 4.2e-09 64.7 93 39.8
TPR.G19519 Trifolium pratense HOM05D003844 ORTHO05D004534 4.2e-09 64.7 94 41.5
AUR62041676 Chenopodium quinoa HOM05D003844 ORTHO05D004534 5.5e-09 64.3 99 42.4
FAN15G3259 Fragaria x ananassa HOM05D003844 ORTHO05D004534 5.5e-09 64.3 98 43.9
FAN20G0087 Fragaria x ananassa HOM05D003844 ORTHO05D004534 5.5e-09 64.3 98 43.9
FAN27G2061 Fragaria x ananassa HOM05D003844 ORTHO05D004534 5.5e-09 64.3 98 43.9
CiPaw.15G074100 Carya illinoinensis HOM05D003844 ORTHO05D004534 7.2e-09 63.9 69 50.7
Psat6g007040 Pisum sativum HOM05D003844 ORTHO05D004534 7.2e-09 63.9 89 40.4
GSVIVG01009661001 Vitis vinifera HOM05D003844 ORTHO05D004534 7.2e-09 63.9 92 42.4
ECA232G4877 Erigeron canadensis HOM05D003844 ORTHO05D004534 9.4e-09 63.5 52 48.1
Prupe.1G382400 Prunus persica HOM05D003844 ORTHO05D004534 9.4e-09 63.5 65 52.3
Lj5g0022337 Lotus japonicus HOM05D003844 ORTHO05D004534 1.2e-08 63.2 89 41.6
MELO3C010927.2 Cucumis melo HOM05D003844 ORTHO05D004534 1.6e-08 62.8 91 36.3
Medtr7g104580 Medicago truncatula HOM05D003844 ORTHO05D004534 1.6e-08 62.8 92 39.1
Gohir.A05G260100 Gossypium hirsutum HOM05D003844 ORTHO05D004534 4.7e-08 61.2 89 41.6
PGR031G2782 Punica granatum HOM05D003844 ORTHO05D004534 6.1e-08 60.8 84 39.3
CDE07G1101 Ceratophyllum demersum HOM05D003844 ORTHO05D004534 1.0e-07 60.1 80 41.2
Eucgr.F01545 Eucalyptus grandis HOM05D003844 ORTHO05D004534 1.0e-07 60.1 44 63.6
ECA247G1868 Erigeron canadensis HOM05D003844 ORTHO05D004534 1.4e-07 59.7 62 50.0
Medtr1g022005 Medicago truncatula HOM05D003844 ORTHO05D004534 1.4e-07 59.7 68 50.0
PGR083G2363 Punica granatum HOM05D003844 ORTHO05D004534 1.8e-07 59.3 43 53.5
SMO116G0301 Selaginella moellendorffii HOM05D003844 ORTHO05D004534 1.8e-07 59.3 47 57.4
Gohir.D05G262000 Gossypium hirsutum HOM05D003844 ORTHO05D004534 1.1e-06 56.6 89 40.4
Gorai.009G273900 Gossypium raimondii HOM05D003844 ORTHO05D004534 1.1e-06 56.6 89 40.4
MBI16_g24677_MAGBIO Magnolia biondii HOM05D003844 ORTHO05D004534 2.6e-06 55.5 92 40.2
Pp3c11_25100 Physcomitrium patens HOM05D003844 ORTHO05D004534 2.6e-06 55.5 54 53.7
Pp3c11_25102 Physcomitrium patens HOM05D003844 ORTHO05D004534 2.6e-06 55.5 54 53.7
Zm00001eb130340 Zea mays HOM05D003844 ORTHO05D004534 4.4e-06 54.7 78 37.2
BolC6t38129H Brassica oleracea HOM05D003844 ORTHO05D004534 5.7e-06 54.3 88 35.2
BcaNung04167 Brassica carinata HOM05D003844 ORTHO05D004534 9.7e-06 53.5 88 34.1
C06p29640 Brassica napus HOM05D003844 ORTHO05D004534 9.7e-06 53.5 88 34.1


User provided reference genes

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