Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 8.5e-128 460.3 224 100.0
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 3.5e-25 119.4 92 60.9
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 1.9e-23 113.6 94 58.5
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 7.4e-23 111.7 92 58.7
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.6e-22 110.5 106 51.9
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 2.8e-22 109.8 90 58.9
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 3.7e-22 109.4 92 59.8
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 4.8e-22 109.0 92 58.7
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 4.8e-22 109.0 92 58.7
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 6.3e-22 108.6 92 57.6
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.4e-21 107.5 92 54.3
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 3.1e-21 106.3 92 58.7
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 3.1e-21 106.3 92 54.3
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 3.1e-21 106.3 176 40.3
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 6.9e-21 105.1 92 55.4
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 1.2e-20 104.4 92 56.5
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 1.5e-20 104.0 92 53.3
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 2.0e-20 103.6 100 56.0
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 2.6e-20 103.2 92 54.3
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 2.6e-20 103.2 92 54.3
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 5.9e-20 102.1 92 54.3
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 5.9e-20 102.1 92 56.5
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 7.6e-20 101.7 92 56.5
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 7.6e-20 101.7 92 54.3
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.0e-19 101.3 92 55.4
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.0e-19 101.3 94 54.3
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 1.0e-19 101.3 94 54.3
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.3e-19 100.9 94 54.3
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 1.7e-19 100.5 92 53.3
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.7e-19 100.5 92 54.3
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.7e-19 100.5 70 64.3
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 1.7e-19 100.5 92 54.3
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.7e-19 100.5 95 55.8
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 2.2e-19 100.1 93 53.8
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 2.2e-19 100.1 89 59.6
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 5.0e-19 99.0 92 53.3
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 6.5e-19 98.6 96 54.2
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 1.4e-18 97.4 92 51.1
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 2.5e-18 96.7 92 54.3
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.5e-18 96.7 92 54.3
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 4.2e-18 95.9 87 57.5
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 5.5e-18 95.5 71 62.0
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 5.5e-18 95.5 97 48.5
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 7.2e-18 95.1 92 52.2
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 7.2e-18 95.1 92 53.3
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 7.2e-18 95.1 83 57.8
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 9.3e-18 94.7 92 52.2
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 9.3e-18 94.7 92 52.2
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 9.3e-18 94.7 90 51.1
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 9.3e-18 94.7 87 56.3
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 1.2e-17 94.4 92 52.2
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 1.6e-17 94.0 92 52.2
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.6e-17 94.0 87 56.3
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 2.1e-17 93.6 97 51.5
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.1e-17 93.6 83 56.6
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 2.7e-17 93.2 69 62.3
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 2.7e-17 93.2 68 64.7
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 2.7e-17 93.2 96 51.0
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 2.7e-17 93.2 92 51.1
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.7e-17 93.2 83 51.8
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 2.7e-17 93.2 88 54.5
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 3.6e-17 92.8 94 50.0
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 3.6e-17 92.8 73 58.9
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 4.6e-17 92.4 94 51.1
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.6e-17 92.4 83 56.6
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 6.1e-17 92.0 92 51.1
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 6.1e-17 92.0 100 52.0
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 7.9e-17 91.7 92 52.2
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 7.9e-17 91.7 89 55.1
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 7.9e-17 91.7 83 54.2
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 7.9e-17 91.7 83 59.0
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 7.9e-17 91.7 92 52.2
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.0e-16 91.3 92 51.1
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 1.0e-16 91.3 68 61.8
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 1.8e-16 90.5 68 60.3
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.8e-16 90.5 69 60.9
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 1.8e-16 90.5 94 53.2
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 1.8e-16 90.5 96 52.1
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.8e-16 90.5 85 54.1
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 1.8e-16 90.5 59 69.5
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 2.3e-16 90.1 94 51.1
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.3e-16 90.1 69 59.4
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 2.3e-16 90.1 65 63.1
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.3e-16 90.1 83 57.8
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.3e-16 90.1 83 57.8
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 3.0e-16 89.7 92 54.3
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 3.0e-16 89.7 90 50.0
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 3.0e-16 89.7 90 50.0
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 3.0e-16 89.7 92 51.1
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 3.0e-16 89.7 92 51.1
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 3.0e-16 89.7 66 65.2
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 3.0e-16 89.7 92 50.0
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 3.9e-16 89.4 68 58.8
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 3.9e-16 89.4 68 58.8
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 3.9e-16 89.4 68 58.8
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 3.9e-16 89.4 83 56.6
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 5.1e-16 89.0 65 61.5
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 5.1e-16 89.0 65 61.5
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 5.1e-16 89.0 92 50.0
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 5.1e-16 89.0 92 48.9
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 5.1e-16 89.0 92 54.3
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 5.1e-16 89.0 65 63.1
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 6.7e-16 88.6 83 54.2
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 8.7e-16 88.2 92 50.0
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 1.1e-15 87.8 72 55.6
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 1.5e-15 87.4 93 50.5
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 1.5e-15 87.4 65 61.5
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 1.5e-15 87.4 68 55.9
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 1.5e-15 87.4 65 61.5
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 1.5e-15 87.4 65 61.5
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.9e-15 87.0 62 69.4
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 1.9e-15 87.0 83 59.0
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 3.3e-15 86.3 69 58.0
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 3.3e-15 86.3 91 49.5
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.3e-15 86.3 80 53.8
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 3.3e-15 86.3 65 60.0
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 4.3e-15 85.9 90 50.0
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 4.3e-15 85.9 53 75.5
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 9.7e-15 84.7 61 65.6
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.6e-14 84.0 84 53.6
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 2.8e-14 83.2 83 50.6
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 3.7e-14 82.8 65 58.5
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 4.8e-14 82.4 64 65.6
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 8.2e-14 81.6 93 49.5
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.4e-13 80.9 65 60.0
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 1.8e-13 80.5 75 56.0
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 5.3e-13 79.0 68 57.4
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 5.3e-13 79.0 71 52.1
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 6.9e-13 78.6 65 55.4
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 9.0e-13 78.2 55 65.5
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 1.2e-12 77.8 93 51.6
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 1.2e-12 77.8 83 50.6
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 1.5e-12 77.4 56 64.3
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 2.0e-12 77.0 57 59.6
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.6e-12 76.6 71 52.1
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 4.5e-12 75.9 56 62.5
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 5.9e-12 75.5 51 70.6
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 1.0e-11 74.7 83 49.4
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 1.3e-11 74.3 52 63.5
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 2.9e-11 73.2 57 64.9
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 2.9e-11 73.2 57 64.9
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 3.8e-11 72.8 69 56.5
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.5e-10 68.9 78 48.7
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 9.4e-10 68.2 60 58.3
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 2.7e-09 66.6 60 56.7
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 2.7e-09 66.6 60 58.3
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.8e-08 63.9 60 55.0
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.0e-08 63.2 43 67.4
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.0e-08 63.2 53 60.4
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 1.7e-06 57.4 61 44.3


User provided reference genes

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