Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 0.0e+00 1471.4 779 100.0
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 8.8e-281 970.3 819 63.9
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 1.4e-273 946.4 819 62.9
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 1.7e-268 929.5 844 61.3
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 8.8e-257 890.6 803 60.9
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 1.2e-256 890.2 842 59.0
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 1.1e-254 883.6 821 59.7
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 2.0e-253 879.4 818 58.8
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 2.7e-253 879.0 819 59.5
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 7.7e-253 877.5 817 58.1
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 3.8e-252 875.2 818 58.6
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 6.1e-250 867.8 817 57.9
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 1.4e-246 856.7 817 56.9
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 2.4e-246 855.9 820 57.0
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 3.1e-246 855.5 786 58.8
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 4.5e-245 851.7 820 57.0
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 2.9e-244 849.0 820 57.4
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 2.9e-244 849.0 820 57.6
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 1.2e-242 843.6 820 56.0
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 1.2e-242 843.6 818 56.6
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 3.6e-242 842.0 818 56.4
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 3.6e-242 842.0 818 56.2
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 2.3e-241 839.3 827 56.5
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 6.8e-241 837.8 820 56.7
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 4.4e-240 835.1 816 56.5
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 2.2e-239 832.8 818 55.9
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 2.4e-238 829.3 818 56.2
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 3.2e-238 828.9 825 56.4
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 5.4e-238 828.2 831 56.4
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 1.2e-237 827.0 817 56.2
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 3.5e-237 825.5 814 54.7
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 5.9e-237 824.7 820 56.7
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 1.3e-236 823.5 815 55.5
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 1.7e-236 823.2 856 54.7
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 2.3e-236 822.8 786 57.9
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 5.0e-236 821.6 814 54.8
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 5.0e-236 821.6 818 55.4
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 9.5e-235 817.4 814 54.4
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 9.5e-235 817.4 818 55.0
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 1.4e-233 813.5 818 55.4
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 1.2e-232 810.4 818 55.3
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 3.4e-232 808.9 819 55.7
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 7.5e-232 807.7 823 54.3
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 3.7e-231 805.4 819 55.2
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 4.9e-231 805.1 822 53.6
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 6.4e-231 804.7 823 54.9
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 4.1e-230 802.0 819 55.1
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 3.9e-228 795.4 821 54.8
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 6.6e-228 794.7 820 53.4
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 1.5e-227 793.5 816 53.7
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 3.3e-227 792.3 821 53.5
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 7.3e-227 791.2 821 53.5
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.6e-226 790.0 820 53.5
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 1.6e-226 790.0 820 53.7
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 2.1e-226 789.6 817 53.2
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 6.2e-226 788.1 820 55.4
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 1.1e-225 787.3 821 53.3
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 1.8e-225 786.6 820 54.1
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 4.0e-225 785.4 820 54.3
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 4.0e-225 785.4 822 54.1
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 4.0e-225 785.4 819 54.0
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 5.8e-224 781.6 824 53.5
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 9.8e-224 780.8 816 52.9
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 6.4e-223 778.1 817 54.5
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 8.3e-223 777.7 816 52.9
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 8.3e-223 777.7 841 52.8
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 1.1e-222 777.3 820 53.0
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 1.1e-222 777.3 826 53.8
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 2.4e-222 776.2 822 53.0
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 9.2e-222 774.2 820 53.5
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 1.6e-221 773.5 830 53.3
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 2.1e-221 773.1 816 53.6
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 7.8e-221 771.2 758 56.7
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 1.0e-220 770.8 822 53.2
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 1.1e-219 767.3 819 52.0
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 5.6e-219 765.0 836 52.8
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 3.6e-218 762.3 815 53.0
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 6.2e-218 761.5 806 53.5
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 1.4e-217 760.4 821 53.6
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 3.1e-217 759.2 863 51.6
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 5.2e-217 758.4 814 52.5
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 2.2e-215 753.1 892 50.4
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 4.1e-214 748.8 815 51.9
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 3.0e-212 742.7 751 54.3
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 1.6e-210 736.9 920 48.7
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 1.1e-209 734.2 831 52.1
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 3.9e-204 715.7 859 49.0
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 3.9e-204 715.7 753 54.1
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 5.6e-203 711.8 822 50.2
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 1.8e-201 706.8 793 51.6
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 1.2e-200 704.1 824 50.0
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.8e-180 637.1 672 53.9
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 6.3e-178 628.6 781 48.5
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 3.4e-176 622.9 873 44.1
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.1e-161 574.7 592 55.4
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 1.0e-151 541.6 666 47.7
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 1.2e-144 518.1 784 40.4
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 6.5e-143 512.3 486 56.6
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 1.7e-138 497.7 849 39.1
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 5.4e-137 492.7 768 40.0
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 2.9e-127 460.3 543 49.0
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 4.7e-125 453.0 627 44.5
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 5.7e-123 446.0 793 35.1
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 1.3e-119 434.9 858 33.8
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 2.2e-114 417.5 779 34.4
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 2.9e-114 417.2 324 68.5
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 4.4e-107 393.3 377 57.0
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 5.4e-105 386.3 391 52.9
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.3e-82 312.0 467 43.7
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 2.3e-79 301.2 250 64.4
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.6e-75 287.7 271 58.7
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 6.7e-71 273.1 310 47.4
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.8e-63 248.4 275 48.4
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 2.0e-59 235.0 239 55.2
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.8e-44 185.3 359 37.6
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 2.0e-43 181.8 899 23.7
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 2.2e-42 178.3 837 23.5
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 4.5e-35 154.1 146 60.3
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 3.8e-34 151.0 115 64.3
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 5.0e-34 150.6 124 60.5
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 7.0e-28 130.2 98 67.3
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 1.0e-26 126.3 211 36.5
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.3e-23 115.2 69 85.5
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 6.8e-23 113.6 190 40.0
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.0e-15 89.7 79 62.0
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 7.5e-14 83.6 134 37.3
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 2.2e-13 82.0 107 46.7
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 1.1e-12 79.7 61 62.3
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 1.1e-12 79.7 61 62.3
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 5.4e-12 77.4 117 41.9
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 3.5e-11 74.7 86 45.3
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 1.5e-09 69.3 111 41.4
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 8.0e-08 63.5 153 34.0
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 8.0e-08 63.5 69 46.4
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 1.5e-06 59.3 47 61.7


User provided reference genes

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