Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 1.1e-152 543.1 259 100.0
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 1.2e-80 303.9 258 56.6
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 1.5e-80 303.5 255 54.9
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 5.8e-80 301.6 270 53.7
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 3.2e-78 295.8 255 54.1
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 2.1e-77 293.1 250 54.8
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 2.7e-77 292.7 247 55.1
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 3.5e-77 292.4 254 53.1
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 3.5e-77 292.4 249 54.2
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 5.1e-76 288.5 253 53.8
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 1.1e-75 287.3 255 53.3
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 2.1e-74 283.1 253 53.0
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 2.1e-74 283.1 253 54.2
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 2.1e-74 283.1 253 53.8
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 2.1e-74 283.1 251 52.2
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 2.8e-74 282.7 252 52.8
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 3.7e-74 282.3 256 53.1
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 4.8e-74 282.0 252 52.4
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 4.8e-74 282.0 253 53.8
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 4.8e-74 282.0 252 52.0
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 4.8e-74 282.0 250 52.0
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 6.2e-74 281.6 254 53.5
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 6.2e-74 281.6 264 52.7
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 8.1e-74 281.2 253 51.8
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 1.4e-73 280.4 247 51.4
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 1.4e-73 280.4 253 53.8
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.8e-73 280.0 253 53.8
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 2.4e-73 279.6 266 50.0
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 2.4e-73 279.6 266 50.0
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 5.3e-73 278.5 253 52.2
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 6.9e-73 278.1 271 50.9
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 9.0e-73 277.7 255 52.5
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 9.0e-73 277.7 253 52.6
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 1.2e-72 277.3 248 52.0
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.2e-72 277.3 268 50.7
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 1.5e-72 276.9 254 52.4
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 2.0e-72 276.6 254 51.6
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 4.5e-72 275.4 249 51.4
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 7.6e-72 274.6 256 50.0
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 9.9e-72 274.2 255 52.5
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 1.7e-71 273.5 271 49.4
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 1.7e-71 273.5 266 48.9
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 2.2e-71 273.1 252 51.2
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 2.2e-71 273.1 258 50.8
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 8.4e-71 271.2 261 48.7
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 1.4e-70 270.4 250 50.4
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 2.5e-70 269.6 229 55.9
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 2.5e-70 269.6 252 50.8
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 2.5e-70 269.6 275 49.5
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 3.2e-70 269.2 253 50.6
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 9.3e-70 267.7 261 49.8
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 2.1e-69 266.5 255 49.0
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 2.7e-69 266.2 255 49.0
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 2.7e-69 266.2 257 48.2
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 4.6e-69 265.4 279 46.2
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.3e-68 263.8 254 48.8
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 1.8e-68 263.5 256 49.6
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 1.8e-68 263.5 266 49.2
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 2.3e-68 263.1 256 49.2
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 3.0e-68 262.7 256 49.6
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 3.9e-68 262.3 256 48.8
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 5.1e-68 261.9 270 46.7
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 8.7e-68 261.2 247 49.4
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 1.5e-67 260.4 244 47.5
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 2.5e-67 259.6 254 49.2
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 4.3e-67 258.8 254 48.0
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 7.4e-67 258.1 250 48.8
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 9.6e-67 257.7 249 48.6
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 1.6e-66 256.9 261 48.7
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 2.1e-66 256.5 250 48.8
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 2.8e-66 256.1 230 53.9
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 2.8e-66 256.1 225 53.8
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 1.4e-65 253.8 275 45.8
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 2.4e-65 253.1 258 46.1
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 3.1e-65 252.7 269 46.5
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 1.5e-64 250.4 256 46.9
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 1.5e-64 250.4 256 46.5
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 2.6e-64 249.6 257 47.5
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 5.8e-64 248.4 266 45.1
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 7.6e-64 248.1 258 47.3
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 1.7e-63 246.9 250 46.8
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 4.9e-63 245.4 256 45.7
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 1.9e-62 243.4 246 47.2
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 3.2e-62 242.7 273 44.7
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 5.5e-62 241.9 258 45.7
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 5.5e-62 241.9 268 45.9
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 7.1e-62 241.5 240 49.2
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 9.3e-62 241.1 267 44.2
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 3.0e-60 236.1 258 43.8
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 3.9e-60 235.7 295 42.4
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 3.9e-60 235.7 230 50.9
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 1.1e-59 234.2 253 44.3
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 1.0e-55 221.1 252 43.3
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 4.2e-54 215.7 258 42.2
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 7.2e-54 214.9 245 43.3
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 9.4e-54 214.5 245 41.6
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 1.2e-53 214.2 245 42.0
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 1.2e-53 214.2 245 43.3
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 2.1e-53 213.4 253 42.3
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 2.1e-53 213.4 255 43.5
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 2.7e-53 213.0 253 41.9
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 3.6e-53 212.6 259 42.1
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 4.6e-53 212.2 245 42.0
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 4.6e-53 212.2 245 42.0
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 6.1e-53 211.8 254 42.5
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 7.9e-53 211.5 245 40.8
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 2.3e-52 209.9 259 41.3
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 3.9e-52 209.1 251 41.4
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 2.8e-50 203.0 258 41.5
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 6.9e-49 198.4 234 41.5
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.5e-48 197.2 246 41.1
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 1.4e-46 190.7 153 52.3
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 5.5e-46 188.7 258 38.4
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 4.7e-45 185.7 229 39.7
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 2.8e-42 176.4 182 45.1
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 6.3e-42 175.3 171 46.8
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 2.0e-40 170.2 260 34.2
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 1.6e-37 160.6 218 40.4
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.6e-37 160.6 180 42.8
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 3.7e-34 149.4 252 35.3
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 2.2e-31 140.2 173 41.0
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 4.2e-30 136.0 218 36.7
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 4.2e-30 136.0 170 40.0
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 7.2e-30 135.2 176 39.2
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 7.2e-30 135.2 169 41.4
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 7.2e-30 135.2 167 42.5
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 3.6e-29 132.9 169 40.2
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 6.1e-29 132.1 170 40.6
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 6.1e-29 132.1 170 40.0
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 8.0e-29 131.7 185 39.5
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 1.0e-28 131.3 169 41.4
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 8.8e-28 128.3 167 41.3
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 1.7e-26 124.0 137 43.1
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 5.3e-25 119.0 151 41.7
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 2.0e-24 117.1 227 36.6
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 2.7e-24 116.7 137 41.6
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.0e-23 114.8 149 38.3
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 1.8e-20 104.0 176 34.7
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 8.8e-20 101.7 154 36.4
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 3.7e-18 96.3 80 53.8
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 8.3e-18 95.1 170 33.5
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 8.3e-18 95.1 170 33.5
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 4.7e-13 79.3 117 38.5
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 1.8e-12 77.4 60 51.7
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 1.8e-12 77.4 60 51.7
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 3.0e-12 76.6 81 43.2
Cre06.g258000 Chlamydomonas reinhardtii HOM05D004840 ORTHO05D005751 1.0e-07 61.6 161 28.0


User provided reference genes

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