Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_37.g12571 Utricularia gibba HOM05D003240 ORTHO05D009426 8.0e-52 207.2 138 100.0
AL3G27700 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 1.1e-11 73.9 76 40.8
BcaNung07375 Brassica carinata HOM05D003240 ORTHO05D009426 1.1e-11 73.9 63 47.6
Sp3g13510 Schrenkiella parvula HOM05D003240 ORTHO05D009426 1.1e-11 73.9 63 47.6
Nitab4.5_0001241g0070 Nicotiana tabacum HOM05D003240 ORTHO05D009426 2.3e-11 72.8 58 51.7
Hma1.2p1_0458F.1_g157060 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.1e-11 72.4 61 52.5
Oeu019313.1 Olea europaea HOM05D003240 ORTHO05D009426 3.1e-11 72.4 106 39.6
Thhalv10022293m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 5.2e-11 71.6 63 46.0
VMungo1080G0324 Vigna mungo HOM05D003240 ORTHO05D009426 8.9e-11 70.9 86 40.7
Medtr2g085370 Medicago truncatula HOM05D003240 ORTHO05D009426 1.2e-10 70.5 63 50.8
Lj3g0021284 Lotus japonicus HOM05D003240 ORTHO05D009426 1.5e-10 70.1 61 52.5
Nitab4.5_0001336g0090 Nicotiana tabacum HOM05D003240 ORTHO05D009426 1.5e-10 70.1 117 35.0
AL1G61490 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 2.0e-10 69.7 63 47.6
Carub.0003s1496 Capsella rubella HOM05D003240 ORTHO05D009426 2.6e-10 69.3 58 46.6
Glyma.12G225100 Glycine max HOM05D003240 ORTHO05D009426 2.6e-10 69.3 89 41.6
BcaB04g20937 Brassica carinata HOM05D000882 ORTHO05D009426 3.4e-10 68.9 59 49.2
Sp1g39680 Schrenkiella parvula HOM05D003240 ORTHO05D009426 3.4e-10 68.9 63 44.4
AT1G53130 Arabidopsis thaliana HOM05D003240 ORTHO05D009426 4.4e-10 68.6 63 47.6
Phvul.005G072700 Phaseolus vulgaris HOM05D003240 ORTHO05D009426 4.4e-10 68.6 63 49.2
BcaC09g48486 Brassica carinata HOM05D003240 ORTHO05D009426 9.8e-10 67.4 53 47.2
CARHR043350 Cardamine hirsuta HOM05D003240 ORTHO05D009426 9.8e-10 67.4 63 44.4
Hma1.2p1_0458F.1_g157080 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 9.8e-10 67.4 62 50.0
Hma1.2p1_0458F.1_g157090 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 9.8e-10 67.4 62 50.0
Carub.0001s4229 Capsella rubella HOM05D003240 ORTHO05D009426 1.3e-09 67.0 63 44.4
Thhalv10012399m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 1.3e-09 67.0 63 44.4
Potri.001G399200 Populus trichocarpa HOM05D003240 ORTHO05D009426 1.3e-09 67.0 106 40.6
A06p01190 Brassica napus HOM05D003240 ORTHO05D009426 1.7e-09 66.6 63 44.4
BraA06t23346Z Brassica rapa HOM05D003240 ORTHO05D009426 1.7e-09 66.6 63 44.4
CiPaw.12G118800 Carya illinoinensis HOM05D003240 ORTHO05D009426 1.7e-09 66.6 63 46.0
Aa31LG10G2000 Aethionema arabicum HOM05D003240 ORTHO05D009426 2.2e-09 66.2 63 44.4
Haze_09433 Corylus avellana HOM05D003240 ORTHO05D009426 2.2e-09 66.2 56 48.2
Duzib213G1023 Durio zibethinus HOM05D003240 ORTHO05D009426 2.2e-09 66.2 58 48.3
BcaB07g33356 Brassica carinata HOM05D003240 ORTHO05D009426 2.9e-09 65.9 63 44.4
CAN.G162.53 Capsicum annuum HOM05D003240 ORTHO05D009426 2.9e-09 65.9 62 46.8
Haze_09435 Corylus avellana HOM05D003240 ORTHO05D009426 2.9e-09 65.9 63 49.2
PGSC0003DMG400012465 Solanum tuberosum HOM05D003240 ORTHO05D009426 3.7e-09 65.5 104 35.6
Sopen07g031280 Solanum pennellii HOM05D003240 ORTHO05D009426 4.9e-09 65.1 104 35.6
TPR.G39028 Trifolium pratense HOM05D003240 ORTHO05D009426 4.9e-09 65.1 61 47.5
BcaC08g43498 Brassica carinata HOM05D003240 ORTHO05D009426 6.4e-09 64.7 63 42.9
C06p08830 Brassica napus HOM05D003240 ORTHO05D009426 6.4e-09 64.7 63 42.9
BolC6t35961H Brassica oleracea HOM05D003240 ORTHO05D017503 6.4e-09 64.7 63 42.9
Cpa.g.sc80.73 Carica papaya HOM05D003240 ORTHO05D009426 6.4e-09 64.7 64 42.2
Medtr2g085360 Medicago truncatula HOM05D003240 ORTHO05D009426 6.4e-09 64.7 63 46.0
Potri.011G118600 Populus trichocarpa HOM05D003240 ORTHO05D009426 6.4e-09 64.7 113 36.3
Sabra16G0261800 Salix brachista HOM05D003240 ORTHO05D009426 6.4e-09 64.7 67 44.8
Prupe.4G180300 Prunus persica HOM05D003240 ORTHO05D009426 8.3e-09 64.3 98 39.8
Sabra11G0103500 Salix brachista HOM05D003240 ORTHO05D009426 8.3e-09 64.3 69 47.8
MD03G1228400 Malus domestica HOM05D003240 ORTHO05D009426 1.1e-08 63.9 71 45.1
Atru.chr2.2486 Acer truncatum HOM05D003240 ORTHO05D009426 1.4e-08 63.5 59 47.5
PGR083G0779 Punica granatum HOM05D003240 ORTHO05D009426 1.9e-08 63.2 65 41.5
SGA_v2.0_scaffold73G24260 Striga asiatica HOM05D003240 ORTHO05D009426 1.9e-08 63.2 69 46.4
TPR.G38961 Trifolium pratense HOM05D003240 ORTHO05D009426 1.9e-08 63.2 55 50.9
CANSAT56G1752 Cannabis sativa HOM05D003240 ORTHO05D009426 3.2e-08 62.4 52 48.1
Ciclev10010456m.g Citrus clementina HOM05D003240 ORTHO05D009426 3.2e-08 62.4 54 44.4
Glyma.13G276200 Glycine max HOM05D003240 ORTHO05D009426 3.2e-08 62.4 106 34.0
Gorai.009G384700 Gossypium raimondii HOM05D003240 ORTHO05D009426 3.2e-08 62.4 65 41.5
Gohir.A04G031760 Gossypium hirsutum HOM05D003240 ORTHO05D009426 4.1e-08 62.0 65 41.5
Gohir.A04G031920 Gossypium hirsutum HOM05D003240 ORTHO05D009426 4.1e-08 62.0 65 41.5
Gohir.D05G352600 Gossypium hirsutum HOM05D003240 ORTHO05D009426 4.1e-08 62.0 65 41.5
Gohir.D05G352700 Gossypium hirsutum HOM05D003240 ORTHO05D009426 4.1e-08 62.0 65 41.5
Migut.M00801 Erythranthe guttata HOM05D003240 ORTHO05D009426 5.4e-08 61.6 73 45.2
FvH4_3g19820 Fragaria vesca HOM05D003240 ORTHO05D009426 7.1e-08 61.2 63 42.9
FAN16G0971 Fragaria x ananassa HOM05D003240 ORTHO05D009426 7.1e-08 61.2 63 42.9
FAN25G3490 Fragaria x ananassa HOM05D003240 ORTHO05D009426 7.1e-08 61.2 63 42.9
Thecc.07G091300 Theobroma cacao HOM05D003240 ORTHO05D009426 7.1e-08 61.2 66 43.9
CSS0038111 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 9.2e-08 60.8 75 38.7
FAN21G1097 Fragaria x ananassa HOM05D003240 ORTHO05D009426 1.2e-07 60.5 63 42.9
Gohir.A04G032100 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.2e-07 60.5 72 43.1
Gohir.D05G352500 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.2e-07 60.5 72 43.1
Gorai.009G384600 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.2e-07 60.5 72 43.1
Gorai.009G384900 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.2e-07 60.5 65 40.0
Gorai.009G385100 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.2e-07 60.5 65 40.0
Gorai.009G385000 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.6e-07 60.1 65 40.0
THA.LOC104818082 Tarenaya hassleriana HOM05D003240 ORTHO05D009426 1.6e-07 60.1 63 41.3
Aqoxy1G02389 Aquilegia oxysepala HOM05D003240 ORTHO05D009426 2.1e-07 59.7 56 42.9
DCAR_013111 Daucus carota HOM05D003240 ORTHO05D009426 2.1e-07 59.7 69 39.1
PSO675G7736 Papaver somniferum HOM05D003240 ORTHO05D009426 2.1e-07 59.7 58 41.4
PSO541G3864 Papaver somniferum HOM05D003240 ORTHO05D009426 2.7e-07 59.3 56 42.9
Prupe.4G180400 Prunus persica HOM05D003240 ORTHO05D009426 2.7e-07 59.3 70 38.6
RcHm_v2.0_Chr5g0033251 Rosa chinensis HOM05D003240 ORTHO05D009426 3.5e-07 58.9 69 37.7
Cc05_g11970 Coffea canephora HOM05D003240 ORTHO05D009426 7.8e-07 57.8 59 44.1
Eucgr.F01147 Eucalyptus grandis HOM05D003240 ORTHO05D009426 7.8e-07 57.8 61 42.6
TWI38G1889 Tripterygium wilfordii HOM05D003240 ORTHO05D009426 7.8e-07 57.8 70 38.6
DCAR_017136 Daucus carota HOM05D003240 ORTHO05D009426 1.3e-06 57.0 102 34.3
CSS0044584 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 3.0e-06 55.8 75 38.7
COL.COLO4_27180 Corchorus olitorius HOM05D003240 ORTHO05D009426 3.0e-06 55.8 68 41.2
Lalb_Chr03g0042631 Lupinus albus HOM05D003240 ORTHO05D009426 3.0e-06 55.8 59 47.5
Cfa020576 Carpinus fangiana HOM05D003240 ORTHO05D009426 3.9e-06 55.5 93 38.7
Nn1g06519 Nelumbo nucifera HOM05D003240 ORTHO05D009426 5.1e-06 55.1 52 42.3
Gohir.A04G032000 Gossypium hirsutum HOM05D003240 ORTHO05D009426 6.6e-06 54.7 58 41.4


User provided reference genes

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