Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 1.9e-256 888.6 446 100.0
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 2.5e-102 376.7 450 45.8
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 5.5e-94 349.0 454 44.9
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 5.1e-92 342.4 453 44.6
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 4.3e-83 312.8 450 40.9
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 4.1e-81 306.2 400 44.2
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 9.1e-81 305.1 416 42.5
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 3.4e-80 303.1 457 39.8
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 3.4e-80 303.1 457 39.8
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 3.4e-80 303.1 416 42.3
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 1.3e-79 301.2 452 38.3
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 5.0e-79 299.3 403 43.2
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 6.5e-79 298.9 404 43.1
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 1.4e-78 297.7 403 42.4
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 2.1e-77 293.9 453 39.3
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 2.7e-77 293.5 413 41.2
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 2.7e-77 293.5 406 47.3
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 1.7e-74 284.3 454 37.4
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 8.2e-74 282.0 455 37.4
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.1e-73 281.6 397 41.6
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 4.1e-73 279.6 450 39.3
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 5.3e-73 279.3 459 37.3
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 7.0e-73 278.9 457 37.4
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.5e-72 277.7 457 37.2
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 2.6e-72 276.9 455 38.0
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 7.7e-72 275.4 399 40.1
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 1.3e-71 274.6 403 39.2
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 1.3e-71 274.6 454 37.0
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 2.2e-71 273.9 457 37.0
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 2.9e-71 273.5 453 36.0
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 5.0e-71 272.7 451 38.1
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.1e-70 271.6 399 39.6
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 2.5e-70 270.4 454 37.4
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 9.4e-70 268.5 459 36.8
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 1.6e-69 267.7 459 37.5
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 8.0e-69 265.4 464 36.2
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 2.3e-68 263.8 459 35.9
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 2.3e-68 263.8 454 35.9
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 5.2e-68 262.7 400 41.2
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 5.2e-68 262.7 455 37.6
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 6.7e-68 262.3 455 36.7
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 1.1e-67 261.5 459 36.2
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 1.5e-67 261.2 403 38.7
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 2.6e-67 260.4 459 38.3
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 3.3e-67 260.0 459 38.1
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 5.7e-67 259.2 405 38.3
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 1.7e-66 257.7 411 39.7
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 2.8e-66 256.9 455 35.6
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 4.8e-66 256.1 409 39.1
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 8.2e-66 255.4 398 39.9
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 1.1e-65 255.0 404 38.6
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 1.8e-65 254.2 398 39.9
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 3.1e-65 253.4 458 36.0
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 3.1e-65 253.4 454 35.0
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 4.1e-65 253.1 458 35.8
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 4.1e-65 253.1 403 39.0
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 7.0e-65 252.3 404 39.1
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 7.0e-65 252.3 470 34.9
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 2.0e-64 250.8 382 39.0
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 3.5e-64 250.0 410 38.0
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 4.5e-64 249.6 410 40.0
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 4.5e-64 249.6 410 40.0
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 7.7e-64 248.8 411 36.5
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 7.7e-64 248.8 409 40.1
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 1.0e-63 248.4 455 35.2
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 1.0e-63 248.4 403 39.7
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 1.7e-63 247.7 432 36.1
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 2.9e-63 246.9 454 34.4
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 3.8e-63 246.5 403 38.0
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 8.5e-63 245.4 422 37.9
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 2.5e-62 243.8 402 37.3
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 2.5e-62 243.8 409 38.9
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 5.5e-62 242.7 392 36.0
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 1.2e-61 241.5 406 39.2
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 2.1e-61 240.7 418 37.6
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.7e-61 240.4 392 36.0
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 4.7e-61 239.6 422 37.0
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 4.7e-61 239.6 407 35.9
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 6.1e-61 239.2 392 35.5
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 5.2e-60 236.1 401 36.9
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 6.8e-60 235.7 409 39.9
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.2e-59 235.0 392 35.5
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 1.5e-59 234.6 396 36.6
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 4.4e-59 233.0 409 38.9
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 1.3e-58 231.5 462 32.9
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 1.7e-58 231.1 404 36.4
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 2.2e-58 230.7 406 37.2
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 4.8e-58 229.6 456 33.1
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 1.1e-57 228.4 455 35.2
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 9.1e-57 225.3 406 34.5
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 2.7e-56 223.8 425 34.6
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 5.9e-56 222.6 454 33.5
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 7.7e-56 222.2 404 36.9
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 1.5e-54 218.0 426 34.0
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 1.0e-52 211.8 422 35.3
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 2.3e-52 210.7 406 35.5
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 3.4e-51 206.8 411 32.6
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 7.5e-51 205.7 405 35.8
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 2.8e-50 203.8 405 36.3
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 1.8e-49 201.1 392 34.9
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 2.3e-47 194.1 409 33.5
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 9.5e-46 188.7 435 32.9
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 4.7e-45 186.4 451 30.8
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 4.4e-43 179.9 300 39.0
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 7.5e-43 179.1 400 33.5
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 9.8e-43 178.7 397 32.7
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 3.7e-42 176.8 408 32.4
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 4.1e-41 173.3 392 30.9
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 9.2e-41 172.2 384 31.2
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 2.0e-40 171.0 385 30.4
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 2.0e-40 171.0 385 30.4
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 2.7e-40 170.6 420 29.3
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 2.7e-40 170.6 384 31.2
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 2.7e-40 170.6 384 31.2
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 5.0e-39 166.4 394 31.2
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 4.3e-38 163.3 391 30.7
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 4.7e-37 159.8 406 31.5
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 4.4e-35 153.3 383 29.8
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 6.4e-34 149.4 382 32.7
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 1.0e-31 142.1 385 31.9
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 2.1e-29 134.4 445 28.8
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 6.8e-28 129.4 214 36.4
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 8.3e-26 122.5 179 34.6
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 4.6e-24 116.7 474 25.5
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 6.6e-23 112.8 219 40.6
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 6.6e-23 112.8 464 27.2
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 7.3e-22 109.4 193 40.4
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.4e-20 105.1 390 26.2
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 4.0e-20 103.6 205 35.1
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 6.8e-20 102.8 382 30.4
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 1.5e-19 101.7 396 26.3
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 3.2e-17 94.0 107 47.7
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 4.1e-17 93.6 102 49.0
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 1.0e-15 89.0 382 24.9
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 8.6e-15 85.9 223 23.8
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 3.3e-14 84.0 130 40.8
Medtr5g025380 Medicago truncatula HOM05D005001 ORTHO05D005796 4.9e-10 70.1 140 34.3
Aa31LG1G22410 Aethionema arabicum HOM05D002515 ORTHO05D002722 1.3e-07 62.0 177 26.6
Cc06_g02660 Coffea canephora HOM05D002515 ORTHO05D002722 1.7e-07 61.6 217 26.7
Manes.11G128400 Manihot esculenta HOM05D002515 ORTHO05D002722 1.7e-07 61.6 195 25.6
Carub.0006s0118 Capsella rubella HOM05D002515 ORTHO05D002722 3.9e-07 60.5 195 25.6
Sp6g40090 Schrenkiella parvula HOM05D002515 ORTHO05D002722 3.9e-07 60.5 172 27.3
Potri.001G239500 Populus trichocarpa HOM05D002515 ORTHO05D002722 5.1e-07 60.1 312 22.4
BcaNung02129 Brassica carinata HOM05D005843 ORTHO05D007781 8.7e-07 59.3 204 26.0
C09p74180 Brassica napus HOM05D002515 ORTHO05D002722 8.7e-07 59.3 204 26.0
BolC9t60151H Brassica oleracea HOM05D002515 ORTHO05D002722 8.7e-07 59.3 204 26.0
Dinv35605 Davidia involucrata HOM05D002515 ORTHO05D002722 1.1e-06 58.9 228 25.9
AL6G11620 Arabidopsis lyrata HOM05D002515 ORTHO05D002722 1.5e-06 58.5 195 25.6
CSS0028630 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 1.5e-06 58.5 234 24.8
CANSAT35G0014 Cannabis sativa HOM05D002515 ORTHO05D002722 1.5e-06 58.5 210 25.7
BraA10t45358Z Brassica rapa HOM05D002515 ORTHO05D002722 2.5e-06 57.8 188 25.5
AT5G02390 Arabidopsis thaliana HOM05D002515 ORTHO05D002722 3.3e-06 57.4 194 23.7
A10p33270 Brassica napus HOM05D002515 ORTHO05D002722 3.3e-06 57.4 204 25.5
Lalb_Chr01g0011081 Lupinus albus HOM05D002515 ORTHO05D002722 3.3e-06 57.4 193 21.2
BcaC06g31985 Brassica carinata HOM05D002515 ORTHO05D002722 4.3e-06 57.0 188 26.1
CDE05G3420 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 4.3e-06 57.0 217 26.3
Lsat_1_v5_gn_3_96320 Lactuca sativa HOM05D001693 ORTHO05D001588 4.3e-06 57.0 245 24.9
C03p00940 Brassica napus HOM05D005843 ORTHO05D007781 5.6e-06 56.6 247 23.9
BolC3t12656H Brassica oleracea HOM05D005843 ORTHO05D007781 5.6e-06 56.6 247 23.9
Glyma.13G335900 Glycine max HOM05D002515 ORTHO05D002722 5.6e-06 56.6 211 23.2
Prupe.6G254700 Prunus persica HOM05D002515 ORTHO05D002722 5.6e-06 56.6 200 25.5
Sabra09G0021700 Salix brachista HOM05D002515 ORTHO05D002722 5.6e-06 56.6 181 23.8
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 7.3e-06 56.2 97 37.1


User provided reference genes

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