Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 2.4e-223 778.5 384 100.0
MSTRG.6498 Avicennia marina HOM05D006815 ORTHO05D008536 4.3e-71 272.7 222 59.0
Oeu035701.1 Olea europaea HOM05D006815 ORTHO05D008536 2.1e-70 270.4 209 59.3
Dinv24040 Davidia involucrata HOM05D006815 ORTHO05D008536 8.9e-69 265.0 207 58.9
Migut.J01868 Erythranthe guttata HOM05D006815 ORTHO05D008536 2.6e-68 263.5 212 60.4
Cpa.g.sc9.26 Carica papaya HOM05D006815 ORTHO05D008536 4.2e-66 256.1 216 58.3
Duzib106G1458 Durio zibethinus HOM05D006815 ORTHO05D008536 1.2e-65 254.6 202 58.9
Actinidia22067 Actinidia chinensis HOM05D006815 ORTHO05D008536 2.7e-65 253.4 214 54.7
Potri.006G194600 Populus trichocarpa HOM05D006815 ORTHO05D008536 3.5e-65 253.1 235 54.5
SalBow6G3515 Salvia bowleyana HOM05D006815 ORTHO05D008536 3.5e-65 253.1 255 51.4
CANSAT64G2825 Cannabis sativa HOM05D006815 ORTHO05D008536 7.8e-65 251.9 213 55.4
Sabra06G0149300 Salix brachista HOM05D006815 ORTHO05D008536 1.0e-64 251.5 235 54.0
Cc06_g15510 Coffea canephora HOM05D006815 ORTHO05D008536 1.7e-64 250.8 240 51.2
CiPaw.09G028400 Carya illinoinensis HOM05D006815 ORTHO05D008536 3.9e-64 249.6 205 56.6
TWI53G1298 Tripterygium wilfordii HOM05D006815 ORTHO05D008536 3.9e-64 249.6 214 55.1
PGSC0003DMG400001108 Solanum tuberosum HOM05D006815 ORTHO05D008536 5.1e-64 249.2 206 58.3
Peaxi162Scf00463g00417 Petunia axillaris HOM05D006815 ORTHO05D008536 8.7e-64 248.4 226 54.4
Gorai.002G155400 Gossypium raimondii HOM05D006815 ORTHO05D008536 1.9e-63 247.3 238 52.1
SGA_v2.0_scaffold57G20097 Striga asiatica HOM05D006815 ORTHO05D008536 2.5e-63 246.9 249 54.6
Gohir.D01G124800 Gossypium hirsutum HOM05D006815 ORTHO05D008536 3.3e-63 246.5 238 52.1
Cfa020143 Carpinus fangiana HOM05D006815 ORTHO05D008536 5.6e-63 245.7 227 53.3
Haze_20020 Corylus avellana HOM05D006815 ORTHO05D008536 5.6e-63 245.7 202 57.4
Haze_20023 Corylus avellana HOM05D006815 ORTHO05D008536 5.6e-63 245.7 202 57.4
QL07p024496 Quercus lobata HOM05D006815 ORTHO05D008536 7.3e-63 245.4 227 52.9
Solyc03g053020.4 Solanum lycopersicum HOM05D006815 ORTHO05D008536 7.3e-63 245.4 206 56.8
Gohir.A01G137200 Gossypium hirsutum HOM05D006815 ORTHO05D008536 9.6e-63 245.0 238 52.1
Sopen03g011500 Solanum pennellii HOM05D006815 ORTHO05D008536 1.6e-62 244.2 206 56.3
Thecc.05G174900 Theobroma cacao HOM05D006815 ORTHO05D008536 1.6e-62 244.2 202 57.4
CAN.G1314.3 Capsicum annuum HOM05D006815 ORTHO05D008536 4.8e-62 242.7 229 51.1
Manes.08G042600 Manihot esculenta HOM05D006815 ORTHO05D008536 4.8e-62 242.7 217 54.4
Atru.chr8.1155 Acer truncatum HOM05D006815 ORTHO05D008536 2.4e-61 240.4 213 53.1
PGR004G0977 Punica granatum HOM05D006815 ORTHO05D008536 4.0e-61 239.6 210 53.8
RcHm_v2.0_Chr3g0479231 Rosa chinensis HOM05D006815 ORTHO05D008536 4.0e-61 239.6 222 55.0
TAR369G0232 Trochodendron aralioides HOM05D006815 ORTHO05D008536 4.0e-61 239.6 201 56.2
Rhsim03G0035800 Rhododendron simsii HOM05D006815 ORTHO05D008536 5.3e-61 239.2 204 53.9
Lsat_1_v5_gn_1_60941 Lactuca sativa HOM05D006815 ORTHO05D008536 1.2e-60 238.0 208 51.4
MD14G1054000 Malus domestica HOM05D006815 ORTHO05D008536 1.2e-60 238.0 228 52.2
Nn2g15741 Nelumbo nucifera HOM05D006815 ORTHO05D008536 1.5e-60 237.7 202 54.5
Ciclev10012299m.g Citrus clementina HOM05D006815 ORTHO05D008536 7.6e-60 235.3 243 49.4
COL.COLO4_29358 Corchorus olitorius HOM05D006815 ORTHO05D008536 9.9e-60 235.0 210 53.3
THA.LOC104824483 Tarenaya hassleriana HOM05D006815 ORTHO05D008536 2.2e-59 233.8 234 53.0
Prupe.7G081100 Prunus persica HOM05D006815 ORTHO05D008536 3.8e-59 233.0 202 54.0
FvH4_6g21880 Fragaria vesca HOM05D006815 ORTHO05D008536 4.9e-59 232.6 199 57.8
FAN14G3951 Fragaria x ananassa HOM05D006815 ORTHO05D008536 4.9e-59 232.6 199 57.8
HanXRQChr01g0024541 Helianthus annuus HOM05D006815 ORTHO05D008536 6.4e-59 232.3 200 54.5
Thhalv10017089m.g Eutrema salsugineum HOM05D006815 ORTHO05D008536 1.1e-58 231.5 212 55.2
DCAR_013671 Daucus carota HOM05D006815 ORTHO05D008536 2.4e-58 230.3 227 48.9
Eucgr.A02470 Eucalyptus grandis HOM05D006815 ORTHO05D008536 2.4e-58 230.3 203 54.2
FAN02G2829 Fragaria x ananassa HOM05D006815 ORTHO05D008536 2.4e-58 230.3 221 52.9
ECA248G0678 Erigeron canadensis HOM05D006815 ORTHO05D008536 5.4e-58 229.2 199 54.8
FAN09G4209 Fragaria x ananassa HOM05D006815 ORTHO05D008536 5.4e-58 229.2 235 51.5
GSVIVG01033467001 Vitis vinifera HOM05D006815 ORTHO05D008536 7.1e-58 228.8 190 56.3
A05p02650 Brassica napus HOM05D006815 ORTHO05D008536 1.2e-57 228.0 202 54.0
BraA05t19258Z Brassica rapa HOM05D006815 ORTHO05D008536 1.2e-57 228.0 202 54.0
PSO541G3114 Papaver somniferum HOM05D006815 ORTHO05D008536 3.5e-57 226.5 241 48.5
AUR62012005 Chenopodium quinoa HOM05D006815 ORTHO05D008536 4.6e-57 226.1 214 50.0
Aa31LG1G24180 Aethionema arabicum HOM05D006815 ORTHO05D008536 7.9e-57 225.3 211 54.0
PSO675G7684 Papaver somniferum HOM05D006815 ORTHO05D008536 1.3e-56 224.6 241 48.1
Sp4g24220 Schrenkiella parvula HOM05D006815 ORTHO05D008536 1.8e-56 224.2 218 51.8
Sed0026757 Sechium edule HOM05D006815 ORTHO05D008536 1.8e-56 224.2 203 50.2
BcaC02g12449 Brassica carinata HOM05D006815 ORTHO05D008536 3.0e-56 223.4 201 53.2
C04p03160 Brassica napus HOM05D006815 ORTHO05D008536 3.0e-56 223.4 201 53.2
BolC4t21956H Brassica oleracea HOM05D006815 ORTHO05D008536 3.0e-56 223.4 201 53.2
Carub.0004s2428 Capsella rubella HOM05D006815 ORTHO05D008536 3.9e-56 223.0 202 55.0
Lalb_Chr15g0079111 Lupinus albus HOM05D006815 ORTHO05D008536 5.1e-56 222.6 199 51.3
AL4G40310 Arabidopsis lyrata HOM05D006815 ORTHO05D008536 6.7e-56 222.2 204 53.9
AT2G41950 Arabidopsis thaliana HOM05D006815 ORTHO05D008536 8.7e-56 221.9 204 52.9
Aqoxy2G00089 Aquilegia oxysepala HOM05D006815 ORTHO05D008536 1.1e-55 221.5 204 50.5
CsaV3_3G038620 Cucumis sativus L. HOM05D006815 ORTHO05D008536 1.1e-55 221.5 203 50.7
MELO3C009608.2 Cucumis melo HOM05D006815 ORTHO05D008536 1.9e-55 220.7 203 50.2
arahy.Tifrunner.gnm1.ann1.8HEC25 Arachis hypogaea HOM05D006815 ORTHO05D008536 3.3e-55 219.9 202 52.5
Hund19213 Selenicereus undatus HOM05D006815 ORTHO05D008536 4.3e-55 219.5 217 48.4
arahy.Tifrunner.gnm1.ann1.TZP9CN Arachis hypogaea HOM05D006815 ORTHO05D008536 5.6e-55 219.2 202 52.5
AUR62015334 Chenopodium quinoa HOM05D006815 ORTHO05D008536 5.6e-55 219.2 199 51.8
vmacro22625 Vaccinium macrocarpon HOM05D006815 ORTHO05D008536 5.6e-55 219.2 235 46.8
ClCG10G017680 Citrullus lanatus HOM05D006815 ORTHO05D008536 9.6e-55 218.4 203 50.2
Nitab4.5_0000009g0210 Nicotiana tabacum HOM05D006815 ORTHO05D008536 1.3e-54 218.0 237 47.7
Lj2C363G3 Lonicera japonica HOM05D006815 ORTHO05D008536 3.6e-54 216.5 202 52.5
CSS0043811 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 4.8e-54 216.1 202 54.5
arahy.Tifrunner.gnm1.ann1.G1RGZB Arachis hypogaea HOM05D006815 ORTHO05D008536 6.2e-54 215.7 202 52.0
Medtr7g093640 Medicago truncatula HOM05D006815 ORTHO05D008536 8.1e-54 215.3 202 52.0
CSS0019995 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 1.1e-53 214.9 202 54.5
TPR.G13363 Trifolium pratense HOM05D006815 ORTHO05D008536 1.4e-53 214.5 202 52.5
Nitab4.5_0002339g0010 Nicotiana tabacum HOM05D006815 ORTHO05D008536 1.8e-53 214.2 204 52.5
Psat3g067520 Pisum sativum HOM05D006815 ORTHO05D008536 2.4e-53 213.8 227 47.1
EL10Ac3g06884 Beta vulgaris HOM05D006815 ORTHO05D008536 9.0e-53 211.8 214 46.3
Ca_08540_v3 Cicer arietinum L. HOM05D006815 ORTHO05D008536 4.5e-52 209.5 239 46.9
Lj1g0024455 Lotus japonicus HOM05D006815 ORTHO05D008536 5.8e-52 209.1 194 53.1
ATR0598G218 Amborella trichopoda HOM05D006815 ORTHO05D008536 1.7e-51 207.6 241 42.7
Phvul.001G144400 Phaseolus vulgaris HOM05D006815 ORTHO05D008536 1.1e-50 204.9 224 47.8
VMungo1383G0507 Vigna mungo HOM05D006815 ORTHO05D008536 9.3e-50 201.8 197 49.2
CDE05G2500 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 1.2e-49 201.4 230 44.8
MBI19_g17427_MAGBIO Magnolia biondii HOM05D006815 ORTHO05D008536 1.8e-48 197.6 209 48.8
Glyma.03G146600 Glycine max HOM05D006815 ORTHO05D008536 5.1e-48 196.1 197 48.7
Glyma.19G149900 Glycine max HOM05D006815 ORTHO05D008536 1.1e-47 194.9 198 48.0
arahy.Tifrunner.gnm1.ann1.70NGGP Arachis hypogaea HOM05D006815 ORTHO05D008536 1.5e-47 194.5 232 43.5
HPP92_023474 Vanilla planifolia HOM05D006815 ORTHO05D008536 5.8e-44 182.6 210 42.4
HPP92_023458 Vanilla planifolia HOM05D006815 ORTHO05D008536 1.3e-43 181.4 210 41.9
Sc13g0002390 Simmondsia chinensis HOM05D006815 ORTHO05D008536 9.3e-42 175.3 156 53.8
arahy.Tifrunner.gnm1.ann1.13XKQP Arachis hypogaea HOM05D006815 ORTHO05D008536 1.6e-41 174.5 233 43.8
CAN.G274.29 Capsicum annuum HOM05D006815 ORTHO05D008536 4.3e-39 166.4 168 49.4
CARHR137070 Cardamine hirsuta HOM05D006815 ORTHO05D008536 1.0e-35 155.2 148 55.4
MD12G1054600 Malus domestica HOM05D006815 ORTHO05D008536 6.5e-35 152.5 149 49.7
CDE11G0339 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 1.2e-33 148.3 190 43.2
Os03g0226700 Oryza sativa ssp. japonica HOM05D006815 ORTHO05D008536 1.2e-28 131.7 239 33.5
SEGI_30907 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 2.3e-24 117.5 187 33.7
Mapoly0159s0012 Marchantia polymorpha HOM05D006815 ORTHO05D008536 1.1e-23 115.2 191 35.6
BcaC03g14280 Brassica carinata HOM05D006815 ORTHO05D008536 2.9e-19 100.5 188 35.6
Pp3c12_7730 Physcomitrium patens HOM05D006815 ORTHO05D008536 4.2e-18 96.7 179 30.2
Zm00001eb009870 Zea mays HOM05D006815 ORTHO05D008536 9.4e-18 95.5 200 29.5
arahy.Tifrunner.gnm1.ann1.19RU7Q Arachis hypogaea HOM05D006815 ORTHO05D008536 9.1e-13 79.0 75 45.3
SEGI_06955 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 1.2e-12 78.6 124 33.9
CARHR137080 Cardamine hirsuta HOM05D006815 ORTHO05D008536 5.9e-12 76.3 62 51.6
SGA_v2.0_scaffold329G48860 Striga asiatica HOM05D008294 ORTHO05D010468 1.0e-11 75.5 70 54.3
C02p16600 Brassica napus HOM05D006815 ORTHO05D008536 1.7e-11 74.7 71 54.9
BolC2t07761H Brassica oleracea HOM05D006815 ORTHO05D008536 5.0e-11 73.2 71 53.5
MSTRG.3520 Avicennia marina HOM05D008294 ORTHO05D010468 8.5e-11 72.4 70 48.6
Cc07_g08180 Coffea canephora HOM05D008294 ORTHO05D010468 7.2e-10 69.3 76 46.1
Atru.chr13.2285 Acer truncatum HOM05D008294 ORTHO05D010468 9.4e-10 68.9 74 47.3
Lalb_Chr17g0346181 Lupinus albus HOM05D008294 ORTHO05D010468 8.0e-09 65.9 69 44.9
Migut.L00469 Erythranthe guttata HOM05D008294 ORTHO05D010468 1.4e-08 65.1 75 48.0
Thecc.04G121200 Theobroma cacao HOM05D008294 ORTHO05D010468 1.8e-08 64.7 73 46.6
Nn6g34990 Nelumbo nucifera HOM05D006815 ORTHO05D008536 2.3e-08 64.3 67 40.3
QL11p004113 Quercus lobata HOM05D008294 ORTHO05D010468 6.7e-08 62.8 75 45.3
SalBow7G4521 Salvia bowleyana HOM05D008294 ORTHO05D010468 6.7e-08 62.8 70 45.7
Oeu054753.1 Olea europaea HOM05D008294 ORTHO05D010468 1.5e-07 61.6 70 42.9
Nitab4.5_0002366g0040 Nicotiana tabacum HOM05D008294 ORTHO05D010468 2.0e-07 61.2 68 41.2
Gorai.008G058300 Gossypium raimondii HOM05D008294 ORTHO05D010468 2.6e-07 60.8 73 42.5
Potri.004G088300 Populus trichocarpa HOM05D008294 ORTHO05D010468 2.6e-07 60.8 77 36.4
SEGI_10730 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 2.6e-07 60.8 80 42.5
GSVIVG01030864001 Vitis vinifera HOM05D008294 ORTHO05D010468 2.6e-07 60.8 70 42.9
Eucgr.F02821 Eucalyptus grandis HOM05D008294 ORTHO05D010468 7.5e-07 59.3 69 40.6
ClCG05G010930 Citrullus lanatus HOM05D008294 ORTHO05D010468 9.7e-07 58.9 68 45.6
MELO3C020292.2 Cucumis melo HOM05D008294 ORTHO05D010468 9.7e-07 58.9 68 45.6
ECA238G3741 Erigeron canadensis HOM05D008294 ORTHO05D010468 9.7e-07 58.9 74 39.2
Cpa.g.sc604.2 Carica papaya HOM05D008294 ORTHO05D010468 1.7e-06 58.2 69 42.0
Manes.01G115600 Manihot esculenta HOM05D008294 ORTHO05D010468 1.7e-06 58.2 69 40.6
Nn3g18213 Nelumbo nucifera HOM05D008294 ORTHO05D010468 1.7e-06 58.2 69 40.6
Potri.017G128700 Populus trichocarpa HOM05D008294 ORTHO05D010468 1.7e-06 58.2 74 35.1
arahy.Tifrunner.gnm1.ann1.HG0CBG Arachis hypogaea HOM05D008294 ORTHO05D010468 2.2e-06 57.8 69 42.0
arahy.Tifrunner.gnm1.ann1.RHD4AQ Arachis hypogaea HOM05D008294 ORTHO05D010468 2.2e-06 57.8 69 42.0
Ciclev10013091m.g Citrus clementina HOM05D008294 ORTHO05D010468 2.2e-06 57.8 69 37.7
Sed0009315 Sechium edule HOM05D008294 ORTHO05D010468 2.2e-06 57.8 68 39.7
Solyc03g119810.1 Solanum lycopersicum HOM05D002803 ORTHO05D003089 2.2e-06 57.8 61 42.6
PGSC0003DMG400005702 Solanum tuberosum HOM05D002803 ORTHO05D003089 2.8e-06 57.4 60 43.3
Medtr1g067620 Medicago truncatula HOM05D002803 ORTHO05D003089 3.7e-06 57.0 48 47.9
Lalb_Chr04g0251301 Lupinus albus HOM05D008294 ORTHO05D010468 6.3e-06 56.2 69 39.1
Oeu033581.1 Olea europaea HOM05D002803 ORTHO05D003089 6.3e-06 56.2 91 38.5
CsaV3_1G006470 Cucumis sativus L. HOM05D002803 ORTHO05D003089 8.2e-06 55.8 60 48.3
Migut.H00270 Erythranthe guttata HOM05D008294 ORTHO05D010468 8.2e-06 55.8 74 39.2
TAR017G0001 Trochodendron aralioides HOM05D008294 ORTHO05D010468 8.2e-06 55.8 73 39.7


User provided reference genes

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