Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 1.2e-106 389.8 192 100.0
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 3.0e-97 358.6 192 88.5
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 1.5e-96 356.3 192 88.5
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 3.3e-96 355.1 192 87.5
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 3.3e-96 355.1 192 87.5
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 1.2e-95 353.2 192 88.0
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 6.9e-94 347.4 192 85.9
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 6.9e-94 347.4 192 85.9
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 1.2e-93 346.7 191 85.9
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 1.2e-93 346.7 192 85.9
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 1.5e-93 346.3 190 86.3
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 2.0e-93 345.9 191 86.4
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 3.4e-93 345.1 192 85.9
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 3.4e-93 345.1 192 87.0
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 3.4e-93 345.1 191 86.4
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 4.4e-93 344.7 191 85.9
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 5.8e-93 344.4 191 85.9
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 7.6e-93 344.0 191 85.9
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 7.6e-93 344.0 190 86.8
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 7.6e-93 344.0 191 88.0
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 9.9e-93 343.6 190 85.8
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 1.3e-92 343.2 192 85.9
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 1.7e-92 342.8 190 85.3
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 2.9e-92 342.0 190 84.7
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 2.9e-92 342.0 191 85.3
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 2.9e-92 342.0 191 84.8
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 3.8e-92 341.7 190 84.2
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 6.4e-92 340.9 190 84.7
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 6.4e-92 340.9 190 85.8
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 6.4e-92 340.9 190 85.8
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 8.4e-92 340.5 190 84.2
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 1.1e-91 340.1 192 84.9
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 1.4e-91 339.7 190 85.3
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 1.4e-91 339.7 189 84.7
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 1.9e-91 339.3 190 84.2
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 2.4e-91 339.0 190 85.8
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 2.4e-91 339.0 190 84.7
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 3.2e-91 338.6 190 85.8
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 3.2e-91 338.6 190 85.3
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 4.2e-91 338.2 190 83.7
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 4.2e-91 338.2 190 84.7
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 7.1e-91 337.4 190 83.2
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 7.1e-91 337.4 190 83.2
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 7.1e-91 337.4 192 82.8
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 9.3e-91 337.0 190 85.3
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 1.2e-90 336.7 190 83.2
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 1.2e-90 336.7 190 83.7
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 1.6e-90 336.3 190 84.7
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 1.6e-90 336.3 190 82.6
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 2.1e-90 335.9 190 84.2
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 2.7e-90 335.5 190 82.6
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 2.7e-90 335.5 190 82.6
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 2.7e-90 335.5 190 82.6
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 2.7e-90 335.5 190 84.7
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 3.5e-90 335.1 192 82.3
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 7.8e-90 334.0 190 82.1
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 7.8e-90 334.0 192 83.3
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 1.0e-89 333.6 186 83.9
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 1.0e-89 333.6 190 83.7
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 1.3e-89 333.2 190 83.2
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 1.3e-89 333.2 190 82.6
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 1.7e-89 332.8 190 82.6
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 2.3e-89 332.4 192 81.2
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 2.3e-89 332.4 192 80.7
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 3.0e-89 332.0 190 83.2
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 3.0e-89 332.0 194 84.0
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 1.1e-88 330.1 190 81.1
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 1.1e-88 330.1 190 82.1
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 1.9e-88 329.3 191 83.8
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 1.9e-88 329.3 179 87.7
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 3.6e-87 325.1 190 80.5
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 6.2e-87 324.3 216 73.1
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 6.2e-87 324.3 190 81.1
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 1.1e-86 323.6 192 81.2
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 1.1e-86 323.6 230 71.3
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 4.0e-86 321.6 190 81.6
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 6.9e-86 320.9 190 81.6
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 6.9e-86 320.9 190 81.6
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 1.5e-85 319.7 192 80.2
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 4.5e-85 318.2 190 80.5
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.9e-84 315.5 207 74.4
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 1.1e-83 313.5 244 67.6
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 2.4e-83 312.4 192 78.6
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 2.4e-83 312.4 200 74.5
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 1.2e-82 310.1 177 81.4
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 1.6e-82 309.7 196 77.0
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 6.0e-82 307.8 164 89.0
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 1.0e-81 307.0 174 84.5
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 3.9e-81 305.1 168 86.9
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 5.1e-81 304.7 176 84.7
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 5.1e-81 304.7 192 78.6
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 1.9e-80 302.8 190 77.4
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 7.4e-80 300.8 177 79.1
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 9.6e-80 300.4 164 83.5
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 2.1e-74 282.7 169 80.5
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 1.0e-73 280.4 190 69.5
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 3.0e-73 278.9 156 83.3
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 1.8e-70 269.6 197 67.5
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 7.1e-67 257.7 134 90.3
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 9.3e-67 257.3 159 79.9
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.2e-66 256.9 160 79.4
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 6.0e-66 254.6 158 78.5
HPP92_023420 Vanilla planifolia HOM05D005644 ORTHO05D007092 2.8e-63 245.7 194 66.0
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 3.7e-63 245.4 136 86.0
Mapoly0106s0034 Marchantia polymorpha HOM05D005644 ORTHO05D007092 3.4e-61 238.8 166 68.1
MBI08_g40822_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.0e-60 237.3 224 57.1
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 3.8e-60 235.3 164 68.9
SMO137G0236 Selaginella moellendorffii HOM05D005644 ORTHO05D007092 6.7e-57 224.6 166 63.3
Pp3c7_6320 Physcomitrium patens HOM05D005644 ORTHO05D007092 1.5e-56 223.4 191 58.1
AagrBONN_evm.TU.Sc2ySwM_362.2207 Anthoceros agrestis HOM05D005644 ORTHO05D007092 9.7e-56 220.7 173 60.1
SGA_v2.0_scaffold2G01321 Striga asiatica HOM05D005644 ORTHO05D007092 1.3e-55 220.3 192 62.0
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 2.4e-54 216.1 135 78.5
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 4.5e-53 211.8 112 88.4
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.6e-50 203.4 168 63.1
MCO15G254 Micromonas commoda HOM05D005644 ORTHO05D007092 1.6e-50 203.4 175 53.7
PRCOL_00001837 Prasinoderma coloniale HOM05D005644 ORTHO05D007092 1.3e-47 193.7 153 58.8
SEGI_22782 Sequoiadendron giganteum HOM05D005644 ORTHO05D007092 2.9e-44 182.6 110 77.3
Haze_27504 Corylus avellana HOM05D005644 ORTHO05D007092 2.1e-42 176.4 151 55.0
Cre13.g571850 Chlamydomonas reinhardtii HOM05D005644 ORTHO05D007092 9.7e-40 167.5 144 52.1
CBR_g49399 Chara braunii HOM05D005644 ORTHO05D007092 2.9e-36 156.0 102 67.6
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 7.7e-29 131.3 132 54.5
FAN13G0528 Fragaria x ananassa HOM05D005644 ORTHO05D007092 3.8e-28 129.0 169 45.0
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 3.8e-28 129.0 137 53.3
MBI02_g42708_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 5.2e-25 118.6 130 53.8
C07p04570 Brassica napus HOM05D005644 ORTHO05D007092 2.2e-23 113.2 126 48.4
MBI18_g01974_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.7e-20 103.6 68 69.1
MBI02_g17151_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.9e-19 100.1 130 46.9
MBI02_g23461_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.6e-18 97.1 217 35.9
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.0e-17 94.4 120 45.8
Hma1.2p1_0450F.1_g155660 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 2.0e-16 90.1 59 72.9
Hund21501 Selenicereus undatus HOM05D005644 ORTHO05D007092 9.8e-16 87.8 53 77.4
Ah.13g077660 Amaranthus hybridus HOM05D005644 ORTHO05D007092 1.8e-14 83.6 57 68.4
COL.COLO4_22055 Corchorus olitorius HOM05D005644 ORTHO05D007092 1.9e-11 73.6 47 76.6
Thecc.08G151500 Theobroma cacao HOM05D005644 ORTHO05D007092 3.4e-08 62.8 33 78.8
MBI16_g04464_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 6.4e-07 58.5 103 36.9
Dinv38404 Davidia involucrata HOM05D005644 ORTHO05D007092 1.9e-06 57.0 61 50.8


User provided reference genes

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