Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_37.g12282 Utricularia gibba HOM05D003193 ORTHO05D004924 0.0e+00 3170.6 1693 100.0
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 0.0e+00 2485.3 1757 76.2
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 0.0e+00 2459.1 1756 74.9
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 0.0e+00 2449.5 1756 74.9
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 0.0e+00 2449.1 1756 74.8
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 0.0e+00 2446.4 1757 74.8
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 0.0e+00 2437.5 1757 74.7
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 0.0e+00 2435.2 1757 73.9
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 0.0e+00 2429.8 1786 72.3
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 0.0e+00 2425.2 1756 72.8
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 0.0e+00 2412.5 1757 73.3
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 0.0e+00 2411.7 1780 72.6
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 0.0e+00 2402.5 1756 72.3
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 0.0e+00 2399.4 1756 73.7
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 0.0e+00 2398.2 1756 72.1
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 0.0e+00 2396.7 1757 73.7
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 0.0e+00 2396.3 1730 74.3
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 0.0e+00 2387.5 1755 73.2
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 2382.1 1755 71.6
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 0.0e+00 2372.0 1756 72.9
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 0.0e+00 2365.9 1757 72.7
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 0.0e+00 2360.9 1757 72.1
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 0.0e+00 2360.9 1756 72.7
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 0.0e+00 2360.5 1757 71.8
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 0.0e+00 2359.7 1755 71.1
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 0.0e+00 2358.2 1756 71.9
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 2355.1 1755 71.0
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 0.0e+00 2352.8 1757 71.1
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 0.0e+00 2350.9 1852 69.5
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 0.0e+00 2348.2 1785 71.2
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 0.0e+00 2342.4 1758 71.2
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 0.0e+00 2332.0 1757 71.8
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 2331.2 1755 70.5
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 0.0e+00 2330.1 1757 72.1
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 0.0e+00 2329.7 1764 71.6
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 0.0e+00 2328.1 1721 72.5
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 0.0e+00 2325.4 1744 70.8
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 0.0e+00 2325.1 1743 72.2
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 0.0e+00 2324.7 1757 70.7
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 0.0e+00 2323.5 1757 71.7
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 2323.1 1755 70.6
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 2323.1 1755 70.6
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 0.0e+00 2320.4 1756 71.6
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 0.0e+00 2319.7 1757 71.3
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 0.0e+00 2317.0 1756 71.3
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 0.0e+00 2312.3 1757 71.3
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 0.0e+00 2308.5 1879 67.7
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 0.0e+00 2308.1 1757 70.6
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 0.0e+00 2306.6 1756 70.4
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 0.0e+00 2296.2 1756 70.3
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 0.0e+00 2276.1 1757 69.5
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 0.0e+00 2275.0 1757 70.2
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 0.0e+00 2274.6 1771 69.8
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 0.0e+00 2271.5 1744 70.8
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 0.0e+00 2271.5 1749 71.3
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 0.0e+00 2269.6 1744 70.6
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 0.0e+00 2266.5 1852 67.5
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 0.0e+00 2251.9 1757 69.3
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 0.0e+00 2226.1 1757 69.0
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 0.0e+00 2223.7 1756 69.0
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 0.0e+00 2223.4 1757 68.9
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 0.0e+00 2207.9 1747 68.5
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 0.0e+00 2201.0 1757 67.2
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 0.0e+00 2196.8 1549 76.4
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 0.0e+00 2188.7 1755 68.1
Cpa.g.sc51.21 Carica papaya HOM05D003193 ORTHO05D004924 0.0e+00 2174.8 1601 73.2
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 0.0e+00 2167.9 1789 66.9
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 0.0e+00 2149.4 1567 73.3
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 0.0e+00 2137.5 1758 66.8
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 0.0e+00 2127.8 1760 66.6
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 0.0e+00 2125.1 1763 66.1
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 0.0e+00 2107.8 1753 66.2
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 0.0e+00 2106.6 1752 66.3
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 0.0e+00 2106.6 1760 65.2
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 0.0e+00 2105.1 1752 66.2
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 0.0e+00 2104.3 1753 66.2
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 0.0e+00 2103.6 1758 66.5
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 0.0e+00 2095.5 1770 65.6
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 0.0e+00 2087.8 1756 65.7
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 0.0e+00 2086.2 1760 64.7
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 0.0e+00 2072.7 1761 65.0
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 0.0e+00 2062.7 1764 65.2
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 0.0e+00 2011.5 1756 63.2
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 0.0e+00 1998.4 1258 84.2
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 0.0e+00 1986.8 1757 61.1
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 0.0e+00 1971.8 1758 62.9
Lj2C47T5 Lonicera japonica HOM05D003193 ORTHO05D004924 0.0e+00 1935.2 1403 76.2
Hma1.2p1_0123F.1_g058180 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 0.0e+00 1909.0 1319 78.7
CiPaw.07G075200 Carya illinoinensis HOM05D003193 ORTHO05D004924 0.0e+00 1882.1 1413 72.1
SHI15636 Sapria himalayana HOM05D003193 ORTHO05D004924 0.0e+00 1865.5 1718 60.0
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 0.0e+00 1857.0 1761 58.0
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 0.0e+00 1767.7 1759 55.9
Solyc04g050510.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 0.0e+00 1759.2 1303 72.4
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 0.0e+00 1750.3 1123 79.7
Hma1.2p1_0123F.1_g058190 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 0.0e+00 1729.1 1198 79.0
Peaxi162Scf00071g00269 Petunia axillaris HOM05D003193 ORTHO05D004924 0.0e+00 1708.0 1292 71.7
SMO356G0295 Selaginella moellendorffii HOM05D003193 ORTHO05D004924 0.0e+00 1693.3 1758 54.7
TAR636G2059 Trochodendron aralioides HOM05D003193 ORTHO05D004924 0.0e+00 1644.0 1237 73.3
Oeu055042.1 Olea europaea HOM05D003193 ORTHO05D004924 0.0e+00 1635.2 1006 86.5
Hund07170 Selenicereus undatus HOM05D003193 ORTHO05D004924 0.0e+00 1548.9 1245 68.4
MD04G1233800 Malus domestica HOM05D003193 ORTHO05D004924 0.0e+00 1506.5 1482 58.3
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 0.0e+00 1465.7 1758 48.5
Os03g0721200 Oryza sativa ssp. japonica HOM05D003193 ORTHO05D004924 0.0e+00 1421.4 1264 64.9
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 0.0e+00 1266.5 1227 59.4
Actinidia03822 Actinidia chinensis HOM05D003193 ORTHO05D004924 0.0e+00 1249.2 799 79.5
Cre01.g015600 Chlamydomonas reinhardtii HOM05D003193 ORTHO05D004924 0.0e+00 1143.3 1772 40.2
SalBow1G0653 Salvia bowleyana HOM05D003193 ORTHO05D004924 0.0e+00 1123.6 1142 58.4
MELO3C008660.2 Cucumis melo HOM05D003193 ORTHO05D004924 4.1e-307 1058.9 728 75.3
PRCOL_00002743 Prasinoderma coloniale HOM05D003193 ORTHO05D004924 1.3e-300 1037.3 1822 37.7
MCO11G232 Micromonas commoda HOM05D003193 ORTHO05D004924 2.0e-277 960.3 1171 47.4
CARHR056140 Cardamine hirsuta HOM05D003193 ORTHO05D004924 2.5e-264 916.8 922 59.8
Actinidia03821 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.1e-251 874.8 860 60.7
Ah.02g118790 Amaranthus hybridus HOM05D003193 ORTHO05D004924 3.3e-248 863.2 722 70.5
Actinidia06816 Actinidia chinensis HOM05D003193 ORTHO05D004924 2.7e-218 763.8 856 55.4
FAN09G1546 Fragaria x ananassa HOM05D003193 ORTHO05D004924 3.4e-213 746.9 519 72.1
Nitab4.5_0000841g0120 Nicotiana tabacum HOM05D003193 ORTHO05D004924 5.8e-213 746.1 676 61.7
SEGI_35396 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 1.3e-204 718.4 457 79.2
Peaxi162Scf00071g02610 Petunia axillaris HOM05D003193 ORTHO05D004924 3.1e-190 670.6 484 71.1
Solyc04g050520.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 1.2e-189 668.7 465 73.1
Zm00001eb208190 Zea mays HOM05D003193 ORTHO05D004924 2.2e-188 664.5 779 51.5
Hund28419 Selenicereus undatus HOM05D003193 ORTHO05D004924 7.2e-187 659.4 463 73.2
Hund28421 Selenicereus undatus HOM05D003193 ORTHO05D004924 7.2e-187 659.4 463 73.2
CDE09G0101 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 1.6e-181 641.7 1004 41.8
CAN.G131.16 Capsicum annuum HOM05D003193 ORTHO05D004924 6.1e-178 629.8 724 51.4
Psat2g117360 Pisum sativum HOM05D003193 ORTHO05D004924 8.0e-178 629.4 500 67.8
Lsat_1_v5_gn_7_43461 Lactuca sativa HOM05D003193 ORTHO05D004924 9.1e-174 615.9 443 72.7
SalBow1G3637 Salvia bowleyana HOM05D003193 ORTHO05D004924 4.7e-162 577.0 486 64.6
Zm00001eb208180 Zea mays HOM05D003193 ORTHO05D004924 4.9e-151 540.4 346 80.9
Lsat_1_v5_gn_3_136501 Lactuca sativa HOM05D003193 ORTHO05D004924 1.6e-141 508.8 390 66.9
Nitab4.5_0001498g0050 Nicotiana tabacum HOM05D003193 ORTHO05D004924 6.6e-140 503.4 353 72.0
Lsat_1_v5_gn_8_84401 Lactuca sativa HOM05D003193 ORTHO05D004924 1.6e-138 498.8 429 62.2
Nitab4.5_0018351g0010 Nicotiana tabacum HOM05D003193 ORTHO05D023334 7.5e-136 490.0 435 60.0
SEGI_04281 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 3.4e-120 438.0 388 60.6
Lj2A47G46 Lonicera japonica HOM05D003193 ORTHO05D004924 3.5e-117 427.9 353 63.7
Lsat_1_v5_gn_2_9720 Lactuca sativa HOM05D003193 ORTHO05D004924 1.1e-115 422.9 363 64.2
Actinidia26097 Actinidia chinensis HOM05D003193 ORTHO05D004924 2.4e-89 335.5 231 75.3
CiPaw.07G075300 Carya illinoinensis HOM05D003193 ORTHO05D004924 1.5e-83 316.2 240 66.2
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 1.5e-80 306.2 316 54.7
CARHR056150 Cardamine hirsuta HOM05D003193 ORTHO05D004924 1.5e-75 289.7 230 66.1
SEGI_23671 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 2.2e-71 275.8 224 68.3
Nitab4.5_0019712g0010 Nicotiana tabacum HOM05D003193 ORTHO05D004924 2.4e-65 255.8 139 90.6
SEGI_11076 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 1.2e-59 236.9 219 55.7
Actinidia06820 Actinidia chinensis HOM05D003193 ORTHO05D004924 4.1e-57 228.4 213 58.2
MD04G1233900 Malus domestica HOM05D003193 ORTHO05D004924 1.3e-55 223.4 180 64.4
Psat2g117480 Pisum sativum HOM05D003193 ORTHO05D029199 6.5e-55 221.1 144 84.7
MCO13G622 Micromonas commoda HOM05D000681 ORTHO05D025872 1.0e-52 213.8 466 29.8
Actinidia26096 Actinidia chinensis HOM05D003193 ORTHO05D023334 1.1e-46 193.7 189 51.3
Lsat_1_v5_gn_8_52980 Lactuca sativa HOM05D003193 ORTHO05D004924 1.5e-46 193.4 195 57.4
Lsat_1_v5_gn_2_111060 Lactuca sativa HOM05D003193 ORTHO05D000541 1.9e-38 166.4 126 72.2
Actinidia06817 Actinidia chinensis HOM05D003193 ORTHO05D004924 3.3e-38 165.6 120 75.8
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 6.8e-36 157.9 148 54.7
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 6.8e-36 157.9 148 54.7
Cre04.g222700 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D028791 2.9e-34 152.5 291 30.6
Cre14.g615950 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D028791 1.0e-31 144.1 291 31.3
PRCOL_00000464 Prasinoderma coloniale HOM05D000681 ORTHO05D025872 1.0e-31 144.1 340 32.1
Actinidia06821 Actinidia chinensis HOM05D003193 ORTHO05D026302 1.6e-29 136.7 100 73.0
Hund17244 Selenicereus undatus HOM05D003193 ORTHO05D006083 8.9e-28 131.0 109 61.5
AL2G19220 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 1.2e-24 120.6 101 63.4
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 6.6e-23 114.8 98 67.3
Ah.02g118650 Amaranthus hybridus HOM05D003193 ORTHO05D004924 1.9e-22 113.2 72 79.2
PRCOL_00007280 Prasinoderma coloniale HOM05D000681 ORTHO05D028791 4.7e-21 108.6 261 26.1
DCAR_025592 Daucus carota HOM05D003193 ORTHO05D029199 5.2e-20 105.1 54 92.6
Actinidia26098 Actinidia chinensis HOM05D003193 ORTHO05D026302 6.8e-20 104.8 80 70.0
Psat2g117520 Pisum sativum HOM05D003193 ORTHO05D023087 6.8e-20 104.8 70 67.1
Nitab4.5_0019712g0020 Nicotiana tabacum HOM05D003193 ORTHO05D004924 1.3e-18 100.5 58 93.1
DCAR_029995 Daucus carota HOM05D003193 ORTHO05D023334 8.3e-18 97.8 72 58.3
DCAR_032356 Daucus carota HOM05D003193 ORTHO05D023334 8.3e-18 97.8 72 58.3
Lsat_1_v5_gn_5_158860 Lactuca sativa HOM05D003193 ORTHO05D231496 1.4e-17 97.1 65 73.8
Lsat_1_v5_gn_8_118300 Lactuca sativa HOM05D003193 ORTHO05D002149 1.2e-16 94.0 255 29.8
Lsat_1_v5_gn_8_87461 Lactuca sativa HOM05D003193 ORTHO05D000541 3.5e-16 92.4 55 85.5
Lsat_1_v5_gn_1_12580 Lactuca sativa HOM05D003193 ORTHO05D036451 4.3e-14 85.5 169 40.2
DCAR_015795 Daucus carota HOM05D003193 ORTHO05D029199 2.1e-13 83.2 43 90.7
TWI60G1601 Tripterygium wilfordii HOM05D003193 ORTHO05D029199 6.8e-12 78.2 81 56.8
Manes.08G142350 Manihot esculenta HOM05D003193 ORTHO05D023334 4.4e-11 75.5 94 40.4
Lsat_1_v5_gn_5_100381 Lactuca sativa HOM05D003193 ORTHO05D036451 2.4e-09 69.7 59 64.4
arahy.Tifrunner.gnm1.ann1.V6B23X Arachis hypogaea HOM05D003193 ORTHO05D084303 1.6e-08 67.0 122 38.5
QL03p032673 Quercus lobata HOM05D003193 ORTHO05D337941 6.0e-08 65.1 39 82.1
Actinidia23236 Actinidia chinensis HOM05D003193 ORTHO05D055714 1.1e-06 60.8 66 54.5


User provided reference genes

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