Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 3.6e-64 248.1 122 100.0
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 6.6e-42 174.1 112 72.3
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 7.3e-41 170.6 112 70.5
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 4.9e-37 157.9 119 63.9
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 6.4e-37 157.5 119 63.9
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 1.2e-35 153.3 111 66.7
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 3.5e-35 151.8 106 67.9
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 3.5e-35 151.8 108 67.6
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 6.0e-35 151.0 106 67.0
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 1.0e-34 150.2 114 63.2
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 2.3e-34 149.1 106 64.2
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 3.9e-34 148.3 112 63.4
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 3.9e-34 148.3 115 59.1
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.1e-34 147.9 111 64.0
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 5.1e-34 147.9 105 66.7
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 5.1e-34 147.9 105 66.7
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 5.1e-34 147.9 111 61.3
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 6.6e-34 147.5 111 64.0
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 6.6e-34 147.5 106 63.2
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 8.6e-34 147.1 102 67.6
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 8.6e-34 147.1 117 59.0
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 1.5e-33 146.4 107 65.4
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 1.5e-33 146.4 107 67.3
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 1.5e-33 146.4 111 63.1
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 1.9e-33 146.0 114 61.4
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 1.9e-33 146.0 113 59.3
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.5e-33 145.6 111 63.1
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 2.5e-33 145.6 102 64.7
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 3.3e-33 145.2 111 63.1
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 7.3e-33 144.1 108 63.9
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 1.6e-32 142.9 111 61.3
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 4.7e-32 141.4 108 61.1
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 6.2e-32 141.0 102 64.7
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.1e-31 140.2 118 59.3
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 1.1e-31 140.2 108 63.9
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 1.1e-31 140.2 109 64.2
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.1e-31 140.2 115 58.3
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 1.4e-31 139.8 109 61.5
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 2.4e-31 139.0 107 61.7
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 2.4e-31 139.0 117 57.3
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 3.1e-31 138.7 101 64.4
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 5.2e-31 137.9 116 58.6
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 2.0e-30 136.0 110 60.9
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 3.4e-30 135.2 114 58.8
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 9.9e-30 133.7 111 59.5
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 8.4e-29 130.6 107 61.7
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 1.4e-28 129.8 107 61.7
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 1.4e-28 129.8 107 61.7
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 9.3e-28 127.1 125 53.6
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 3.5e-27 125.2 111 55.0
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 3.5e-27 125.2 115 53.0
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 4.6e-27 124.8 111 55.0
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 7.8e-27 124.0 113 53.1
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 5.1e-26 121.3 108 54.6
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 5.1e-26 121.3 108 54.6
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 8.7e-26 120.6 106 57.5
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 8.7e-26 120.6 115 53.0
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 2.5e-25 119.0 110 54.5
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 3.3e-25 118.6 115 53.0
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 7.3e-25 117.5 79 64.6
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 1.3e-24 116.7 109 54.1
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 1.3e-24 116.7 115 51.3
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 1.6e-24 116.3 115 49.6
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 2.1e-24 115.9 107 55.1
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 4.8e-24 114.8 107 56.1
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 6.2e-24 114.4 110 52.7
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 8.1e-24 114.0 109 54.1
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 1.1e-23 113.6 108 52.8
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 1.1e-23 113.6 113 50.4
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 3.1e-23 112.1 110 51.8
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 3.1e-23 112.1 110 51.8
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 4.0e-23 111.7 109 52.3
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 5.3e-23 111.3 110 51.8
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 5.3e-23 111.3 110 51.8
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 5.3e-23 111.3 110 51.8
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 6.9e-23 110.9 114 50.0
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 1.2e-22 110.2 110 51.8
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 1.5e-22 109.8 107 55.1
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 2.6e-22 109.0 89 57.3
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 4.4e-22 108.2 78 64.1
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 4.4e-22 108.2 110 49.1
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 5.8e-22 107.8 109 49.5
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 7.6e-22 107.5 111 49.5
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 9.9e-22 107.1 81 61.7
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 9.9e-22 107.1 110 50.9
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 2.2e-21 105.9 107 51.4
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 2.9e-21 105.5 110 48.2
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 2.9e-21 105.5 110 48.2
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 3.8e-21 105.1 107 51.4
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 3.8e-21 105.1 107 53.3
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 4.9e-21 104.8 100 51.0
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 6.4e-21 104.4 107 51.4
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 8.4e-21 104.0 107 51.4
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 2.4e-20 102.4 101 50.5
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 5.4e-20 101.3 110 48.2
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 5.4e-20 101.3 107 52.3
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 5.4e-20 101.3 106 50.0
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 7.1e-20 100.9 110 50.0
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 6.0e-19 97.8 114 43.9
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 7.9e-19 97.4 103 46.6
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 1.3e-18 96.7 111 45.0
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 3.9e-18 95.1 83 55.4
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 7.3e-17 90.9 58 70.7
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 2.1e-16 89.4 77 54.5
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 2.8e-16 89.0 95 48.4
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 3.6e-16 88.6 114 42.1
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 4.8e-16 88.2 108 42.6
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 6.2e-16 87.8 77 55.8
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 8.1e-16 87.4 77 54.5
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 5.3e-15 84.7 73 54.8
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 9.0e-15 84.0 67 61.2
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 1.1e-12 77.0 60 65.0
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 1.2e-11 73.6 58 60.3
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 3.5e-11 72.0 49 63.3
BcaB07g32630 Brassica carinata HOM05D005337 ORTHO05D006567 1.9e-09 66.2 49 65.3


User provided reference genes

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