Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 6.5e-60 233.8 113 100.0
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 1.3e-20 103.2 84 63.1
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 6.6e-20 100.9 93 57.0
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 1.1e-19 100.1 95 54.7
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 3.3e-19 98.6 83 63.9
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 4.3e-19 98.2 84 64.3
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 7.3e-19 97.4 86 58.1
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 9.5e-19 97.1 75 69.3
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.2e-18 96.7 77 62.3
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 1.2e-18 96.7 74 64.9
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.1e-18 95.9 91 54.9
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 2.8e-18 95.5 64 71.9
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 8.0e-18 94.0 63 73.0
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 8.0e-18 94.0 90 54.4
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 8.0e-18 94.0 63 73.0
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 1.1e-17 93.6 63 74.6
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 1.1e-17 93.6 63 74.6
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 1.1e-17 93.6 84 60.7
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 1.1e-17 93.6 76 64.5
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.4e-17 93.2 84 57.1
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 1.4e-17 93.2 63 73.0
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 1.4e-17 93.2 76 64.5
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 1.4e-17 93.2 83 60.2
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 1.8e-17 92.8 74 64.9
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 1.8e-17 92.8 90 56.7
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 1.8e-17 92.8 69 68.1
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 2.3e-17 92.4 64 70.3
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 2.3e-17 92.4 64 71.9
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 3.1e-17 92.0 76 63.2
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 3.1e-17 92.0 89 55.1
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 3.1e-17 92.0 64 71.9
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 3.1e-17 92.0 66 68.2
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 4.0e-17 91.7 74 64.9
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 4.0e-17 91.7 77 61.0
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 4.0e-17 91.7 65 66.2
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 4.0e-17 91.7 64 70.3
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 5.2e-17 91.3 63 73.0
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 5.2e-17 91.3 89 53.9
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 5.2e-17 91.3 89 55.1
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 6.8e-17 90.9 63 69.8
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 6.8e-17 90.9 63 73.0
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 6.8e-17 90.9 64 70.3
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 6.8e-17 90.9 60 75.0
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 6.8e-17 90.9 82 59.8
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 8.9e-17 90.5 63 69.8
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 8.9e-17 90.5 97 48.5
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 8.9e-17 90.5 63 73.0
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 1.2e-16 90.1 61 70.5
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 1.2e-16 90.1 84 57.1
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.2e-16 90.1 64 70.3
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 1.2e-16 90.1 64 70.3
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 1.5e-16 89.7 74 63.5
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 1.5e-16 89.7 91 53.8
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.5e-16 89.7 68 64.7
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.5e-16 89.7 68 64.7
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.5e-16 89.7 61 72.1
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.5e-16 89.7 61 72.1
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.5e-16 89.7 61 72.1
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.5e-16 89.7 68 63.2
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.5e-16 89.7 64 70.3
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 2.0e-16 89.4 76 63.2
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 2.0e-16 89.4 63 71.4
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 2.6e-16 89.0 84 56.0
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 2.6e-16 89.0 64 70.3
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 3.4e-16 88.6 63 71.4
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 3.4e-16 88.6 86 55.8
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.4e-16 88.6 68 61.8
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 3.4e-16 88.6 63 71.4
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 3.4e-16 88.6 61 75.4
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 3.4e-16 88.6 68 64.7
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 4.4e-16 88.2 61 70.5
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 5.8e-16 87.8 66 63.6
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 5.8e-16 87.8 63 69.8
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 7.5e-16 87.4 60 71.7
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 9.8e-16 87.0 63 69.8
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 9.8e-16 87.0 63 69.8
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 9.8e-16 87.0 71 64.8
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 9.8e-16 87.0 63 69.8
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 9.8e-16 87.0 71 62.0
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.3e-15 86.7 61 72.1
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.3e-15 86.7 61 72.1
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 1.3e-15 86.7 63 69.8
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 1.7e-15 86.3 54 75.9
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 1.7e-15 86.3 66 62.1
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 1.7e-15 86.3 66 62.1
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 2.2e-15 85.9 79 57.0
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 2.2e-15 85.9 59 72.9
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.9e-15 85.5 79 58.2
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.9e-15 85.5 79 58.2
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 2.9e-15 85.5 79 58.2
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 3.7e-15 85.1 79 53.2
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 3.7e-15 85.1 79 53.2
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 3.7e-15 85.1 68 64.7
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 3.7e-15 85.1 79 59.5
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 4.9e-15 84.7 79 53.2
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 4.9e-15 84.7 79 53.2
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 4.9e-15 84.7 79 53.2
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 4.9e-15 84.7 77 57.1
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 4.9e-15 84.7 63 68.3
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 4.9e-15 84.7 61 68.9
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 6.4e-15 84.3 63 68.3
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 1.1e-14 83.6 61 67.2
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.4e-14 83.2 80 55.0
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.4e-14 83.2 60 70.0
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 1.9e-14 82.8 58 63.8
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 1.9e-14 82.8 58 63.8
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 1.9e-14 82.8 58 63.8
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 1.9e-14 82.8 58 63.8
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 1.9e-14 82.8 58 63.8
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 1.9e-14 82.8 76 59.2
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 2.4e-14 82.4 56 67.9
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.4e-14 82.4 93 49.5
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.4e-14 82.4 93 49.5
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 2.4e-14 82.4 63 68.3
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 3.2e-14 82.0 55 69.1
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 3.2e-14 82.0 72 58.3
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 4.1e-14 81.6 85 56.5
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 4.1e-14 81.6 57 70.2
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 4.1e-14 81.6 77 55.8
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 5.4e-14 81.3 63 65.1
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 1.2e-13 80.1 65 63.1
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.6e-13 79.7 58 65.5
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 1.6e-13 79.7 76 53.9
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 2.0e-13 79.3 62 64.5
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 2.7e-13 79.0 57 66.7
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 2.7e-13 79.0 57 66.7
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 2.7e-13 79.0 57 66.7
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 2.7e-13 79.0 98 50.0
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 2.7e-13 79.0 57 66.7
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 3.5e-13 78.6 60 66.7
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 3.5e-13 78.6 60 66.7
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 4.6e-13 78.2 57 66.7
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 4.6e-13 78.2 79 48.1
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 7.8e-13 77.4 90 46.7
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 1.0e-12 77.0 79 54.4
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.3e-12 76.6 67 59.7
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 1.3e-12 76.6 95 50.5
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 1.7e-12 76.3 76 55.3
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 2.3e-12 75.9 59 57.6
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 2.3e-12 75.9 59 59.3
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 3.0e-12 75.5 57 64.9
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 3.0e-12 75.5 57 64.9
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 3.9e-12 75.1 61 65.6
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 5.0e-12 74.7 49 75.5
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.1e-11 73.6 62 54.8
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.1e-11 73.6 62 54.8
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 1.5e-11 73.2 61 57.4
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 1.9e-11 72.8 60 55.0
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 1.9e-11 72.8 60 55.0
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 1.9e-11 72.8 60 55.0
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 1.9e-11 72.8 87 50.6
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 2.5e-11 72.4 61 60.7
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 4.3e-11 71.6 71 46.5
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 1.2e-10 70.1 60 55.0
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 1.2e-10 70.1 60 55.0
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 5.2e-09 64.7 50 58.0
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 2.9e-07 58.9 69 43.5


User provided reference genes

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