Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 1.0e-44 183.0 89 100.0
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 9.4e-38 159.8 86 87.2
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 9.4e-38 159.8 86 87.2
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.1e-37 158.7 81 91.4
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 1.4e-36 156.0 87 87.4
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 3.9e-36 154.5 89 86.5
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 6.7e-36 153.7 87 85.1
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 1.5e-35 152.5 88 87.5
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 2.6e-35 151.8 93 81.7
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 2.6e-35 151.8 93 81.7
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 2.6e-35 151.8 93 80.6
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 3.3e-35 151.4 93 80.6
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 4.4e-35 151.0 93 80.6
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 4.4e-35 151.0 93 80.6
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 4.4e-35 151.0 93 79.6
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 9.7e-35 149.8 93 80.6
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 9.7e-35 149.8 93 80.6
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 9.7e-35 149.8 87 82.8
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 1.3e-34 149.4 78 89.7
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 1.3e-34 149.4 95 76.8
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 1.3e-34 149.4 95 76.8
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 1.7e-34 149.1 93 77.4
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.7e-34 149.1 81 85.2
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 1.7e-34 149.1 93 78.5
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 2.2e-34 148.7 93 79.6
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 2.2e-34 148.7 93 78.5
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 2.2e-34 148.7 81 86.4
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 2.2e-34 148.7 78 88.5
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 2.8e-34 148.3 92 79.3
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 2.8e-34 148.3 78 88.5
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.8e-34 148.3 90 81.1
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 3.7e-34 147.9 88 78.4
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 3.7e-34 147.9 88 78.4
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 4.8e-34 147.5 93 80.6
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 4.8e-34 147.5 92 79.3
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 4.8e-34 147.5 78 88.5
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 4.8e-34 147.5 92 80.4
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 4.8e-34 147.5 87 81.6
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 4.8e-34 147.5 78 88.5
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 4.8e-34 147.5 78 88.5
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 6.3e-34 147.1 93 79.6
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 6.3e-34 147.1 93 79.6
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 6.3e-34 147.1 93 79.6
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 6.3e-34 147.1 91 80.2
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 6.3e-34 147.1 93 77.4
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 6.3e-34 147.1 93 77.4
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 8.2e-34 146.7 93 80.6
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 1.1e-33 146.4 93 78.5
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 1.1e-33 146.4 81 85.2
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 1.1e-33 146.4 87 80.5
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.8e-33 145.6 78 85.9
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 1.8e-33 145.6 93 79.6
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 1.8e-33 145.6 93 78.5
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 1.8e-33 145.6 93 78.5
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 2.4e-33 145.2 92 81.5
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 2.4e-33 145.2 78 85.9
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 2.4e-33 145.2 78 87.2
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 3.1e-33 144.8 78 87.2
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 3.1e-33 144.8 78 87.2
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 3.1e-33 144.8 87 79.3
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 3.1e-33 144.8 93 79.6
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 3.1e-33 144.8 87 79.3
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 4.1e-33 144.4 78 85.9
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 4.1e-33 144.4 78 84.6
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 4.1e-33 144.4 87 80.5
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 4.1e-33 144.4 93 77.4
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 4.1e-33 144.4 81 84.0
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 5.3e-33 144.1 75 88.0
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 5.3e-33 144.1 93 78.5
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 5.3e-33 144.1 79 87.3
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 5.3e-33 144.1 91 78.0
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 5.3e-33 144.1 91 78.0
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 7.0e-33 143.7 78 85.9
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 7.0e-33 143.7 90 82.2
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 7.0e-33 143.7 87 78.2
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 7.0e-33 143.7 87 79.3
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 7.0e-33 143.7 93 77.4
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 9.1e-33 143.3 79 84.8
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 9.1e-33 143.3 92 78.3
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 9.1e-33 143.3 93 78.5
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.2e-32 142.9 87 75.9
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 1.2e-32 142.9 78 85.9
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 1.2e-32 142.9 93 77.4
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 1.6e-32 142.5 87 75.9
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.6e-32 142.5 87 75.9
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 1.6e-32 142.5 81 81.5
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 2.0e-32 142.1 78 83.3
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 2.0e-32 142.1 78 83.3
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 2.0e-32 142.1 78 83.3
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 2.0e-32 142.1 78 84.6
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 2.0e-32 142.1 79 82.3
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.0e-32 142.1 85 77.6
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 2.6e-32 141.7 87 78.2
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 2.6e-32 141.7 93 77.4
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 2.6e-32 141.7 93 73.1
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 2.6e-32 141.7 81 81.5
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.5e-32 141.4 93 73.1
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.5e-32 141.4 93 73.1
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 4.5e-32 141.0 93 76.3
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 5.9e-32 140.6 78 84.6
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 5.9e-32 140.6 93 76.3
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 5.9e-32 140.6 86 76.7
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 1.0e-31 139.8 93 72.0
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 1.0e-31 139.8 93 76.3
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 1.3e-31 139.4 81 79.0
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 1.3e-31 139.4 81 79.0
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 1.3e-31 139.4 81 79.0
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 1.3e-31 139.4 81 79.0
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 1.3e-31 139.4 81 79.0
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 1.3e-31 139.4 87 77.0
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.3e-31 139.4 87 73.6
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 1.3e-31 139.4 78 84.6
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 1.7e-31 139.0 78 82.1
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 1.7e-31 139.0 78 82.1
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 1.7e-31 139.0 78 84.6
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 1.7e-31 139.0 87 73.6
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 2.2e-31 138.7 91 78.0
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 2.2e-31 138.7 78 83.3
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 2.9e-31 138.3 78 82.1
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.9e-31 138.3 93 71.0
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 2.9e-31 138.3 80 83.8
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 3.8e-31 137.9 81 80.2
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 3.8e-31 137.9 87 77.0
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 8.5e-31 136.7 78 80.8
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 8.5e-31 136.7 70 91.4
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 1.1e-30 136.3 78 80.8
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 1.5e-30 136.0 81 77.8
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 1.9e-30 135.6 83 79.5
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 9.4e-30 133.3 88 75.0
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.1e-29 132.1 71 87.3
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 2.7e-29 131.7 120 60.0
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 4.7e-29 131.0 71 84.5
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 4.7e-29 131.0 70 88.6
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 1.4e-28 129.4 71 85.9
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 1.8e-28 129.0 70 84.3
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 2.3e-28 128.6 70 87.1
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.3e-28 128.6 71 85.9
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 2.6e-27 125.2 70 84.3
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 5.7e-27 124.0 70 82.9
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 1.3e-26 122.9 89 71.9
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.7e-26 122.5 116 59.5
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 9.1e-25 116.7 71 77.5
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 1.2e-24 116.3 68 79.4
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 1.7e-23 112.5 71 77.5
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 3.2e-22 108.2 71 74.6
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 9.4e-22 106.7 82 68.3
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 2.3e-20 102.1 61 80.3
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 2.3e-20 102.1 93 60.2
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 3.4e-19 98.2 98 59.2
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 7.5e-19 97.1 76 61.8
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.3e-18 96.3 51 86.3
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.3e-18 96.3 51 86.3
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.3e-18 96.3 51 86.3
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.3e-18 96.3 51 86.3
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 1.7e-18 95.9 76 61.8
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 2.8e-18 95.1 67 68.7
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 6.3e-18 94.0 58 77.6
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.5e-16 87.8 49 83.7
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.7e-16 87.0 47 80.9
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 2.3e-15 85.5 89 57.3
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 8.6e-15 83.6 48 81.2
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 1.5e-14 82.8 49 81.6
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 1.6e-13 79.3 86 47.7
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 4.0e-12 74.7 54 68.5
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 4.0e-12 74.7 61 57.4
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 2.0e-08 62.4 44 75.0
MCO03G283 Micromonas commoda HOM05D004240 ORTHO05D005082 3.3e-06 55.1 56 48.2


User provided reference genes

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