Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 3.0e-171 605.1 312 100.0
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.6e-121 439.9 300 73.3
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 6.3e-121 438.0 300 73.0
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 2.4e-120 436.0 299 71.6
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 5.3e-120 434.9 303 72.9
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 6.9e-120 434.5 310 69.0
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 9.0e-120 434.1 300 70.7
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 1.2e-119 433.7 304 72.4
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 3.4e-119 432.2 300 72.7
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 1.0e-118 430.6 300 71.3
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 1.0e-118 430.6 307 71.0
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 2.9e-118 429.1 301 69.8
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 3.8e-118 428.7 312 67.6
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 5.0e-118 428.3 303 71.0
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 5.0e-118 428.3 301 70.4
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 8.5e-118 427.6 309 69.3
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 1.4e-117 426.8 301 69.4
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 1.4e-117 426.8 311 67.5
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 1.4e-117 426.8 311 67.5
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 2.5e-117 426.0 301 70.1
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 2.5e-117 426.0 312 67.0
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 4.2e-117 425.2 312 68.3
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 4.2e-117 425.2 299 70.6
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 4.2e-117 425.2 303 70.0
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 5.5e-117 424.9 312 67.6
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 5.5e-117 424.9 312 67.6
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 5.5e-117 424.9 322 67.1
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 7.2e-117 424.5 312 67.6
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 7.2e-117 424.5 300 69.7
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 9.4e-117 424.1 303 69.6
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 9.4e-117 424.1 312 69.2
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 1.2e-116 423.7 312 65.7
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 1.2e-116 423.7 309 68.0
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 2.7e-116 422.5 312 67.3
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 4.6e-116 421.8 302 70.2
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 6.1e-116 421.4 301 68.8
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 6.1e-116 421.4 302 70.2
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 6.1e-116 421.4 298 70.8
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 2.3e-115 419.5 302 69.2
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 3.0e-115 419.1 301 68.1
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 3.0e-115 419.1 303 68.6
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 3.0e-115 419.1 303 69.0
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 3.9e-115 418.7 312 66.0
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 8.8e-115 417.5 301 69.1
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 1.5e-114 416.8 316 66.8
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 2.6e-114 416.0 303 69.6
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 2.6e-114 416.0 303 69.3
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 3.3e-114 415.6 303 69.3
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 4.4e-114 415.2 301 68.1
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 4.4e-114 415.2 312 67.9
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 5.7e-114 414.8 301 68.4
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 7.4e-114 414.5 301 67.4
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 7.4e-114 414.5 305 68.9
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 9.7e-114 414.1 298 68.8
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 4.8e-113 411.8 301 68.1
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 1.1e-112 410.6 316 65.8
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 1.1e-112 410.6 313 66.1
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 1.4e-112 410.2 296 68.9
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 2.4e-112 409.5 316 65.8
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 4.1e-112 408.7 301 67.1
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 5.3e-112 408.3 316 65.2
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 1.5e-111 406.8 283 70.7
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 1.5e-111 406.8 298 68.5
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 2.0e-111 406.4 313 65.8
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 3.4e-111 405.6 313 65.8
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 5.9e-111 404.8 296 66.9
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 1.3e-110 403.7 332 63.9
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 5.0e-110 401.7 289 68.9
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 8.5e-110 401.0 302 67.2
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 1.9e-109 399.8 297 67.7
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 3.2e-109 399.1 298 66.4
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 5.5e-109 398.3 303 67.0
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.9e-107 392.1 311 64.0
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 4.4e-106 388.7 356 57.3
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 1.7e-105 386.7 333 61.0
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 2.4e-104 382.9 309 63.1
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 3.1e-104 382.5 377 55.7
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 9.1e-104 380.9 301 64.8
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 8.5e-102 374.4 263 71.5
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 6.7e-99 364.8 301 63.5
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 1.5e-98 363.6 305 63.0
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 2.0e-98 363.2 280 65.4
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 4.5e-95 352.1 300 60.3
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 1.0e-94 350.9 288 64.9
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 8.5e-94 347.8 311 59.2
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 1.1e-93 347.4 299 60.2
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 1.2e-92 344.0 301 61.8
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 1.2e-92 344.0 299 61.2
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 2.1e-92 343.2 314 56.1
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 2.1e-92 343.2 300 57.0
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.6e-87 327.0 298 56.7
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.0e-86 324.3 261 62.5
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 7.2e-85 318.2 219 73.1
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 1.0e-83 314.3 206 75.2
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 4.0e-83 312.4 204 74.5
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 5.2e-83 312.0 205 74.6
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 8.8e-83 311.2 216 71.3
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 1.8e-80 303.5 214 70.6
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 1.8e-80 303.5 204 76.0
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 4.1e-80 302.4 328 50.3
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 5.9e-79 298.5 219 68.5
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 1.9e-77 293.5 204 71.6
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 1.7e-73 280.4 186 73.1
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.2e-71 274.2 308 49.7
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 2.1e-68 263.5 283 51.6
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 1.4e-59 234.2 324 44.1
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 6.8e-59 231.9 161 69.6
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 1.3e-54 217.6 162 65.4
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 2.9e-49 199.9 399 35.3
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 7.1e-48 195.3 222 47.7
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 9.2e-48 194.9 218 50.0
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.6e-47 194.1 138 69.6
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 2.0e-34 150.6 296 33.1
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 6.7e-30 135.6 150 50.0
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.1e-29 134.8 88 69.3
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 3.3e-29 133.3 144 51.4
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 4.5e-26 122.9 93 64.5
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 8.4e-25 118.6 117 52.1
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 4.2e-24 116.3 292 32.5
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 4.2e-24 116.3 135 49.6
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 2.3e-22 110.5 75 74.7
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 3.0e-22 110.2 96 55.2
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 5.1e-22 109.4 77 71.4
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 1.1e-21 108.2 81 66.7
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 2.5e-21 107.1 73 74.0
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.8e-12 77.0 49 71.4
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 9.3e-08 62.0 111 32.4
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 6.1e-07 59.3 126 32.5
A06p45100 Brassica napus HOM05D003894 ORTHO05D004584 6.7e-06 55.8 106 33.0
BraA06t27379Z Brassica rapa HOM05D003894 ORTHO05D004584 6.7e-06 55.8 106 33.0


User provided reference genes

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