Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g11751 Utricularia gibba HOM05D001151 ORTHO05D001504 5.4e-93 344.4 180 100.0
SGA_v2.0_scaffold57G20237 Striga asiatica HOM05D001151 ORTHO05D001504 2.8e-12 76.3 183 34.4
PGR004G2765 Punica granatum HOM05D001151 ORTHO05D001504 4.7e-12 75.5 163 33.1
Cc03_g02290 Coffea canephora HOM05D001151 ORTHO05D001504 2.3e-11 73.2 176 34.7
Lsat_1_v5_gn_5_50201 Lactuca sativa HOM05D001151 ORTHO05D001504 2.3e-11 73.2 161 35.4
HanXRQChr13g0410881 Helianthus annuus HOM05D001151 ORTHO05D001504 5.2e-11 72.0 164 35.4
Oeu021625.1 Olea europaea HOM05D001151 ORTHO05D001504 5.2e-11 72.0 186 34.4
Oeu026200.1 Olea europaea HOM05D001151 ORTHO05D001504 5.2e-11 72.0 193 34.7
MSTRG.21812 Avicennia marina HOM05D001151 ORTHO05D001504 8.9e-11 71.2 181 35.4
MSTRG.24778 Avicennia marina HOM05D001151 ORTHO05D001504 8.9e-11 71.2 173 34.7
HanXRQChr03g0080161 Helianthus annuus HOM05D001151 ORTHO05D001504 1.2e-10 70.9 178 34.3
MSTRG.10059 Avicennia marina HOM05D001151 ORTHO05D001504 1.5e-10 70.5 178 33.1
Lj6A670T85 Lonicera japonica HOM05D001151 ORTHO05D001504 2.0e-10 70.1 173 34.1
MBI18_g31498_MAGBIO Magnolia biondii HOM05D001151 ORTHO05D001504 2.0e-10 70.1 173 31.8
SGA_v2.0_scaffold86G26832 Striga asiatica HOM05D001151 ORTHO05D001504 2.0e-10 70.1 180 33.3
DCAR_002445 Daucus carota HOM05D001151 ORTHO05D001504 3.4e-10 69.3 182 32.4
Actinidia00049 Actinidia chinensis HOM05D001151 ORTHO05D001504 4.4e-10 68.9 179 31.8
HanXRQChr03g0080151 Helianthus annuus HOM05D001151 ORTHO05D001504 4.4e-10 68.9 195 32.3
Lsat_1_v5_gn_5_50161 Lactuca sativa HOM05D001151 ORTHO05D001504 5.8e-10 68.6 172 36.0
MSTRG.3950 Avicennia marina HOM05D001151 ORTHO05D001504 9.8e-10 67.8 161 32.9
Zm00001eb305660 Zea mays HOM05D001151 ORTHO05D001504 9.8e-10 67.8 177 29.9
vmacro15255 Vaccinium macrocarpon HOM05D001151 ORTHO05D001504 2.9e-09 66.2 155 32.3
vmacro22598 Vaccinium macrocarpon HOM05D001151 ORTHO05D001504 2.9e-09 66.2 155 32.3
Zm00001eb094710 Zea mays HOM05D001151 ORTHO05D001504 2.9e-09 66.2 163 30.1
DCAR_024546 Daucus carota HOM05D001151 ORTHO05D001504 6.4e-09 65.1 162 30.2
Actinidia14319 Actinidia chinensis HOM05D001151 ORTHO05D001504 8.3e-09 64.7 174 31.0
Gohir.A09G233500 Gossypium hirsutum HOM05D001151 ORTHO05D001504 1.1e-08 64.3 170 28.8
Manes.15G016400 Manihot esculenta HOM05D001151 ORTHO05D001504 1.1e-08 64.3 177 31.1
THA.LOC104818843 Tarenaya hassleriana HOM05D001151 ORTHO05D001504 1.1e-08 64.3 154 33.8
Gorai.006G257500 Gossypium raimondii HOM05D001151 ORTHO05D001504 1.4e-08 63.9 170 30.0
Rhsim04G0216700 Rhododendron simsii HOM05D001151 ORTHO05D001504 1.4e-08 63.9 174 31.6
THA.LOC104820241 Tarenaya hassleriana HOM05D001151 ORTHO05D001504 1.4e-08 63.9 186 32.8
CSS0011260 Camellia sinensis var. sinensis HOM05D001151 ORTHO05D001504 1.9e-08 63.5 155 34.8
CSS0017094 Camellia sinensis var. sinensis HOM05D001151 ORTHO05D001504 1.9e-08 63.5 155 34.8
Gohir.D09G234600 Gossypium hirsutum HOM05D001151 ORTHO05D001504 1.9e-08 63.5 170 30.0
Lsat_1_v5_gn_5_50121 Lactuca sativa HOM05D001151 ORTHO05D001504 1.9e-08 63.5 159 35.2
Os07g0442900 Oryza sativa ssp. japonica HOM05D001151 ORTHO05D001504 1.9e-08 63.5 181 28.7
Duzib212G0620 Durio zibethinus HOM05D001151 ORTHO05D001504 2.4e-08 63.2 198 28.8
SalBow2G0349 Salvia bowleyana HOM05D001151 ORTHO05D001504 2.4e-08 63.2 161 33.5
Sopen01g029100 Solanum pennellii HOM05D001151 ORTHO05D001504 2.4e-08 63.2 175 30.9
Lsat_1_v5_gn_5_50820 Lactuca sativa HOM05D001151 ORTHO05D001504 3.2e-08 62.8 162 34.6
PGSC0003DMG400022659 Solanum tuberosum HOM05D001151 ORTHO05D001504 3.2e-08 62.8 178 30.3
BcaC06g33419 Brassica carinata HOM05D001151 ORTHO05D001504 5.4e-08 62.0 157 33.1
TWI53G0843 Tripterygium wilfordii HOM05D001151 ORTHO05D001504 5.4e-08 62.0 181 29.3
Actinidia40227 Actinidia chinensis HOM05D001151 ORTHO05D001504 9.2e-08 61.2 173 31.8
Nitab4.5_0000829g0040 Nicotiana tabacum HOM05D001151 ORTHO05D001504 1.2e-07 60.8 177 31.1
Solyc01g067300.3 Solanum lycopersicum HOM05D001151 ORTHO05D001504 1.2e-07 60.8 174 31.6
vmacro08199 Vaccinium macrocarpon HOM05D001151 ORTHO05D001504 1.2e-07 60.8 115 38.3
ECA240G4474 Erigeron canadensis HOM05D001151 ORTHO05D001504 1.6e-07 60.5 167 32.9
Migut.G00205 Erythranthe guttata HOM05D001151 ORTHO05D001504 2.0e-07 60.1 178 31.5
Lsat_1_v5_gn_5_51020 Lactuca sativa HOM05D001151 ORTHO05D001504 2.0e-07 60.1 196 30.1
CSS0014959 Camellia sinensis var. sinensis HOM05D001151 ORTHO05D001504 2.7e-07 59.7 160 31.9
EL10Ac3g06571 Beta vulgaris HOM05D001151 ORTHO05D001504 3.5e-07 59.3 175 31.4
A03p49200 Brassica napus HOM05D001151 ORTHO05D001504 3.5e-07 59.3 157 32.5
BraA03t14019Z Brassica rapa HOM05D001151 ORTHO05D001504 3.5e-07 59.3 157 32.5
CARHR080920 Cardamine hirsuta HOM05D001151 ORTHO05D001504 3.5e-07 59.3 152 32.9
HPP92_018398 Vanilla planifolia HOM05D001151 ORTHO05D001504 3.5e-07 59.3 155 30.3
AUR62041204 Chenopodium quinoa HOM05D001151 ORTHO05D001504 4.6e-07 58.9 183 29.5
TAR362G1028 Trochodendron aralioides HOM05D001151 ORTHO05D001504 4.6e-07 58.9 182 29.7
Ciclev10005986m.g Citrus clementina HOM05D001151 ORTHO05D001504 6.0e-07 58.5 164 29.9
Carub.0007s2620 Capsella rubella HOM05D001151 ORTHO05D001504 7.8e-07 58.2 160 31.9
HanXRQChr12g0366261 Helianthus annuus HOM05D001151 ORTHO05D001504 7.8e-07 58.2 161 33.5
Glyma.17G023000 Glycine max HOM05D001151 ORTHO05D001504 1.0e-06 57.8 170 31.8
Oeu062890.2 Olea europaea HOM05D001151 ORTHO05D001504 1.3e-06 57.4 115 39.1
AT4G15610 Arabidopsis thaliana HOM05D001151 ORTHO05D001504 1.7e-06 57.0 159 32.7
Glyma.07G251300 Glycine max HOM05D001151 ORTHO05D001504 1.7e-06 57.0 174 31.6
Lsat_1_v5_gn_5_50001 Lactuca sativa HOM05D001151 ORTHO05D001504 1.7e-06 57.0 165 30.9
Lsat_1_v5_gn_5_51120 Lactuca sativa HOM05D001151 ORTHO05D001504 1.7e-06 57.0 196 30.1
AL3G17340 Arabidopsis lyrata HOM05D001151 ORTHO05D001504 2.3e-06 56.6 151 30.5
Glyma.13G215500 Glycine max HOM05D001151 ORTHO05D001504 3.0e-06 56.2 147 32.0
Peaxi162Scf00386g00921 Petunia axillaris HOM05D001151 ORTHO05D001504 3.0e-06 56.2 160 32.5
BcaC05g29813 Brassica carinata HOM05D001151 ORTHO05D001504 3.9e-06 55.8 152 30.3
BolC5t34742H Brassica oleracea HOM05D001151 ORTHO05D001504 3.9e-06 55.8 152 30.3
AL7G39840 Arabidopsis lyrata HOM05D001151 ORTHO05D001504 5.0e-06 55.5 159 32.1
AT3G06390 Arabidopsis thaliana HOM05D001151 ORTHO05D001504 5.0e-06 55.5 152 30.3
Eucgr.B01267 Eucalyptus grandis HOM05D001151 ORTHO05D001504 5.0e-06 55.5 174 26.4
HanXRQChr13g0387581 Helianthus annuus HOM05D001151 ORTHO05D001504 5.0e-06 55.5 117 38.5
BcaC05g30031 Brassica carinata HOM05D001151 ORTHO05D001504 6.6e-06 55.1 148 30.4
Thecc.04G278200 Theobroma cacao HOM05D001151 ORTHO05D001504 6.6e-06 55.1 165 29.1
Aa31LG5G16910 Aethionema arabicum HOM05D001151 ORTHO05D001504 8.6e-06 54.7 149 30.9
COL.COLO4_13923 Corchorus olitorius HOM05D001151 ORTHO05D001504 8.6e-06 54.7 181 28.2
VMungo0540G2050 Vigna mungo HOM05D001151 ORTHO05D001504 8.6e-06 54.7 147 32.7


User provided reference genes

Program Settings