Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g11684 Utricularia gibba HOM05D000131 ORTHO05D030807 2.4e-63 245.4 126 100.0
MSTRG.9836 Avicennia marina HOM05D000131 ORTHO05D000086 2.9e-16 89.0 93 57.0
Actinidia11391 Actinidia chinensis HOM05D000131 ORTHO05D000086 3.3e-12 75.5 91 49.5
MSTRG.4205 Avicennia marina HOM05D000131 ORTHO05D000086 4.3e-12 75.1 86 52.3
Hma1.2p1_1076F.1_g254640 Hydrangea macrophylla HOM05D000131 ORTHO05D000086 4.3e-12 75.1 86 53.5
Actinidia39951 Actinidia chinensis HOM05D000131 ORTHO05D000086 9.6e-12 73.9 86 52.3
SalBow2G2238 Salvia bowleyana HOM05D000131 ORTHO05D000086 2.1e-11 72.8 55 70.9
SalBow3G3628 Salvia bowleyana HOM05D000131 ORTHO05D000086 2.1e-11 72.8 66 62.1
Prupe.1G060900 Prunus persica HOM05D000131 ORTHO05D000086 4.8e-11 71.6 103 44.7
Migut.N00338 Erythranthe guttata HOM05D000131 ORTHO05D000086 8.1e-11 70.9 83 50.6
Oeu023927.1 Olea europaea HOM05D000131 ORTHO05D000086 8.1e-11 70.9 53 71.7
TAR633G1159 Trochodendron aralioides HOM05D000131 ORTHO05D000086 8.1e-11 70.9 86 51.2
Gohir.A09G202300 Gossypium hirsutum HOM05D000131 ORTHO05D000086 2.4e-10 69.3 105 47.6
Gohir.D09G196300 Gossypium hirsutum HOM05D000131 ORTHO05D000086 2.4e-10 69.3 105 47.6
Gorai.006G219800 Gossypium raimondii HOM05D000131 ORTHO05D000086 2.4e-10 69.3 105 47.6
Sp3g22440 Schrenkiella parvula HOM05D000131 ORTHO05D000086 4.0e-10 68.6 92 43.5
Potri.001G052300 Populus trichocarpa HOM05D000131 ORTHO05D000086 6.9e-10 67.8 94 44.7
CSS0013776 Camellia sinensis var. sinensis HOM05D000131 ORTHO05D000086 1.5e-09 66.6 101 43.6
CSS0015200 Camellia sinensis var. sinensis HOM05D000131 ORTHO05D000086 1.5e-09 66.6 101 43.6
HanXRQChr14g0435101 Helianthus annuus HOM05D000131 ORTHO05D000086 1.5e-09 66.6 85 45.9
Duzib151G0061 Durio zibethinus HOM05D000131 ORTHO05D000086 2.0e-09 66.2 97 46.4
RcHm_v2.0_Chr4g0396921 Rosa chinensis HOM05D000131 ORTHO05D000086 2.0e-09 66.2 99 43.4
Hma1.2p1_0903F.1_g235150 Hydrangea macrophylla HOM05D000131 ORTHO05D000086 2.6e-09 65.9 86 45.3
Sabra03G0128800 Salix brachista HOM05D000131 ORTHO05D000086 2.6e-09 65.9 65 58.5
MD15G1125900 Malus domestica HOM05D000131 ORTHO05D000086 3.4e-09 65.5 111 37.8
Haze_24768 Corylus avellana HOM05D000131 ORTHO05D000086 4.5e-09 65.1 84 44.0
DCAR_027372 Daucus carota HOM05D000131 ORTHO05D000086 4.5e-09 65.1 89 50.6
Thecc.04G211500 Theobroma cacao HOM05D000131 ORTHO05D000086 4.5e-09 65.1 97 45.4
DCAR_030780 Daucus carota HOM05D000131 ORTHO05D000086 5.8e-09 64.7 83 44.6
Oeu022331.1 Olea europaea HOM05D000131 ORTHO05D000086 5.8e-09 64.7 94 43.6
Rhsim02G0053200 Rhododendron simsii HOM05D000131 ORTHO05D000086 5.8e-09 64.7 94 42.6
Thecc.01G229600 Theobroma cacao HOM05D000131 ORTHO05D000086 9.9e-09 63.9 63 54.0
TAR636G3395 Trochodendron aralioides HOM05D000131 ORTHO05D000086 9.9e-09 63.9 85 45.9
COL.COLO4_34081 Corchorus olitorius HOM05D000131 ORTHO05D000086 1.3e-08 63.5 65 58.5
MD16G1236000 Malus domestica HOM05D000131 ORTHO05D000086 1.3e-08 63.5 103 38.8
Aqoxy2G03808 Aquilegia oxysepala HOM05D000131 ORTHO05D000086 1.7e-08 63.2 100 45.0
Cfa002540 Carpinus fangiana HOM05D000131 ORTHO05D000086 2.2e-08 62.8 84 42.9
DCAR_004709 Daucus carota HOM05D000131 ORTHO05D000086 2.2e-08 62.8 57 56.1
Duzib133G1509 Durio zibethinus HOM05D000131 ORTHO05D000086 2.2e-08 62.8 87 44.8
Manes.03G152600 Manihot esculenta HOM05D000131 ORTHO05D000086 2.2e-08 62.8 98 41.8
Actinidia37578 Actinidia chinensis HOM05D000131 ORTHO05D000086 2.9e-08 62.4 61 57.4
Gohir.A10G121300 Gossypium hirsutum HOM05D000131 ORTHO05D000086 2.9e-08 62.4 93 46.2
Oeu006716.3 Olea europaea HOM05D000131 ORTHO05D000086 2.9e-08 62.4 94 43.6
Dinv29556 Davidia involucrata HOM05D000131 ORTHO05D000086 3.8e-08 62.0 86 46.5
Duzib212G0632 Durio zibethinus HOM05D000131 ORTHO05D000086 4.9e-08 61.6 65 56.9
Gohir.A11G135800 Gossypium hirsutum HOM05D000131 ORTHO05D000086 4.9e-08 61.6 84 44.0
Gohir.D07G161400 Gossypium hirsutum HOM05D000131 ORTHO05D000086 4.9e-08 61.6 86 40.7
Gorai.007G152500 Gossypium raimondii HOM05D000131 ORTHO05D000086 4.9e-08 61.6 84 44.0
PGR044G0489 Punica granatum HOM05D000131 ORTHO05D000086 4.9e-08 61.6 102 40.2
Actinidia37395 Actinidia chinensis HOM05D000131 ORTHO05D030807 6.4e-08 61.2 104 45.2
Potri.003G175900 Populus trichocarpa HOM05D000131 ORTHO05D000086 6.4e-08 61.2 92 45.7
Sed0017855 Sechium edule HOM05D000131 ORTHO05D000086 6.4e-08 61.2 95 38.9
TAR362G0384 Trochodendron aralioides HOM05D000131 ORTHO05D000086 6.4e-08 61.2 68 52.9
GSVIVG01029048001 Vitis vinifera HOM05D000131 ORTHO05D000086 6.4e-08 61.2 86 45.3
Carub.0003s2508 Capsella rubella HOM05D000131 ORTHO05D000086 8.4e-08 60.8 109 40.4
CAN.G133.6 Capsicum annuum HOM05D000131 ORTHO05D000086 8.4e-08 60.8 85 44.7
CiPaw.04G107400 Carya illinoinensis HOM05D000131 ORTHO05D000086 8.4e-08 60.8 88 46.6
Oeu020387.1 Olea europaea HOM05D000131 ORTHO05D000086 8.4e-08 60.8 64 53.1
Atru.chr5.1995 Acer truncatum HOM05D000131 ORTHO05D000086 1.1e-07 60.5 82 43.9
QL06p023258 Quercus lobata HOM05D000131 ORTHO05D000086 1.1e-07 60.5 87 42.5
vmacro15502 Vaccinium macrocarpon HOM05D000131 ORTHO05D000086 1.1e-07 60.5 38 71.1
Gohir.D10G145000 Gossypium hirsutum HOM05D000131 ORTHO05D000086 1.4e-07 60.1 93 47.3
Hund19252 Selenicereus undatus HOM05D000131 ORTHO05D000086 1.4e-07 60.1 94 39.4
AL3G40290 Arabidopsis lyrata HOM05D000131 ORTHO05D000086 1.9e-07 59.7 69 44.9
AT3G24670 Arabidopsis thaliana HOM05D000131 ORTHO05D000086 1.9e-07 59.7 65 49.2
CAN.G500.96 Capsicum annuum HOM05D000131 ORTHO05D000086 1.9e-07 59.7 87 43.7
Cc03_g07230 Coffea canephora HOM05D000131 ORTHO05D000086 1.9e-07 59.7 93 43.0
Dinv19225 Davidia involucrata HOM05D000131 ORTHO05D000086 1.9e-07 59.7 86 46.5
Duzib211G0664 Durio zibethinus HOM05D000131 ORTHO05D000086 1.9e-07 59.7 62 50.0
Gorai.001G184600 Gossypium raimondii HOM05D000131 ORTHO05D000086 1.9e-07 59.7 86 40.7
Manes.15G048700 Manihot esculenta HOM05D000131 ORTHO05D000086 1.9e-07 59.7 91 42.9
PGSC0003DMG400020156 Solanum tuberosum HOM05D000131 ORTHO05D000086 1.9e-07 59.7 65 50.8
Actinidia35948 Actinidia chinensis HOM05D000131 ORTHO05D000086 2.4e-07 59.3 110 40.9
CARHR101010 Cardamine hirsuta HOM05D000131 ORTHO05D000086 2.4e-07 59.3 93 39.8
FAN17G1606 Fragaria x ananassa HOM05D000131 ORTHO05D000086 2.4e-07 59.3 97 38.1
Gohir.A07G155100 Gossypium hirsutum HOM05D000131 ORTHO05D000086 2.4e-07 59.3 63 49.2
Prupe.8G206800 Prunus persica HOM05D000131 ORTHO05D000086 2.4e-07 59.3 64 53.1
Solyc06g083580.4 Solanum lycopersicum HOM05D000131 ORTHO05D000086 2.4e-07 59.3 93 40.9
SGA_v2.0_scaffold31G12599 Striga asiatica HOM05D000131 ORTHO05D000086 2.4e-07 59.3 68 47.1
CANSAT01G2900 Cannabis sativa HOM05D000131 ORTHO05D000086 3.2e-07 58.9 84 40.5
CiPaw.01G126500 Carya illinoinensis HOM05D000131 ORTHO05D000086 3.2e-07 58.9 55 56.4
Duzib268G1345 Durio zibethinus HOM05D000131 ORTHO05D000086 3.2e-07 58.9 98 44.9
Gohir.D11G142100 Gossypium hirsutum HOM05D000131 ORTHO05D000086 3.2e-07 58.9 84 42.9
Lsat_1_v5_gn_2_43400 Lactuca sativa HOM05D000131 ORTHO05D000086 3.2e-07 58.9 101 38.6
CiPaw.03G152000 Carya illinoinensis HOM05D000131 ORTHO05D000086 4.2e-07 58.5 89 39.3
ECA248G1990 Erigeron canadensis HOM05D000131 ORTHO05D000086 4.2e-07 58.5 89 40.4
Migut.G00620 Erythranthe guttata HOM05D000131 ORTHO05D000086 4.2e-07 58.5 88 46.6
Sopen06g034960 Solanum pennellii HOM05D000131 ORTHO05D000086 4.2e-07 58.5 93 40.9
THA.LOC104808774 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 4.2e-07 58.5 61 52.5
A07p07580 Brassica napus HOM05D000131 ORTHO05D000086 5.5e-07 58.2 69 46.4
BolC7t41612H Brassica oleracea HOM05D000131 ORTHO05D000086 5.5e-07 58.2 66 53.0
BraA07t28550Z Brassica rapa HOM05D000131 ORTHO05D000086 5.5e-07 58.2 69 46.4
FvH4_4g05760 Fragaria vesca HOM05D000131 ORTHO05D000086 5.5e-07 58.2 97 38.1
FAN12G1993 Fragaria x ananassa HOM05D000131 ORTHO05D000086 5.5e-07 58.2 97 38.1
FAN22G1372 Fragaria x ananassa HOM05D000131 ORTHO05D000086 5.5e-07 58.2 97 39.2
Gorai.011G161900 Gossypium raimondii HOM05D000131 ORTHO05D000086 5.5e-07 58.2 93 46.2
Lj6A611G51 Lonicera japonica HOM05D000131 ORTHO05D000086 5.5e-07 58.2 59 55.9
MD13G1231000 Malus domestica HOM05D000131 ORTHO05D000086 5.5e-07 58.2 37 67.6
Aa31LG9G3950 Aethionema arabicum HOM05D000131 ORTHO05D000086 7.1e-07 57.8 95 38.9
Nn1g03134 Nelumbo nucifera HOM05D000131 ORTHO05D000086 7.1e-07 57.8 67 52.2
TWI73G0957 Tripterygium wilfordii HOM05D000131 ORTHO05D000086 7.1e-07 57.8 55 56.4
BcaB06g26685 Brassica carinata HOM05D000131 ORTHO05D000086 9.3e-07 57.4 92 41.3
BcaC06g35745 Brassica carinata HOM05D000131 ORTHO05D000086 9.3e-07 57.4 66 53.0
C07p11340 Brassica napus HOM05D000131 ORTHO05D000086 9.3e-07 57.4 66 53.0
Hma1.2p1_1858F.1_g305600 Hydrangea macrophylla HOM05D000131 ORTHO05D000086 9.3e-07 57.4 87 48.3
Manes.12G042700 Manihot esculenta HOM05D000131 ORTHO05D000086 9.3e-07 57.4 64 50.0
Nitab4.5_0001056g0020 Nicotiana tabacum HOM05D000131 ORTHO05D000086 9.3e-07 57.4 84 45.2
Rhsim09G0049600 Rhododendron simsii HOM05D000131 ORTHO05D000086 9.3e-07 57.4 102 44.1
Cpa.g.sc8.183 Carica papaya HOM05D000131 ORTHO05D000086 1.2e-06 57.0 84 44.0
Sc13g0002760 Simmondsia chinensis HOM05D000131 ORTHO05D000086 1.2e-06 57.0 85 44.7
Solyc09g061890.3 Solanum lycopersicum HOM05D000131 ORTHO05D000086 1.2e-06 57.0 93 41.9
vmacro02741 Vaccinium macrocarpon HOM05D000131 ORTHO05D000086 1.2e-06 57.0 53 58.5
ECA233G2752 Erigeron canadensis HOM05D000131 ORTHO05D000086 1.6e-06 56.6 48 56.2
Potri.014G178100 Populus trichocarpa HOM05D000131 ORTHO05D000086 1.6e-06 56.6 57 54.4
Duzib138G0444 Durio zibethinus HOM05D000131 ORTHO05D000086 2.1e-06 56.2 62 50.0
QL09p044473 Quercus lobata HOM05D000131 ORTHO05D000086 2.1e-06 56.2 85 40.0
Aa31LG8G11840 Aethionema arabicum HOM05D000131 ORTHO05D000086 2.7e-06 55.8 72 41.7
CANSAT78G0518 Cannabis sativa HOM05D000131 ORTHO05D000086 2.7e-06 55.8 55 54.5
CANSAT78G1996 Cannabis sativa HOM05D000131 ORTHO05D000086 2.7e-06 55.8 55 54.5
Dinv38280 Davidia involucrata HOM05D000131 ORTHO05D000086 2.7e-06 55.8 37 73.0
Sopen09g024960 Solanum pennellii HOM05D000131 ORTHO05D000086 2.7e-06 55.8 93 40.9
SGA_v2.0_scaffold2G00830 Striga asiatica HOM05D000131 ORTHO05D000086 2.7e-06 55.8 69 52.2
TWI59G0601 Tripterygium wilfordii HOM05D000131 ORTHO05D000086 2.7e-06 55.8 55 56.4
Ah.02g126760 Amaranthus hybridus HOM05D000131 ORTHO05D000086 3.5e-06 55.5 55 52.7
AUR62035304 Chenopodium quinoa HOM05D000131 ORTHO05D000086 3.5e-06 55.5 57 50.9
CsaV3_2G012050 Cucumis sativus L. HOM05D000131 ORTHO05D000086 3.5e-06 55.5 92 39.1
Eucgr.H00093 Eucalyptus grandis HOM05D000131 ORTHO05D000086 3.5e-06 55.5 83 42.2
HanXRQChr11g0342741 Helianthus annuus HOM05D000131 ORTHO05D000086 3.5e-06 55.5 86 45.3
Ah.03g138720 Amaranthus hybridus HOM05D000131 ORTHO05D000086 4.6e-06 55.1 62 51.6
Haze_11555 Corylus avellana HOM05D000131 ORTHO05D000086 4.6e-06 55.1 54 57.4
HanXRQChr01g0022701 Helianthus annuus HOM05D000131 ORTHO05D000086 4.6e-06 55.1 75 44.0
PGSC0003DMG400015815 Solanum tuberosum HOM05D000131 ORTHO05D000086 4.6e-06 55.1 93 41.9
MELO3C006338.2 Cucumis melo HOM05D000131 ORTHO05D000086 6.0e-06 54.7 56 55.4
Migut.N02255 Erythranthe guttata HOM05D000131 ORTHO05D000086 6.0e-06 54.7 63 50.8
Lalb_Chr03g0036661 Lupinus albus HOM05D000131 ORTHO05D000086 6.0e-06 54.7 65 49.2
PGR083G2536 Punica granatum HOM05D000131 ORTHO05D000086 6.0e-06 54.7 69 46.4
RcHm_v2.0_Chr6g0285301 Rosa chinensis HOM05D000131 ORTHO05D000086 6.0e-06 54.7 96 39.6
ClCG05G003590 Citrullus lanatus HOM05D000131 ORTHO05D000086 7.9e-06 54.3 55 47.3
Ciclev10019202m.g Citrus clementina HOM05D000131 ORTHO05D000086 7.9e-06 54.3 63 47.6
Cc01_g17310 Coffea canephora HOM05D000131 ORTHO05D000086 7.9e-06 54.3 57 54.4
CsaV3_3G011280 Cucumis sativus L. HOM05D000131 ORTHO05D000086 7.9e-06 54.3 56 55.4
HanXRQChr02g0059531 Helianthus annuus HOM05D000131 ORTHO05D000086 7.9e-06 54.3 64 48.4
Lalb_Chr19g0128771 Lupinus albus HOM05D000131 ORTHO05D000086 7.9e-06 54.3 66 51.5
MD05G1179500 Malus domestica HOM05D000131 ORTHO05D000086 7.9e-06 54.3 93 36.6
MD10G1169100 Malus domestica HOM05D000131 ORTHO05D000086 7.9e-06 54.3 93 38.7


User provided reference genes

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