Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g11633 Utricularia gibba HOM05D004130 ORTHO05D004705 6.1e-45 183.7 90 100.0
EL10Ac5g11913 Beta vulgaris HOM05D004130 ORTHO05D004705 4.0e-36 154.5 90 81.1
Glyma.04G122900 Glycine max HOM05D004130 ORTHO05D004705 9.8e-35 149.8 91 78.0
RcHm_v2.0_Chr7g0213621 Rosa chinensis HOM05D004130 ORTHO05D004705 6.4e-34 147.1 91 76.9
ClCG10G000940 Citrullus lanatus HOM05D004130 ORTHO05D004705 8.3e-34 146.7 89 79.8
Glyma.09G214500 Glycine max HOM05D004130 ORTHO05D004705 1.4e-33 146.0 91 75.8
Nn1g02053 Nelumbo nucifera HOM05D004130 ORTHO05D004705 2.4e-33 145.2 91 76.9
Eucgr.E01218 Eucalyptus grandis HOM05D004130 ORTHO05D004705 3.2e-33 144.8 91 75.8
PGR031G3679 Punica granatum HOM05D004130 ORTHO05D004705 3.2e-33 144.8 91 75.8
PGR067G0004 Punica granatum HOM05D004130 ORTHO05D004705 3.2e-33 144.8 91 75.8
Hund11098 Selenicereus undatus HOM05D004130 ORTHO05D004705 3.2e-33 144.8 90 72.2
CSS0014160 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 4.1e-33 144.4 91 76.9
AUR62027316 Chenopodium quinoa HOM05D004130 ORTHO05D004705 4.1e-33 144.4 90 70.0
Prupe.5G019500 Prunus persica HOM05D004130 ORTHO05D004705 5.4e-33 144.1 91 74.7
SalBow8G1427 Salvia bowleyana HOM05D004130 ORTHO05D004705 5.4e-33 144.1 91 76.9
Sc01g0007080 Simmondsia chinensis HOM05D004130 ORTHO05D004705 5.4e-33 144.1 91 72.5
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 5.4e-33 144.1 89 74.2
TAR374G0121 Trochodendron aralioides HOM05D004130 ORTHO05D004705 5.4e-33 144.1 91 76.9
Actinidia14738 Actinidia chinensis HOM05D004130 ORTHO05D004705 7.0e-33 143.7 91 76.9
Cpa.g.c33773 Carica papaya HOM05D004130 ORTHO05D004705 7.0e-33 143.7 91 75.8
Gohir.D11G319700 Gossypium hirsutum HOM05D004130 ORTHO05D004705 2.1e-32 142.1 91 73.6
Lalb_Chr16g0380701 Lupinus albus HOM05D004130 ORTHO05D004705 2.1e-32 142.1 89 76.4
Manes.15G182400 Manihot esculenta HOM05D004130 ORTHO05D004705 2.1e-32 142.1 90 75.6
Phvul.002G127700 Phaseolus vulgaris HOM05D004130 ORTHO05D004705 2.1e-32 142.1 91 74.7
CSS0012724 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 2.7e-32 141.7 91 75.8
CSS0035325 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 2.7e-32 141.7 91 75.8
Migut.E01354 Erythranthe guttata HOM05D004130 ORTHO05D004705 2.7e-32 141.7 86 77.9
QL12p001893 Quercus lobata HOM05D004130 ORTHO05D004705 2.7e-32 141.7 90 75.6
Sed0010064 Sechium edule HOM05D004130 ORTHO05D004705 2.7e-32 141.7 89 77.5
Dinv41817 Davidia involucrata HOM05D004130 ORTHO05D004705 3.5e-32 141.4 91 74.7
ECA246G1091 Erigeron canadensis HOM05D004130 ORTHO05D004705 3.5e-32 141.4 91 74.7
Lsat_1_v5_gn_3_23340 Lactuca sativa HOM05D004130 ORTHO05D004705 3.5e-32 141.4 86 77.9
Lalb_Chr05g0215391 Lupinus albus HOM05D004130 ORTHO05D004705 3.5e-32 141.4 91 73.6
MD00G1002100 Malus domestica HOM05D004130 ORTHO05D004705 3.5e-32 141.4 91 73.6
Oeu046800.1 Olea europaea HOM05D004130 ORTHO05D004705 3.5e-32 141.4 86 77.9
Potri.003G103700 Populus trichocarpa HOM05D004130 ORTHO05D004705 3.5e-32 141.4 91 75.8
Ciclev10002973m.g Citrus clementina HOM05D004130 ORTHO05D004705 4.6e-32 141.0 91 73.6
Peaxi162Scf00193g00214 Petunia axillaris HOM05D004130 ORTHO05D004705 4.6e-32 141.0 91 74.7
Sabra01G0100700 Salix brachista HOM05D004130 ORTHO05D004705 6.0e-32 140.6 91 73.6
Sabra03G0070800 Salix brachista HOM05D004130 ORTHO05D004705 6.0e-32 140.6 91 74.7
PSO063G4979 Papaver somniferum HOM05D004130 ORTHO05D004705 7.8e-32 140.2 90 72.2
PSO782G2341 Papaver somniferum HOM05D004130 ORTHO05D004705 7.8e-32 140.2 90 72.2
Ah.12g056050 Amaranthus hybridus HOM05D004130 ORTHO05D004705 1.0e-31 139.8 87 72.4
Aqoxy4G02079 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 1.0e-31 139.8 91 72.5
Os08g0162800 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 1.0e-31 139.8 90 72.2
Solyc08g075690.3 Solanum lycopersicum HOM05D004130 ORTHO05D004705 1.0e-31 139.8 91 73.6
GSVIVG01022804001 Vitis vinifera HOM05D004130 ORTHO05D004705 1.0e-31 139.8 90 73.3
ATR0829G178 Amborella trichopoda HOM05D004130 ORTHO05D004705 1.3e-31 139.4 91 73.6
Aqoxy7G01323 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 1.3e-31 139.4 91 72.5
COL.COLO4_37232 Corchorus olitorius HOM05D004130 ORTHO05D004705 1.3e-31 139.4 87 78.2
Gorai.007G349800 Gossypium raimondii HOM05D004130 ORTHO05D004705 1.7e-31 139.0 91 72.5
Os03g0576600 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 1.7e-31 139.0 86 76.7
Sopen08g024340 Solanum pennellii HOM05D004130 ORTHO05D004705 1.7e-31 139.0 91 73.6
Actinidia01260 Actinidia chinensis HOM05D004130 ORTHO05D004705 2.3e-31 138.7 91 73.6
AUR62007416 Chenopodium quinoa HOM05D004130 ORTHO05D004705 2.3e-31 138.7 86 69.8
TAR375G1053 Trochodendron aralioides HOM05D004130 ORTHO05D004705 2.3e-31 138.7 90 74.4
FvH4_5g24090 Fragaria vesca HOM05D004130 ORTHO05D004705 3.0e-31 138.3 86 75.6
FAN04G1172 Fragaria x ananassa HOM05D004130 ORTHO05D004705 3.0e-31 138.3 86 75.6
FAN13G0805 Fragaria x ananassa HOM05D004130 ORTHO05D004705 3.0e-31 138.3 86 75.6
FAN18G1566 Fragaria x ananassa HOM05D004130 ORTHO05D004705 3.0e-31 138.3 86 75.6
FAN18G3743 Fragaria x ananassa HOM05D004130 ORTHO05D004705 3.0e-31 138.3 86 75.6
Manes.17G006800 Manihot esculenta HOM05D004130 ORTHO05D004705 3.0e-31 138.3 90 73.3
Dinv37412 Davidia involucrata HOM05D004130 ORTHO05D004705 3.9e-31 137.9 90 73.3
Thecc.03G325000 Theobroma cacao HOM05D004130 ORTHO05D004705 3.9e-31 137.9 89 75.3
PGSC0003DMG400030867 Solanum tuberosum HOM05D004130 ORTHO05D004705 5.1e-31 137.5 91 72.5
Zm00001eb415460 Zea mays HOM05D004130 ORTHO05D004705 5.1e-31 137.5 89 73.0
Gohir.A11G304400 Gossypium hirsutum HOM05D004130 ORTHO05D004705 6.6e-31 137.1 89 70.8
Potri.001G130200 Populus trichocarpa HOM05D004130 ORTHO05D004705 6.6e-31 137.1 91 71.4
CDE11G1231 Ceratophyllum demersum HOM05D004130 ORTHO05D004705 8.6e-31 136.7 86 77.9
Gohir.D11G319800 Gossypium hirsutum HOM05D004130 ORTHO05D004705 8.6e-31 136.7 89 70.8
THA.LOC104798518 Tarenaya hassleriana HOM05D004130 ORTHO05D004705 1.1e-30 136.3 91 71.4
CDE02G3877 Ceratophyllum demersum HOM05D004130 ORTHO05D004705 1.5e-30 136.0 89 73.0
Rhsim11G0034100 Rhododendron simsii HOM05D004130 ORTHO05D004705 1.5e-30 136.0 86 74.4
DCAR_030897 Daucus carota HOM05D004130 ORTHO05D004705 1.9e-30 135.6 86 72.1
THA.LOC104814400 Tarenaya hassleriana HOM05D004130 ORTHO05D004705 1.9e-30 135.6 91 71.4
MELO3C031937.2 Cucumis melo HOM05D004130 ORTHO05D004705 2.5e-30 135.2 89 71.9
Medtr5g026740 Medicago truncatula HOM05D004130 ORTHO05D004705 2.5e-30 135.2 89 69.7
CsaV3_3G001010 Cucumis sativus L. HOM05D004130 ORTHO05D004705 3.3e-30 134.8 89 70.8
Nn3g19256 Nelumbo nucifera HOM05D004130 ORTHO05D004705 3.3e-30 134.8 87 74.7
CAN.G800.12 Capsicum annuum HOM05D004130 ORTHO05D004705 4.3e-30 134.4 88 73.9
Duzib106G0486 Durio zibethinus HOM05D004130 ORTHO05D004705 4.3e-30 134.4 90 70.0
Lj2g0015830 Lotus japonicus HOM05D004130 ORTHO05D004705 4.3e-30 134.4 91 69.2
PGR042G1275 Punica granatum HOM05D004130 ORTHO05D004705 4.3e-30 134.4 91 71.4
TWI36G0806 Tripterygium wilfordii HOM05D004130 ORTHO05D004705 4.3e-30 134.4 90 71.1
DCAR_006311 Daucus carota HOM05D004130 ORTHO05D004705 5.6e-30 134.0 82 78.0
CiPaw.12G072200 Carya illinoinensis HOM05D004130 ORTHO05D004705 7.3e-30 133.7 91 71.4
arahy.Tifrunner.gnm1.ann1.DIJ3RT Arachis hypogaea HOM05D004130 ORTHO05D004705 9.5e-30 133.3 87 71.3
arahy.Tifrunner.gnm1.ann1.X5SRIL Arachis hypogaea HOM05D004130 ORTHO05D004705 9.5e-30 133.3 87 71.3
Nitab4.5_0000030g0220 Nicotiana tabacum HOM05D004130 ORTHO05D004705 9.5e-30 133.3 86 73.3
Os06g0115300 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 9.5e-30 133.3 90 68.9
Psat2g143680 Pisum sativum HOM05D004130 ORTHO05D004705 9.5e-30 133.3 91 69.2
MSTRG.11879 Avicennia marina HOM05D004130 ORTHO05D004705 1.2e-29 132.9 89 70.8
TWI12G1099 Tripterygium wilfordii HOM05D004130 ORTHO05D004705 1.2e-29 132.9 91 70.3
MBI04_g27275_MAGBIO Magnolia biondii HOM05D004130 ORTHO05D004705 2.1e-29 132.1 86 74.4
Nitab4.5_0001023g0180 Nicotiana tabacum HOM05D004130 ORTHO05D004705 2.1e-29 132.1 86 72.1
Aa31LG2G14240 Aethionema arabicum HOM05D004130 ORTHO05D004705 2.8e-29 131.7 91 69.2
Zm00001eb378890 Zea mays HOM05D004130 ORTHO05D004705 2.8e-29 131.7 86 70.9
CiPaw.11G103700 Carya illinoinensis HOM05D004130 ORTHO05D004705 4.7e-29 131.0 91 69.2
Atru.chr6.2108 Acer truncatum HOM05D004130 ORTHO05D004705 1.1e-28 129.8 91 69.2
BcaC05g27197 Brassica carinata HOM05D004130 ORTHO05D004705 1.4e-28 129.4 90 68.9
C05p39640 Brassica napus HOM05D004130 ORTHO05D004705 1.4e-28 129.4 90 68.9
Sp1g27510 Schrenkiella parvula HOM05D004130 ORTHO05D004705 1.4e-28 129.4 85 71.8
Gorai.007G349900 Gossypium raimondii HOM05D004130 ORTHO05D004705 2.3e-28 128.6 85 69.4
vmacro00053 Vaccinium macrocarpon HOM05D004130 ORTHO05D004705 2.3e-28 128.6 85 71.8
Ca_25095_v3 Cicer arietinum L. HOM05D004130 ORTHO05D004705 4.0e-28 127.9 86 69.8
Ca_30395_v3 Cicer arietinum L. HOM05D004130 ORTHO05D004705 4.0e-28 127.9 86 69.8
Carub.0001s3012 Capsella rubella HOM05D004130 ORTHO05D004705 5.2e-28 127.5 86 69.8
BcaB03g13788 Brassica carinata HOM05D004130 ORTHO05D004705 6.8e-28 127.1 90 65.6
BcaB07g32828 Brassica carinata HOM05D004130 ORTHO05D004705 6.8e-28 127.1 90 66.7
CANSAT21G0569 Cannabis sativa HOM05D004130 ORTHO05D004705 8.9e-28 126.7 90 66.7
Psat0s1441g0080 Pisum sativum HOM05D000032 ORTHO05D004705 8.9e-28 126.7 87 69.0
AL1G45890 Arabidopsis lyrata HOM05D004130 ORTHO05D004705 1.2e-27 126.3 91 67.0
TPR.G17251 Trifolium pratense HOM05D004130 ORTHO05D004705 1.2e-27 126.3 87 66.7
Thhalv10009206m.g Eutrema salsugineum HOM05D004130 ORTHO05D004705 1.5e-27 125.9 90 66.7
MD06G1017000 Malus domestica HOM05D004130 ORTHO05D004705 1.5e-27 125.9 91 64.8
Aqoxy4G01989 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 2.0e-27 125.6 92 68.5
AT1G31812 Arabidopsis thaliana HOM05D004130 ORTHO05D004705 4.4e-27 124.4 86 68.6
BraA09t38994Z Brassica rapa HOM05D004130 ORTHO05D004705 7.5e-27 123.6 89 67.4
BolC5t31827H Brassica oleracea HOM05D004130 ORTHO05D004705 9.9e-27 123.2 88 67.0
C05p31030 Brassica napus HOM05D004130 ORTHO05D004705 1.7e-26 122.5 88 65.9
BolC5t32704H Brassica oleracea HOM05D004130 ORTHO05D004705 1.7e-26 122.5 86 67.4
ECA240G1912 Erigeron canadensis HOM05D000302 ORTHO05D000334 1.7e-26 122.5 82 69.5
Hma1.2p1_1873F.1_g306170 Hydrangea macrophylla HOM05D004130 ORTHO05D004705 2.2e-26 122.1 87 66.7
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 2.9e-26 121.7 87 66.7
A05p25500 Brassica napus HOM05D004130 ORTHO05D004705 3.7e-26 121.3 86 66.3
BraA05t21434Z Brassica rapa HOM05D004130 ORTHO05D004705 3.7e-26 121.3 86 66.3
Dinv25573 Davidia involucrata HOM05D004130 ORTHO05D004705 3.7e-26 121.3 86 64.0
HanXRQChr17g0537111 Helianthus annuus HOM05D004130 ORTHO05D004705 4.9e-26 120.9 91 61.5
Cc00_g07460 Coffea canephora HOM05D004130 ORTHO05D004705 6.4e-26 120.6 86 66.3
BolC8t48106H Brassica oleracea HOM05D004130 ORTHO05D004705 1.9e-25 119.0 88 62.5
CARHR031130 Cardamine hirsuta HOM05D004130 ORTHO05D004705 1.9e-25 119.0 90 62.2
Eucgr.C00828 Eucalyptus grandis HOM05D004130 ORTHO05D004705 1.9e-25 119.0 84 64.3
BcaC07g37723 Brassica carinata HOM05D004130 ORTHO05D004705 3.2e-25 118.2 87 63.2
Prupe.7G202100 Prunus persica HOM05D004130 ORTHO05D004705 5.4e-25 117.5 87 60.9
BraA08t33038Z Brassica rapa HOM05D004130 ORTHO05D004705 4.6e-24 114.4 82 64.6
FvH4_1g08340 Fragaria vesca HOM05D004130 ORTHO05D004705 4.6e-24 114.4 84 60.7
FAN19G1377 Fragaria x ananassa HOM05D004130 ORTHO05D004705 4.6e-24 114.4 84 60.7
SEGI_06410 Sequoiadendron giganteum HOM05D004130 ORTHO05D004705 4.6e-24 114.4 78 70.5
FAN28G0738 Fragaria x ananassa HOM05D004130 ORTHO05D004705 6.0e-24 114.0 84 61.9
Thecc.09G080000 Theobroma cacao HOM05D004130 ORTHO05D004705 6.0e-24 114.0 86 61.6
COL.COLO4_18121 Corchorus olitorius HOM05D004130 ORTHO05D004705 7.8e-24 113.6 86 60.5
MD15G1215200 Malus domestica HOM05D004130 ORTHO05D004705 7.8e-24 113.6 89 60.7
FAN23G0613 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.0e-23 113.2 82 62.2
Duzib150G0272 Durio zibethinus HOM05D004130 ORTHO05D004705 1.3e-23 112.8 82 62.2
Gohir.D07G014100 Gossypium hirsutum HOM05D004130 ORTHO05D004705 3.9e-23 111.3 83 60.2
Gorai.001G014900 Gossypium raimondii HOM05D004130 ORTHO05D004705 3.9e-23 111.3 83 60.2
Mapoly0146s0043 Marchantia polymorpha HOM05D004130 ORTHO05D004705 3.9e-23 111.3 85 61.2
Gohir.A07G014450 Gossypium hirsutum HOM05D004130 ORTHO05D004705 1.5e-22 109.4 83 60.2
Rhsim11G0034000 Rhododendron simsii HOM05D004130 ORTHO05D004705 3.3e-22 108.2 87 64.4
AagrBONN_evm.TU.Sc2ySwM_344.2271 Anthoceros agrestis HOM05D004130 ORTHO05D004705 1.6e-21 105.9 85 55.3
BolC5t32707H Brassica oleracea HOM05D004130 ORTHO05D004705 2.1e-21 105.5 81 63.0
FAN26G2855 Fragaria x ananassa HOM05D003252 ORTHO05D003640 2.1e-21 105.5 76 60.5
CBR_g18879 Chara braunii HOM05D004130 ORTHO05D004705 8.1e-21 103.6 81 59.3
Gohir.A11G304300 Gossypium hirsutum HOM05D004130 ORTHO05D004705 1.8e-20 102.4 64 71.9
TAR636G0177 Trochodendron aralioides HOM05D004130 ORTHO05D004705 3.1e-20 101.7 74 63.5
SMO340G0182 Selaginella moellendorffii HOM05D004130 ORTHO05D004705 1.2e-19 99.8 82 58.5
Atru.chr7.1674 Acer truncatum HOM05D004130 ORTHO05D004705 2.6e-19 98.6 82 53.7
Actinidia32778 Actinidia chinensis HOM05D004130 ORTHO05D004705 1.7e-18 95.9 94 59.6
Pp3c14_11470 Physcomitrium patens HOM05D004130 ORTHO05D004705 2.9e-18 95.1 85 55.3
PRCOL_00007032 Prasinoderma coloniale HOM05D004130 ORTHO05D004705 4.9e-18 94.4 85 51.8
GSVIVG01015105001 Vitis vinifera HOM05D004130 ORTHO05D004705 4.9e-18 94.4 60 66.7
Psat2g138640 Pisum sativum HOM05D011477 ORTHO05D004705 2.4e-17 92.0 64 64.1
Haze_08042 Corylus avellana HOM05D004130 ORTHO05D004705 7.1e-17 90.5 91 54.9
Haze_08052 Corylus avellana HOM05D004130 ORTHO05D004705 7.1e-17 90.5 91 54.9
Haze_25978 Corylus avellana HOM05D003252 ORTHO05D003640 7.1e-17 90.5 89 51.7
CSS0007814 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 1.2e-16 89.7 60 73.3
Pp3c2_5450 Physcomitrium patens HOM05D004130 ORTHO05D004705 3.5e-16 88.2 85 50.6
MCO11G819 Micromonas commoda HOM05D004130 ORTHO05D004705 8.7e-15 83.6 78 43.6
Cre02.g118850 Chlamydomonas reinhardtii HOM05D004130 ORTHO05D004705 5.6e-14 80.9 83 49.4
FAN26G3461 Fragaria x ananassa HOM05D003252 ORTHO05D003640 2.0e-11 72.4 75 46.7
Haze_27157 Corylus avellana HOM05D004130 ORTHO05D004705 2.9e-10 68.6 61 47.5
A08p10380 Brassica napus HOM05D004130 ORTHO05D004705 1.9e-09 65.9 43 67.4
A09p34530 Brassica napus HOM05D004130 ORTHO05D004705 2.4e-09 65.5 44 68.2
C05p40370 Brassica napus HOM05D004130 ORTHO05D004705 1.2e-08 63.2 43 67.4
BolC5t32777H Brassica oleracea HOM05D004130 ORTHO05D004705 1.2e-08 63.2 43 67.4
MBI05_g04121_MAGBIO Magnolia biondii HOM05D001811 ORTHO05D001738 1.2e-08 63.2 63 55.6
Haze_27764 Corylus avellana HOM05D004130 ORTHO05D004705 4.6e-08 61.2 61 45.9
MD02G1087600 Malus domestica HOM05D004130 ORTHO05D004705 6.0e-08 60.8 40 62.5
CBR_g39376 Chara braunii HOM05D001964 ORTHO05D001879 2.3e-07 58.9 56 42.9
Zm00001eb172160 Zea mays HOM05D001360 ORTHO05D001231 8.7e-07 57.0 44 63.6
ATR0598G056 Amborella trichopoda HOM05D004130 ORTHO05D004705 1.9e-06 55.8 43 62.8
PSO478G2388 Papaver somniferum HOM05D001964 ORTHO05D001879 3.3e-06 55.1 78 37.2
PSO384G2260 Papaver somniferum HOM05D001964 ORTHO05D001879 7.3e-06 53.9 78 35.9


User provided reference genes

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