Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 2.6e-53 211.8 109 100.0
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 5.5e-24 114.4 104 57.7
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 4.7e-23 111.3 104 51.9
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 2.0e-21 105.9 104 50.0
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 2.6e-21 105.5 106 52.8
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 1.3e-20 103.2 100 54.0
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 1.3e-20 103.2 104 48.1
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 1.3e-20 103.2 104 48.1
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 1.3e-20 103.2 104 48.1
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 1.7e-20 102.8 106 53.8
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 1.7e-20 102.8 102 49.0
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 6.3e-20 100.9 100 49.0
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 6.3e-20 100.9 105 49.5
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 6.3e-20 100.9 106 53.8
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 2.4e-19 99.0 106 47.2
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 2.4e-19 99.0 106 49.1
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 3.1e-19 98.6 100 49.0
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 4.1e-19 98.2 103 50.5
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 4.1e-19 98.2 106 50.9
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 5.4e-19 97.8 105 49.5
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 1.2e-18 96.7 106 50.0
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 1.2e-18 96.7 96 51.0
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 2.0e-18 95.9 97 48.5
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 2.7e-18 95.5 102 48.0
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 2.7e-18 95.5 100 50.0
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 4.5e-18 94.7 105 52.4
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 1.3e-17 93.2 103 48.5
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 1.7e-17 92.8 105 46.7
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 3.8e-17 91.7 102 49.0
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 6.6e-17 90.9 102 49.0
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 8.6e-17 90.5 106 47.2
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 1.5e-16 89.7 106 50.9
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 1.9e-16 89.4 103 47.6
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 1.9e-16 89.4 99 45.5
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 2.5e-16 89.0 108 47.2
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 2.5e-16 89.0 103 48.5
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 2.5e-16 89.0 107 48.6
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 3.3e-16 88.6 102 49.0
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 3.3e-16 88.6 102 48.0
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 9.5e-16 87.0 108 47.2
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 2.1e-15 85.9 96 44.8
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 2.8e-15 85.5 108 46.3
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 2.8e-15 85.5 102 46.1
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 6.1e-15 84.3 96 45.8
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 8.0e-15 84.0 97 46.4
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 1.0e-14 83.6 103 45.6
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 1.0e-14 83.6 103 45.6
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 1.0e-14 83.6 96 45.8
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 1.4e-14 83.2 102 49.0
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 1.4e-14 83.2 95 46.3
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 4.0e-14 81.6 97 46.4
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 5.2e-14 81.3 107 43.9
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 5.2e-14 81.3 102 46.1
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 5.2e-14 81.3 102 46.1
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 5.2e-14 81.3 102 46.1
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 5.2e-14 81.3 102 46.1
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 5.2e-14 81.3 102 46.1
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 8.9e-14 80.5 102 46.1
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 8.9e-14 80.5 90 47.8
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 1.2e-13 80.1 103 44.7
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 2.0e-13 79.3 95 44.2
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 2.0e-13 79.3 103 44.7
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 7.5e-13 77.4 102 47.1
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 9.8e-13 77.0 109 41.3
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 2.2e-12 75.9 102 40.2
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 2.2e-12 75.9 97 42.3
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 2.9e-12 75.5 102 42.2
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 3.7e-12 75.1 95 45.3
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 6.4e-12 74.3 96 37.5
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 8.3e-12 73.9 100 40.0
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 1.1e-11 73.6 105 41.0
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 1.4e-11 73.2 105 41.9
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 1.4e-11 73.2 103 41.7
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 1.9e-11 72.8 102 41.2
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 1.9e-11 72.8 103 40.8
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 1.9e-11 72.8 108 41.7
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 3.2e-11 72.0 103 44.7
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 3.2e-11 72.0 88 47.7
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 1.2e-10 70.1 112 39.3
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.2e-10 70.1 100 36.0
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 6.0e-10 67.8 104 42.3
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 1.7e-09 66.2 98 35.7
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 2.3e-09 65.9 95 41.1
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 3.0e-09 65.5 98 41.8
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 3.0e-09 65.5 104 36.5
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 5.0e-09 64.7 99 42.4
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 6.6e-09 64.3 105 36.2
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 8.6e-09 63.9 98 36.7
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 1.5e-08 63.2 106 40.6
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 8.0e-07 57.4 93 37.6
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 8.0e-07 57.4 85 41.2
Sed0007062 Sechium edule HOM05D007692 ORTHO05D009696 1.8e-06 56.2 51 51.0
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 2.3e-06 55.8 102 32.4
Duzib150G0238 Durio zibethinus HOM05D007692 ORTHO05D009696 4.0e-06 55.1 124 30.6


User provided reference genes

Program Settings