Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 2.7e-129 465.3 228 100.0
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 8.2e-54 214.5 229 55.0
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 9.8e-47 191.0 229 49.8
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 4.7e-41 172.2 230 49.1
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 1.0e-40 171.0 233 46.8
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 1.4e-40 170.6 230 49.1
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 2.3e-40 169.9 230 47.0
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 8.8e-40 167.9 230 47.4
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 1.2e-39 167.5 229 47.2
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 2.6e-39 166.4 230 47.0
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 2.6e-39 166.4 230 49.1
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 1.7e-38 163.7 230 46.5
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 2.2e-38 163.3 229 45.9
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 2.8e-38 162.9 230 44.3
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 4.9e-38 162.2 234 46.2
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 8.3e-38 161.4 206 49.0
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 1.1e-37 161.0 230 46.5
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 4.1e-37 159.1 230 45.7
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 1.6e-36 157.1 230 44.3
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 2.0e-36 156.8 230 44.8
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 2.0e-36 156.8 230 45.2
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 3.5e-36 156.0 230 43.9
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 5.9e-36 155.2 230 44.8
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 5.9e-36 155.2 230 46.5
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 1.3e-35 154.1 205 47.3
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 1.3e-35 154.1 205 46.3
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 1.7e-35 153.7 230 44.8
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 1.7e-35 153.7 206 47.6
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 2.9e-35 152.9 230 45.2
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 5.0e-35 152.1 233 44.2
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 5.0e-35 152.1 230 46.1
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 6.6e-35 151.8 203 47.8
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 8.6e-35 151.4 231 45.0
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 8.6e-35 151.4 231 45.5
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 1.5e-34 150.6 230 43.5
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 2.5e-34 149.8 230 42.6
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 2.5e-34 149.8 204 44.1
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 4.2e-34 149.1 231 46.3
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 4.2e-34 149.1 204 47.1
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 5.5e-34 148.7 230 45.7
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 7.2e-34 148.3 230 44.8
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 9.5e-34 147.9 230 44.3
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 9.5e-34 147.9 230 44.8
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 1.2e-33 147.5 230 44.3
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 1.2e-33 147.5 230 43.9
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 1.2e-33 147.5 230 44.8
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 2.1e-33 146.7 231 45.5
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 2.1e-33 146.7 231 45.0
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 2.8e-33 146.4 231 45.0
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 2.8e-33 146.4 232 44.0
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 2.8e-33 146.4 203 44.3
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 2.8e-33 146.4 230 44.8
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 4.7e-33 145.6 231 43.7
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 8.0e-33 144.8 204 44.6
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 8.0e-33 144.8 230 44.3
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 1.0e-32 144.4 231 43.3
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 1.8e-32 143.7 230 43.9
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 2.3e-32 143.3 230 44.8
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 3.0e-32 142.9 204 44.1
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 4.0e-32 142.5 225 42.2
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 4.0e-32 142.5 234 42.3
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 4.0e-32 142.5 231 41.1
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 5.2e-32 142.1 231 44.6
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 6.8e-32 141.7 231 41.6
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 1.2e-31 141.0 230 43.5
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 1.5e-31 140.6 231 41.1
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 2.0e-31 140.2 203 44.3
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 2.0e-31 140.2 230 43.9
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 4.4e-31 139.0 230 44.3
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 4.4e-31 139.0 223 43.5
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 5.7e-31 138.7 230 41.7
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 7.5e-31 138.3 232 41.8
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 9.8e-31 137.9 221 42.1
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 1.3e-30 137.5 207 44.9
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 1.3e-30 137.5 230 42.2
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 1.7e-30 137.1 232 41.4
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 1.7e-30 137.1 231 41.1
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 1.7e-30 137.1 233 42.5
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 2.9e-30 136.3 230 41.7
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.7e-30 136.0 229 40.2
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 4.9e-30 135.6 232 40.9
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 4.9e-30 135.6 230 40.4
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 6.3e-30 135.2 206 42.7
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 1.4e-29 134.0 230 41.7
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 1.4e-29 134.0 231 42.4
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 1.4e-29 134.0 204 42.6
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 2.4e-29 133.3 209 42.6
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 3.2e-29 132.9 230 40.0
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 4.1e-29 132.5 198 44.4
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 5.4e-29 132.1 210 41.4
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 7.0e-29 131.7 203 42.9
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 1.2e-28 131.0 204 42.2
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.6e-28 130.6 219 42.9
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 4.6e-28 129.0 229 42.4
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 5.9e-28 128.6 231 42.0
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 5.9e-28 128.6 205 42.0
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 1.0e-27 127.9 252 39.7
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 3.9e-27 125.9 230 42.6
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 1.5e-26 124.0 230 41.3
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 1.9e-26 123.6 212 41.0
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 4.3e-26 122.5 205 40.0
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 5.6e-26 122.1 219 37.9
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 5.6e-26 122.1 204 43.1
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 7.3e-26 121.7 216 39.8
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 9.5e-26 121.3 230 40.0
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 9.5e-26 121.3 211 39.3
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 3.6e-25 119.4 229 38.4
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 4.7e-25 119.0 230 41.3
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 4.7e-25 119.0 204 39.7
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 6.1e-25 118.6 203 40.4
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 1.0e-24 117.9 217 37.3
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 2.3e-24 116.7 234 37.2
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 2.3e-24 116.7 231 36.4
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 3.1e-24 116.3 205 42.0
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 4.0e-24 115.9 231 37.7
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 1.2e-23 114.4 231 36.4
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.2e-23 114.4 231 37.2
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 2.0e-23 113.6 227 34.8
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 3.4e-23 112.8 246 40.2
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 9.8e-23 111.3 231 39.0
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 1.7e-22 110.5 218 36.2
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 1.7e-22 110.5 231 39.8
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 1.7e-22 110.5 222 36.0
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 3.7e-22 109.4 236 37.7
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 3.7e-22 109.4 233 36.5
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 4.9e-22 109.0 232 37.5
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 4.9e-22 109.0 205 37.6
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 8.3e-22 108.2 230 34.3
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 1.1e-21 107.8 232 36.6
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.1e-21 107.8 231 34.6
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 1.9e-21 107.1 219 38.8
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 1.9e-21 107.1 209 35.4
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 2.4e-21 106.7 202 37.1
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 9.2e-21 104.8 230 35.7
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 1.6e-20 104.0 229 37.6
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 2.0e-20 103.6 238 37.4
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 2.0e-20 103.6 232 34.5
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 4.6e-20 102.4 230 34.8
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 6.0e-20 102.1 233 35.6
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 7.8e-20 101.7 234 33.8
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 1.0e-19 101.3 231 36.4
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 2.3e-19 100.1 245 34.3
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 5.0e-19 99.0 245 35.5
Lsat_1_v5_gn_6_101640 Lactuca sativa HOM05D003947 ORTHO05D004614 5.0e-19 99.0 229 34.5
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 1.1e-18 97.8 231 35.9
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 1.5e-18 97.4 231 35.1
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 1.5e-18 97.4 231 35.1
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 1.9e-18 97.1 231 35.1
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 3.3e-18 96.3 230 34.3
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 6.2e-17 92.0 192 40.6
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 1.4e-16 90.9 230 34.3
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 1.4e-16 90.9 211 34.1
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 5.2e-16 89.0 228 36.8
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 8.9e-16 88.2 170 39.4
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 8.9e-16 88.2 202 34.7
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 7.5e-15 85.1 190 34.2
SalBow7G0026 Salvia bowleyana HOM05D003947 ORTHO05D004614 7.5e-15 85.1 93 49.5
C05p37750 Brassica napus HOM05D003947 ORTHO05D004614 2.2e-14 83.6 203 32.0
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 1.4e-13 80.9 203 33.0
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 1.0e-11 74.7 245 33.9
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 1.0e-11 74.7 214 34.1
Os05g0591450 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 1.7e-11 73.9 88 45.5
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 2.3e-11 73.6 233 30.9
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 3.0e-11 73.2 226 33.6
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 1.2e-09 67.8 240 30.4
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 2.1e-09 67.0 259 30.1
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 2.8e-09 66.6 186 32.8
Sed0022469 Sechium edule HOM05D003947 ORTHO05D004614 9.9e-07 58.2 168 32.7
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 8.4e-06 55.1 252 31.0


User provided reference genes

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