Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 7.1e-78 293.9 152 100.0
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 2.3e-52 209.1 127 83.5
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 8.8e-52 207.2 139 79.1
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 4.4e-51 204.9 127 81.9
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 1.7e-50 203.0 124 82.3
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 1.1e-49 200.3 128 79.7
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 1.8e-49 199.5 139 74.8
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 2.4e-49 199.1 133 75.9
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 3.1e-49 198.7 128 79.7
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 6.9e-49 197.6 155 69.0
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 9.1e-49 197.2 126 77.0
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 9.1e-49 197.2 126 77.0
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 1.5e-48 196.4 125 77.6
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 2.6e-48 195.7 125 76.8
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 2.6e-48 195.7 124 78.2
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 2.6e-48 195.7 130 77.7
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 3.4e-48 195.3 147 66.7
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 5.9e-48 194.5 125 75.2
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 5.9e-48 194.5 125 77.6
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 7.7e-48 194.1 155 67.7
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 1.0e-47 193.7 126 75.4
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 1.3e-47 193.4 155 67.1
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 1.3e-47 193.4 125 75.2
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 1.3e-47 193.4 125 77.6
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 2.2e-47 192.6 125 78.4
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 2.9e-47 192.2 125 75.2
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 2.9e-47 192.2 124 76.6
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 2.9e-47 192.2 126 77.0
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 3.8e-47 191.8 122 78.7
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 3.8e-47 191.8 125 76.0
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 3.8e-47 191.8 126 74.6
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 5.0e-47 191.4 126 73.0
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 5.0e-47 191.4 124 75.0
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 6.5e-47 191.0 123 74.0
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 6.5e-47 191.0 125 75.2
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 6.5e-47 191.0 127 74.8
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 1.1e-46 190.3 126 74.6
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 1.4e-46 189.9 124 77.4
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 1.9e-46 189.5 128 74.2
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 1.9e-46 189.5 125 76.0
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 1.9e-46 189.5 124 73.4
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.9e-46 189.5 125 75.2
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 1.9e-46 189.5 125 77.6
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 3.2e-46 188.7 128 71.9
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 4.2e-46 188.3 127 74.0
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 4.2e-46 188.3 127 74.0
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 4.2e-46 188.3 124 79.0
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 4.2e-46 188.3 126 77.8
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 5.5e-46 188.0 126 76.2
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 5.5e-46 188.0 125 75.2
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 5.5e-46 188.0 126 74.6
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 9.4e-46 187.2 125 76.0
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 1.2e-45 186.8 124 74.2
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 1.2e-45 186.8 126 74.6
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 1.2e-45 186.8 125 74.4
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 1.2e-45 186.8 124 74.2
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 1.2e-45 186.8 122 76.2
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 1.6e-45 186.4 126 73.8
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 1.6e-45 186.4 124 75.8
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 1.6e-45 186.4 124 75.8
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 2.7e-45 185.7 122 75.4
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 2.7e-45 185.7 120 75.0
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 2.7e-45 185.7 124 72.6
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 4.7e-45 184.9 126 74.6
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 4.7e-45 184.9 123 75.6
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 4.7e-45 184.9 124 74.2
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 6.1e-45 184.5 124 71.0
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 6.1e-45 184.5 126 73.0
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 1.4e-44 183.3 127 70.9
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 1.4e-44 183.3 127 72.4
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 1.8e-44 183.0 123 74.0
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 5.2e-44 181.4 125 73.6
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 2.6e-43 179.1 127 70.1
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 3.3e-43 178.7 139 64.0
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 4.4e-43 178.3 130 68.5
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 5.7e-43 177.9 126 70.6
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 9.7e-43 177.2 124 70.2
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 1.7e-42 176.4 123 71.5
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 3.7e-42 175.3 124 71.8
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 4.8e-42 174.9 124 70.2
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 6.3e-42 174.5 123 69.9
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 4.1e-41 171.8 127 65.4
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 5.3e-41 171.4 125 69.6
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 7.0e-41 171.0 124 67.7
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 7.0e-41 171.0 125 68.0
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 9.1e-41 170.6 125 67.2
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 1.6e-40 169.9 140 65.0
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 1.6e-40 169.9 132 67.4
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 2.6e-40 169.1 118 71.2
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 5.9e-40 167.9 134 67.9
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 5.9e-40 167.9 127 69.3
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 7.7e-40 167.5 129 69.0
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 1.3e-39 166.8 140 64.3
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 3.8e-39 165.2 126 68.3
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 5.0e-39 164.9 125 65.6
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 6.5e-39 164.5 124 66.9
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 6.5e-39 164.5 124 66.9
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 8.5e-39 164.1 118 68.6
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 2.1e-37 159.5 127 65.4
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 3.6e-37 158.7 125 65.6
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 3.6e-37 158.7 125 64.8
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 2.3e-36 156.0 127 63.0
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 4.0e-36 155.2 126 62.7
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 2.6e-35 152.5 131 60.3
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 5.7e-35 151.4 129 62.8
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 9.4e-30 134.0 119 57.1
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 2.3e-28 129.4 126 55.6
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 8.8e-28 127.5 123 52.8
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 2.0e-27 126.3 126 54.8
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 3.4e-27 125.6 77 77.9
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 9.8e-27 124.0 89 68.5
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 7.0e-25 117.9 115 54.8
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 1.2e-24 117.1 131 48.1
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 1.5e-22 110.2 112 53.6
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 2.1e-21 106.3 118 47.5
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 3.0e-20 102.4 125 46.4
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 2.2e-18 96.3 81 55.6
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 8.3e-18 94.4 89 60.7
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 1.8e-17 93.2 102 48.0
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 2.0e-16 89.7 111 45.0
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 5.6e-14 81.6 123 40.7
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 3.0e-12 75.9 115 41.7
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 4.4e-11 72.0 58 69.0
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 1.2e-08 63.9 49 67.3


User provided reference genes

Program Settings