Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 2.4e-69 265.4 133 100.0
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 7.4e-63 243.8 131 91.6
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 3.7e-62 241.5 132 89.4
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 6.3e-62 240.7 131 90.1
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 4.5e-60 234.6 131 88.5
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 6.5e-59 230.7 131 84.7
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 8.5e-59 230.3 131 84.0
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 8.5e-59 230.3 131 84.0
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 9.4e-58 226.9 131 83.2
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 4.6e-57 224.6 174 69.0
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 4.6e-57 224.6 132 83.3
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 6.1e-57 224.2 131 84.0
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 3.9e-56 221.5 132 81.1
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 3.9e-56 221.5 129 81.4
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 5.1e-56 221.1 131 78.6
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 5.1e-56 221.1 129 80.6
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 1.1e-55 219.9 129 82.2
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 1.1e-55 219.9 127 81.9
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.5e-55 219.5 124 83.1
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 2.0e-55 219.2 130 78.5
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 5.7e-55 217.6 124 82.3
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 5.7e-55 217.6 124 83.1
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 5.7e-55 217.6 124 83.1
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 7.4e-55 217.2 131 79.4
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 7.4e-55 217.2 127 81.1
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 9.7e-55 216.9 124 82.3
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.3e-54 216.5 128 79.7
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 1.3e-54 216.5 124 81.5
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 2.2e-54 215.7 127 80.3
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 2.8e-54 215.3 124 83.1
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 2.8e-54 215.3 129 80.6
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 3.7e-54 214.9 129 79.1
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 4.8e-54 214.5 128 79.7
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 4.8e-54 214.5 128 79.7
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 6.3e-54 214.2 124 79.8
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 6.3e-54 214.2 124 82.3
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 8.2e-54 213.8 130 78.5
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 8.2e-54 213.8 124 82.3
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 8.2e-54 213.8 124 81.5
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 8.2e-54 213.8 124 80.6
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.1e-53 213.4 127 78.7
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 1.1e-53 213.4 124 80.6
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.8e-53 212.6 127 78.7
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 1.8e-53 212.6 124 79.8
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 2.4e-53 212.2 129 78.3
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 3.1e-53 211.8 129 79.1
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 4.1e-53 211.5 130 76.9
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 6.9e-53 210.7 124 79.0
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 6.9e-53 210.7 127 78.7
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 9.1e-53 210.3 129 77.5
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 9.1e-53 210.3 129 77.5
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 9.1e-53 210.3 129 77.5
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 9.1e-53 210.3 129 78.3
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 1.2e-52 209.9 124 80.6
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.5e-52 209.5 124 78.2
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 2.0e-52 209.1 126 77.8
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 2.0e-52 209.1 124 78.2
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 2.0e-52 209.1 124 78.2
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 2.6e-52 208.8 124 79.0
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.6e-52 208.8 124 79.0
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 2.6e-52 208.8 124 77.4
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 4.5e-52 208.0 124 77.4
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 4.5e-52 208.0 124 78.2
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 5.9e-52 207.6 118 83.1
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 5.9e-52 207.6 131 75.6
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 5.9e-52 207.6 128 76.6
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 7.7e-52 207.2 118 83.1
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 7.7e-52 207.2 124 78.2
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 7.7e-52 207.2 124 78.2
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 1.3e-51 206.5 124 79.0
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 1.7e-51 206.1 124 77.4
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.7e-51 206.1 124 78.2
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 2.2e-51 205.7 124 76.6
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 2.2e-51 205.7 129 76.7
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 6.5e-51 204.1 130 74.6
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 6.5e-51 204.1 124 77.4
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 6.5e-51 204.1 124 77.4
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 6.5e-51 204.1 124 77.4
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 8.5e-51 203.8 124 76.6
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.1e-50 203.4 125 75.2
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.9e-50 202.6 124 76.6
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.5e-50 202.2 124 77.4
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 2.5e-50 202.2 129 75.2
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 3.2e-50 201.8 129 76.7
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 3.2e-50 201.8 129 76.7
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 4.2e-50 201.4 126 75.4
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 9.4e-50 200.3 124 75.8
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 1.2e-49 199.9 128 75.0
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 1.6e-49 199.5 129 72.9
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.6e-49 199.5 124 75.0
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 6.1e-49 197.6 129 72.9
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 7.9e-49 197.2 126 73.8
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 7.9e-49 197.2 126 73.8
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 1.0e-48 196.8 126 73.0
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 1.0e-48 196.8 126 73.8
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 1.4e-48 196.4 126 73.8
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 1.8e-48 196.1 125 76.0
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 2.3e-48 195.7 126 73.8
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 2.3e-48 195.7 126 73.8
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 2.3e-48 195.7 126 73.8
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 2.3e-48 195.7 127 74.0
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 5.1e-48 194.5 126 73.0
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 5.1e-48 194.5 126 73.0
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 5.1e-48 194.5 126 73.0
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 1.7e-46 189.5 129 72.1
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 2.2e-46 189.1 127 71.7
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 6.3e-46 187.6 124 71.0
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 1.4e-45 186.4 124 69.4
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 9.1e-45 183.7 124 72.6
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 5.9e-44 181.0 109 76.1
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.0e-43 180.3 103 82.5
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 3.8e-43 178.3 125 70.4
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 7.4e-39 164.1 129 65.9
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 9.1e-37 157.1 96 74.0
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 3.8e-35 151.8 111 67.6
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 9.4e-34 147.1 82 80.5
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 1.8e-32 142.9 84 82.1
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 2.6e-31 139.0 82 80.5
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 3.1e-29 132.1 83 77.1
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 5.3e-29 131.3 98 66.3
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 1.7e-27 126.3 79 79.7
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 3.2e-26 122.1 88 63.6
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 4.2e-26 121.7 89 67.4
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.4e-21 106.7 129 48.8
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 1.2e-20 103.6 82 58.5
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 3.8e-19 98.6 61 78.7
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.1e-18 97.1 69 66.7
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.2e-17 93.6 69 65.2
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 8.0e-17 90.9 77 67.5
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 1.0e-16 90.5 99 49.5
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 3.5e-12 75.5 116 44.8
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 3.9e-11 72.0 54 68.5
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 2.8e-09 65.9 36 83.3
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 6.1e-09 64.7 59 47.5
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 1.0e-08 63.9 57 63.2
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 5.8e-07 58.2 40 65.0
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 9.8e-07 57.4 57 57.9
Nitab4.5_0005166g0030 Nicotiana tabacum HOM05D001081 ORTHO05D025899 1.3e-06 57.0 57 56.1
Nitab4.5_0026266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 2.2e-06 56.2 57 57.9


User provided reference genes

Program Settings