Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1863.2 946 100.0
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1372.8 1172 64.6
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1367.4 1169 64.3
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1353.2 1169 63.6
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1352.0 1164 63.6
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1332.4 1158 63.5
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1320.1 1170 62.4
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1312.0 1154 63.6
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1298.9 1170 61.5
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1298.5 1174 61.4
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1296.2 1174 61.3
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1293.5 1176 60.9
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1291.9 1174 61.2
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1290.8 1176 61.1
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1286.6 1173 61.2
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1285.8 1169 61.2
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1285.0 1173 60.7
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1285.0 1172 60.2
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1284.6 1172 60.2
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1284.2 1173 60.8
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1283.9 1173 60.4
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1282.7 1173 60.5
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1277.3 1206 59.6
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1276.5 1187 60.4
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1274.2 1184 60.1
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1272.7 1173 60.1
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1271.9 1173 60.4
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1271.9 1168 60.9
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1269.6 1174 60.4
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1268.4 1174 60.2
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1268.1 1168 60.7
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1268.1 1172 59.6
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1267.7 1174 60.1
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1261.1 1216 59.6
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 1258.4 1170 60.1
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1257.7 1218 58.4
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1256.1 1172 59.9
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1256.1 1220 58.1
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1255.4 1171 59.8
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1255.0 1171 59.6
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1254.6 1169 59.4
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1254.2 1222 58.1
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1253.0 1159 60.1
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1253.0 1222 58.0
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1252.7 1141 60.0
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1252.3 1172 59.7
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1250.7 1167 60.0
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1249.6 1174 59.5
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1249.2 1167 59.8
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1246.5 1167 59.9
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1243.8 1199 58.7
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1241.9 1183 59.2
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1240.3 1159 60.0
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1239.2 1143 60.2
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1236.9 1172 58.9
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1234.9 1178 58.7
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1234.9 1183 58.9
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1234.9 1196 58.5
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1232.6 1213 58.5
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1231.1 1197 58.2
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1230.7 1211 58.2
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1230.7 1173 58.4
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1230.3 1184 58.3
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1228.8 1211 58.2
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1228.8 1172 59.0
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1228.8 1128 59.8
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1225.7 1171 59.0
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1224.2 1226 56.7
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1223.4 1172 58.6
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1221.8 1154 58.8
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1221.5 1175 58.0
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1219.5 1175 58.0
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1218.4 1175 57.7
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1217.2 1170 58.1
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1216.8 1171 59.0
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1216.8 1169 57.8
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1216.8 1139 59.8
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1214.9 1170 59.7
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1214.1 1172 57.5
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 1214.1 1224 55.9
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1214.1 1175 57.2
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1213.0 1165 58.1
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1212.2 1166 58.1
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1211.8 1167 58.3
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1210.7 1181 58.0
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1210.3 1173 58.1
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1209.5 1179 58.6
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1208.7 1168 58.6
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1208.4 1173 57.4
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1207.6 1166 57.8
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1206.8 1174 57.0
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1204.5 1171 57.5
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1204.1 1173 58.3
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1203.7 1173 58.1
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1201.4 1169 58.7
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1199.9 1167 57.1
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1199.5 1204 57.5
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1199.5 1170 57.7
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1197.2 1165 57.5
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1196.8 1166 57.4
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1196.4 1232 55.7
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1194.1 1172 56.6
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1191.4 1172 57.2
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1187.6 1173 56.9
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1185.2 1234 55.5
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1183.3 1159 57.9
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1181.4 1164 56.4
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1180.2 1180 55.7
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1176.8 1234 55.0
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1166.8 1159 56.0
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1162.1 1158 56.0
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1145.2 1206 55.5
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1142.1 1149 56.7
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1141.3 1152 57.3
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1139.0 1095 58.4
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1135.9 1073 59.1
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1135.9 1161 55.6
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1134.8 1161 55.6
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1125.5 1074 59.3
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1122.5 1065 59.2
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 5.6e-282 974.5 948 58.1
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 1.1e-272 943.7 946 56.1
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 1.5e-271 939.9 1078 52.3
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 6.9e-264 914.4 946 55.3
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 2.2e-262 909.4 945 54.5
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 1.8e-256 889.8 1035 53.0
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.2e-252 877.1 544 81.1
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 5.3e-248 861.7 935 54.3
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 6.3e-241 838.2 1050 49.0
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 2.2e-238 829.7 549 75.8
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 5.7e-234 815.1 887 54.0
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 7.2e-229 798.1 1095 44.6
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 4.9e-217 758.8 974 49.0
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 9.5e-213 744.6 1186 39.7
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 1.0e-211 741.1 803 55.8
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 3.1e-211 739.6 978 48.6
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 5.8e-202 708.8 813 53.4
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 2.5e-189 666.8 805 50.3
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.1e-180 637.1 431 74.0
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 7.1e-160 568.9 715 49.1
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 1.7e-153 547.7 360 75.6
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.5e-144 517.3 712 46.6
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 6.1e-127 459.5 307 72.6
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 5.3e-123 446.4 305 71.5
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 4.5e-122 443.4 305 71.1
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 3.4e-117 427.2 721 41.6
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 1.3e-113 415.2 604 46.2
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 2.9e-113 414.1 286 75.5
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 3.4e-109 400.6 296 68.9
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 2.9e-84 317.8 227 67.4
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 4.4e-77 293.9 198 72.2
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 1.7e-76 292.0 416 41.3
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 2.4e-75 288.1 205 70.7
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 5.1e-73 280.4 341 49.0
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 1.3e-68 265.8 182 71.4
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 9.3e-67 259.6 190 68.9
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 1.1e-62 246.1 779 27.7
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 6.9e-62 243.4 143 85.3
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 4.9e-60 237.3 250 54.4
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 1.5e-53 215.7 190 62.1
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 9.6e-48 196.4 133 75.2
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 3.2e-43 181.4 117 77.8
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 2.7e-42 178.3 139 64.7
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 3.3e-40 171.4 111 76.6
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 1.0e-33 149.8 92 82.6
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.4e-25 122.9 78 76.9
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 3.9e-25 121.3 93 68.8
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 3.9e-25 121.3 93 68.8
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 6.7e-25 120.6 93 68.8
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 2.4e-22 112.1 78 73.1
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 3.2e-19 101.7 83 63.9
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 6.7e-17 94.0 107 50.5
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 9.7e-16 90.1 48 79.2
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 3.1e-14 85.1 60 68.3
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 2.4e-06 58.9 83 39.8


User provided reference genes

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