Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 2.0e-92 342.4 170 100.0
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 3.7e-83 311.6 168 89.9
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 1.4e-82 309.7 168 91.1
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 1.2e-81 306.6 168 89.9
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 3.5e-81 305.1 168 89.9
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 3.2e-79 298.5 169 87.6
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 4.2e-79 298.1 168 86.9
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 3.6e-78 295.0 168 86.3
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 2.0e-76 289.3 168 83.3
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 2.6e-76 288.9 168 85.7
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 2.6e-76 288.9 166 86.1
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 9.7e-76 287.0 166 85.5
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 1.3e-75 286.6 168 83.3
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 1.7e-75 286.2 168 82.7
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 2.2e-75 285.8 168 83.3
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 2.2e-75 285.8 168 84.5
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 2.2e-75 285.8 168 83.9
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 2.8e-75 285.4 168 83.3
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 3.7e-75 285.0 168 82.7
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 4.8e-75 284.6 168 83.3
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 4.8e-75 284.6 168 82.7
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 4.8e-75 284.6 166 84.3
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 4.8e-75 284.6 168 83.9
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 4.8e-75 284.6 168 83.9
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 8.2e-75 283.9 168 83.9
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 8.2e-75 283.9 168 83.3
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 1.1e-74 283.5 169 82.8
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 1.4e-74 283.1 168 82.7
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 1.8e-74 282.7 168 82.7
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 2.4e-74 282.3 168 81.5
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 2.4e-74 282.3 166 83.7
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 3.1e-74 282.0 168 83.3
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 3.1e-74 282.0 168 82.1
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 3.1e-74 282.0 168 83.3
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 4.1e-74 281.6 168 82.7
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 5.3e-74 281.2 166 83.1
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 7.0e-74 280.8 168 82.7
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 7.0e-74 280.8 168 81.0
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 9.1e-74 280.4 168 82.7
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 9.1e-74 280.4 168 81.5
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 1.2e-73 280.0 168 82.1
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.2e-73 280.0 168 81.0
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 1.2e-73 280.0 169 81.7
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 1.2e-73 280.0 168 81.5
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.0e-73 279.3 168 79.8
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 2.7e-73 278.9 168 81.5
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 3.5e-73 278.5 168 81.5
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 3.5e-73 278.5 168 81.5
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 3.5e-73 278.5 168 81.0
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 4.5e-73 278.1 168 82.1
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 5.9e-73 277.7 168 80.4
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 5.9e-73 277.7 168 81.5
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 7.7e-73 277.3 168 81.0
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 1.0e-72 276.9 168 81.0
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.0e-72 276.9 168 81.5
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 1.3e-72 276.6 168 81.0
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.3e-72 276.6 168 81.5
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 2.9e-72 275.4 168 78.6
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 2.9e-72 275.4 168 81.0
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 2.9e-72 275.4 168 79.8
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 2.9e-72 275.4 168 79.8
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 3.8e-72 275.0 169 79.3
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 5.0e-72 274.6 168 81.0
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 5.0e-72 274.6 168 79.2
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 6.5e-72 274.2 168 78.0
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 1.1e-71 273.5 168 79.2
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 1.5e-71 273.1 168 78.6
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 1.5e-71 273.1 166 82.5
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 1.9e-71 272.7 167 79.0
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 1.9e-71 272.7 168 81.5
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 1.9e-71 272.7 168 78.6
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 3.2e-71 271.9 168 78.0
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.2e-71 271.9 168 79.2
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 4.2e-71 271.6 168 78.6
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 5.5e-71 271.2 169 78.7
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 9.4e-71 270.4 169 78.1
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 9.4e-71 270.4 168 78.6
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 9.4e-71 270.4 168 79.2
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 9.4e-71 270.4 168 81.0
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 1.2e-70 270.0 166 80.7
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 2.7e-70 268.9 170 77.6
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 3.6e-70 268.5 169 78.1
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 4.7e-70 268.1 169 78.7
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 4.7e-70 268.1 169 78.1
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 6.1e-70 267.7 168 79.2
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 8.0e-70 267.3 169 77.5
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 8.0e-70 267.3 169 77.5
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 1.0e-69 266.9 169 78.1
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 1.0e-69 266.9 169 77.5
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 3.0e-69 265.4 168 79.8
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 4.0e-69 265.0 195 70.8
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 5.2e-69 264.6 168 79.2
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 5.2e-69 264.6 169 78.7
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 8.8e-69 263.8 169 78.7
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 1.2e-68 263.5 169 78.1
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.6e-68 262.3 168 78.6
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 2.6e-68 262.3 167 78.4
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 4.4e-68 261.5 169 78.1
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 5.7e-68 261.2 166 78.9
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 9.8e-68 260.4 161 79.5
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 9.8e-68 260.4 161 79.5
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 9.8e-68 260.4 161 79.5
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 9.8e-68 260.4 169 78.1
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 2.2e-67 259.2 169 77.5
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.2e-67 259.2 168 76.2
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.2e-67 259.2 168 76.2
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 2.8e-67 258.8 170 75.9
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 3.7e-67 258.5 161 77.6
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 6.3e-67 257.7 190 71.1
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 1.1e-66 256.9 169 76.3
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 1.8e-66 256.1 159 80.5
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 2.4e-66 255.8 168 78.0
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 2.4e-66 255.8 169 76.3
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 5.4e-66 254.6 159 79.2
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 5.4e-66 254.6 170 74.7
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 7.0e-66 254.2 162 78.4
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 7.0e-66 254.2 171 75.4
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 7.0e-66 254.2 171 75.4
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 4.5e-65 251.5 168 76.2
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 2.9e-64 248.8 168 75.0
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 1.1e-63 246.9 168 73.8
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 3.2e-63 245.4 168 74.4
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 5.5e-63 244.6 168 74.4
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 1.4e-61 240.0 155 74.2
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 6.8e-61 237.7 148 81.1
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 1.2e-60 236.9 166 72.3
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 3.4e-60 235.3 167 72.5
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 5.7e-60 234.6 150 79.3
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.1e-58 230.3 253 52.6
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 7.0e-58 227.6 159 66.7
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.0e-53 213.8 158 65.2
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 1.4e-53 213.4 162 64.2
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 2.3e-53 212.6 157 65.0
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.0e-48 197.2 168 63.7
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 3.3e-47 192.2 159 60.4
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 1.6e-41 173.3 120 73.3
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 8.6e-40 167.5 171 55.6
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 6.8e-37 157.9 100 81.0
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 7.1e-34 147.9 116 68.1
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 7.8e-33 144.4 102 74.5
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.4e-29 133.7 79 82.3
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 2.4e-26 122.9 163 39.9
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 1.6e-25 120.2 167 38.3
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 9.6e-23 110.9 75 73.3
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 9.6e-23 110.9 75 73.3
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 1.6e-22 110.2 62 88.7
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 1.7e-19 100.1 145 41.4
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.8e-19 99.0 56 82.1
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.2e-18 95.9 55 80.0
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 3.2e-18 95.9 100 53.0
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.7e-17 92.8 54 81.5
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 2.3e-16 89.7 209 36.8
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 6.6e-16 88.2 55 74.5
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 1.1e-15 87.4 165 33.3
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 6.4e-11 71.6 90 45.6
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 2.7e-09 66.2 51 68.6
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 3.5e-09 65.9 45 71.1
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 7.9e-09 64.7 88 45.5
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 1.0e-08 64.3 60 58.3
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 6.7e-08 61.6 38 81.6
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 1.5e-07 60.5 38 73.7
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 1.5e-07 60.5 38 73.7
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 4.3e-07 58.9 64 50.0
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 9.6e-07 57.8 63 52.4
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 9.6e-07 57.8 42 66.7
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 4.8e-06 55.5 50 58.0
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 8.1e-06 54.7 43 65.1


User provided reference genes

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