Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1726.5 867 100.0
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1359.7 863 78.4
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1359.7 863 78.6
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1341.6 861 77.6
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1305.4 867 75.5
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1291.6 867 73.9
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1283.5 866 73.9
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1279.6 866 73.7
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1265.4 871 72.1
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1264.2 871 71.9
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1263.1 871 71.8
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1261.9 868 72.1
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1261.1 868 72.0
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1260.4 889 71.0
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1254.6 868 71.5
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1254.2 873 71.7
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1253.8 867 71.5
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1251.1 869 72.6
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1251.1 865 72.3
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1245.3 867 71.4
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1245.0 867 71.4
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1241.9 866 70.9
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1241.5 875 70.9
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1240.3 869 72.2
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1239.9 867 72.1
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1238.8 873 71.6
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1238.4 865 71.1
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1232.2 867 70.8
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1232.2 867 71.2
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1232.2 870 70.5
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1231.9 866 71.7
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1230.7 868 70.6
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1228.4 950 67.1
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1228.4 950 67.1
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1227.6 869 70.3
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1226.8 838 71.6
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1226.1 865 70.6
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1225.7 868 70.3
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1225.7 871 70.5
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1225.3 868 70.2
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1225.3 866 70.2
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1224.2 868 70.3
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1223.4 868 70.2
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1222.2 868 70.0
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1221.1 869 70.1
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1219.5 951 66.8
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1219.1 868 70.4
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1218.4 867 69.9
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1216.4 867 69.9
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1216.1 868 69.7
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1215.7 867 70.0
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1215.3 863 70.9
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1214.1 881 69.4
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1213.4 863 70.2
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1211.1 881 69.0
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1208.0 872 68.7
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1205.7 867 70.0
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1205.3 866 69.5
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1204.9 881 68.8
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1204.5 864 69.8
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1203.0 863 69.9
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1203.0 867 69.8
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1201.4 864 69.6
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1199.5 904 67.8
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1196.4 863 69.6
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1194.5 863 69.8
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1193.7 868 68.9
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1193.7 868 69.2
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1191.4 868 68.9
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1189.5 864 69.1
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1189.5 848 70.2
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1187.9 868 69.1
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1187.9 870 67.9
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1187.9 868 68.8
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1187.6 864 68.9
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1187.2 864 68.8
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1183.7 866 69.3
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1182.5 866 68.8
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1181.8 868 68.3
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1181.8 864 68.6
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1167.5 866 67.9
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1166.4 865 68.1
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1154.0 860 67.1
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1150.6 1006 61.4
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1143.3 868 66.9
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1139.8 870 65.9
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1138.6 867 66.8
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1123.2 871 65.3
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1112.1 873 63.3
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1107.0 891 64.5
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1104.0 867 63.2
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1082.0 871 63.0
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 3.2e-308 1061.6 866 61.9
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 4.1e-287 991.5 870 59.0
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 1.6e-286 989.6 702 70.9
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 4.5e-278 961.4 709 68.7
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 7.7e-278 960.7 709 68.4
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 1.4e-271 939.9 861 55.6
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 4.4e-265 918.3 726 64.0
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 1.4e-255 886.7 644 69.1
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 3.2e-255 885.6 644 68.6
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 5.4e-255 884.8 662 67.5
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 1.4e-247 860.1 877 52.5
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 1.7e-232 810.1 537 75.8
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 2.5e-228 796.2 545 73.2
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 1.3e-224 783.9 596 67.4
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 7.6e-217 758.1 862 47.8
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 1.9e-215 753.4 862 47.6
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 9.3e-207 724.5 913 45.2
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 5.5e-199 698.7 867 44.6
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 5.1e-181 639.0 838 43.7
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 1.6e-174 617.5 424 71.9
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 5.7e-172 609.0 880 40.5
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 4.0e-133 479.9 308 72.1
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 2.5e-127 460.7 351 65.8
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.9e-119 434.5 385 60.8
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 9.9e-116 422.2 350 59.4
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 1.9e-114 417.9 295 71.2
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 9.3e-106 389.0 329 62.9
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 1.3e-91 342.0 361 51.0
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 3.2e-82 310.8 287 52.3
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 9.0e-77 292.7 297 53.5
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 9.4e-50 203.0 390 35.9
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 2.8e-46 191.4 124 74.2
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 2.7e-44 184.9 116 71.6
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.7e-41 174.9 138 58.0
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 1.2e-39 169.5 725 25.0
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 5.6e-34 150.6 283 35.7
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 4.4e-31 141.0 86 80.2
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 3.7e-14 84.7 61 65.6
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 2.3e-11 75.5 60 70.0
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 2.3e-11 75.5 74 62.2
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 2.3e-11 75.5 74 62.2
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.5e-10 72.8 62 58.1
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 2.5e-10 72.0 45 68.9
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 2.5e-10 72.0 70 54.3
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 5.6e-10 70.9 55 65.5
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 6.8e-08 63.9 38 71.1
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 1.3e-06 59.7 66 47.0
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 2.2e-06 58.9 45 64.4


User provided reference genes

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