Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g10995 Utricularia gibba HOM05D006122 ORTHO05D007426 5.1e-187 657.5 316 100.0
Ciclev10026416m.g Citrus clementina HOM05D006122 ORTHO05D007426 4.7e-108 395.2 224 78.1
Hma1.2p1_0229F.1_g096920 Hydrangea macrophylla HOM05D006122 ORTHO05D007426 8.0e-108 394.4 249 73.5
Cfa003494 Carpinus fangiana HOM05D006122 ORTHO05D007426 1.1e-107 394.0 224 79.5
CSS0025263 Camellia sinensis var. sinensis HOM05D006122 ORTHO05D007426 2.3e-107 392.9 224 79.0
PGR102G1167 Punica granatum HOM05D006122 ORTHO05D007426 5.2e-107 391.7 224 79.0
Dinv37838 Davidia involucrata HOM05D006122 ORTHO05D007426 1.2e-106 390.6 224 78.6
Migut.I01117 Erythranthe guttata HOM05D006122 ORTHO05D007426 1.2e-106 390.6 226 78.3
Actinidia26007 Actinidia chinensis HOM05D006122 ORTHO05D007426 2.6e-106 389.4 224 77.7
CiPaw.02G133000 Carya illinoinensis HOM05D006122 ORTHO05D007426 7.5e-106 387.9 224 77.7
MSTRG.22530 Avicennia marina HOM05D006122 ORTHO05D007426 9.8e-106 387.5 226 77.4
QL05p002004 Quercus lobata HOM05D006122 ORTHO05D007426 1.3e-105 387.1 224 79.9
MD17G1150700 Malus domestica HOM05D006122 ORTHO05D007426 3.7e-105 385.6 227 77.5
Thecc.06G126900 Theobroma cacao HOM05D006122 ORTHO05D007426 4.9e-105 385.2 224 77.2
Duzib235G1006 Durio zibethinus HOM05D006122 ORTHO05D007426 1.4e-104 383.6 224 76.8
COL.COLO4_30828 Corchorus olitorius HOM05D006122 ORTHO05D007426 2.4e-104 382.9 223 76.2
Gorai.009G144400 Gossypium raimondii HOM05D006122 ORTHO05D007426 3.2e-104 382.5 224 75.9
TAR383G0669 Trochodendron aralioides HOM05D006122 ORTHO05D007426 4.1e-104 382.1 224 75.4
Gohir.A05G138000 Gossypium hirsutum HOM05D006122 ORTHO05D007426 7.1e-104 381.3 224 75.4
Prupe.3G035300 Prunus persica HOM05D006122 ORTHO05D007426 9.2e-104 380.9 224 76.8
Eucgr.J02608 Eucalyptus grandis HOM05D006122 ORTHO05D007426 2.7e-103 379.4 224 75.4
MD09G1176300 Malus domestica HOM05D006122 ORTHO05D007426 3.5e-103 379.0 225 76.4
GSVIVG01016699001 Vitis vinifera HOM05D006122 ORTHO05D007426 4.6e-103 378.6 224 75.9
DCAR_022657 Daucus carota HOM05D006122 ORTHO05D007426 7.8e-103 377.9 226 75.2
Gohir.D05G140100 Gossypium hirsutum HOM05D006122 ORTHO05D007426 7.8e-103 377.9 224 75.0
Manes.11G015100 Manihot esculenta HOM05D006122 ORTHO05D007426 1.0e-102 377.5 224 76.3
vmacro22018 Vaccinium macrocarpon HOM05D006122 ORTHO05D007426 1.0e-102 377.5 237 73.0
Hund14473 Selenicereus undatus HOM05D006122 ORTHO05D007426 2.3e-102 376.3 250 70.4
Cc04_g00910 Coffea canephora HOM05D006122 ORTHO05D007426 5.1e-102 375.2 227 74.4
Peaxi162Scf01003g00013 Petunia axillaris HOM05D006122 ORTHO05D007426 5.1e-102 375.2 225 76.0
Glyma.07G043200 Glycine max HOM05D006122 ORTHO05D007426 1.1e-101 374.0 227 74.4
VMungo0331G0398 Vigna mungo HOM05D006122 ORTHO05D007426 1.9e-101 373.2 225 76.4
Lj3g0011237 Lotus japonicus HOM05D006122 ORTHO05D007426 3.3e-101 372.5 225 74.7
Potri.010G076600 Populus trichocarpa HOM05D006122 ORTHO05D007426 3.3e-101 372.5 224 74.6
Sabra10G0032200 Salix brachista HOM05D000989 ORTHO05D001287 3.3e-101 372.5 222 74.8
Glyma.16G011600 Glycine max HOM05D006122 ORTHO05D007426 5.6e-101 371.7 226 74.3
CANSAT56G0704 Cannabis sativa HOM05D006122 ORTHO05D007426 7.3e-101 371.3 224 72.8
Phvul.010G126800 Phaseolus vulgaris HOM05D006122 ORTHO05D007426 7.3e-101 371.3 225 75.1
Aqoxy3G03460 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 9.5e-101 370.9 224 73.2
AUR62018816 Chenopodium quinoa HOM05D006122 ORTHO05D007426 9.5e-101 370.9 233 72.1
Rhsim12G0212300 Rhododendron simsii HOM05D006122 ORTHO05D007426 3.6e-100 369.0 273 64.5
Sed0027026 Sechium edule HOM05D006122 ORTHO05D007426 3.6e-100 369.0 224 73.2
Solyc11g005060.2 Solanum lycopersicum HOM05D006122 ORTHO05D007426 6.2e-100 368.2 225 73.8
RcHm_v2.0_Chr2g0146911 Rosa chinensis HOM05D006122 ORTHO05D007426 8.1e-100 367.9 224 75.0
Lalb_Chr10g0101271 Lupinus albus HOM05D006122 ORTHO05D007426 1.8e-99 366.7 224 74.1
TWI59G0171 Tripterygium wilfordii HOM05D006122 ORTHO05D007426 2.3e-99 366.3 224 73.7
ECA238G0672 Erigeron canadensis HOM05D006122 ORTHO05D007426 3.1e-99 365.9 226 73.0
HanXRQChr09g0277171 Helianthus annuus HOM05D006122 ORTHO05D007426 4.0e-99 365.5 226 73.0
Psat4g219480 Pisum sativum HOM05D006122 ORTHO05D007426 4.0e-99 365.5 225 72.4
CARHR017950 Cardamine hirsuta HOM05D006122 ORTHO05D007426 2.0e-98 363.2 225 74.2
SGA_v2.0_scaffold71G23902 Striga asiatica HOM05D006122 ORTHO05D007426 2.6e-98 362.8 242 69.8
CsaV3_4G002610 Cucumis sativus L. HOM05D006122 ORTHO05D007426 4.4e-98 362.1 224 71.9
AL1G29610 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 5.8e-98 361.7 225 73.8
Medtr8g022330 Medicago truncatula HOM05D006122 ORTHO05D007426 5.8e-98 361.7 225 71.6
Sp5g27490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 9.9e-98 360.9 226 73.0
FvH4_6g35380 Fragaria vesca HOM05D006122 ORTHO05D007426 1.7e-97 360.1 224 73.2
Os01g0727400 Oryza sativa ssp. japonica HOM05D006122 ORTHO05D007426 1.7e-97 360.1 228 69.3
AT1G17350 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 2.2e-97 359.8 225 73.8
Thhalv10008577m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 2.2e-97 359.8 225 72.9
Carub.0001s1711 Capsella rubella HOM05D006122 ORTHO05D007426 2.9e-97 359.4 225 72.9
PSO063G2922 Papaver somniferum HOM05D006122 ORTHO05D007426 3.7e-97 359.0 223 73.5
Sopen11g001060 Solanum pennellii HOM05D006122 ORTHO05D007426 4.9e-97 358.6 239 69.5
Sp1g15490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 6.4e-97 358.2 225 72.4
SpUn0033_0060 Schrenkiella parvula HOM05D006122 ORTHO05D007426 6.4e-97 358.2 225 72.4
PSO832G0128 Papaver somniferum HOM05D006122 ORTHO05D007426 1.1e-96 357.5 225 72.4
CAN.G1227.1 Capsicum annuum HOM05D006122 ORTHO05D007426 1.4e-96 357.1 226 72.6
Ca_23414_v3 Cicer arietinum L. HOM05D006122 ORTHO05D007426 2.4e-96 356.3 214 73.8
AT1G72420 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 3.2e-96 355.9 226 72.1
Nitab4.5_0001168g0090 Nicotiana tabacum HOM05D006122 ORTHO05D007426 3.2e-96 355.9 207 77.3
HPP92_026812 Vanilla planifolia HOM05D006122 ORTHO05D007426 7.1e-96 354.8 224 69.6
EL10Ac5g12242 Beta vulgaris HOM05D006122 ORTHO05D007426 1.2e-95 354.0 224 73.7
Carub.0002s1927 Capsella rubella HOM05D006122 ORTHO05D007426 1.6e-95 353.6 226 71.7
THA.LOC104812266 Tarenaya hassleriana HOM05D006122 ORTHO05D007426 1.6e-95 353.6 226 71.2
arahy.Tifrunner.gnm1.ann1.JC3XNH Arachis hypogaea HOM05D006122 ORTHO05D007426 2.1e-95 353.2 227 70.5
ATR0068G105 Amborella trichopoda HOM05D006122 ORTHO05D007426 6.0e-95 351.7 225 70.2
arahy.Tifrunner.gnm1.ann1.DIA1Z1 Arachis hypogaea HOM05D006122 ORTHO05D007426 6.0e-95 351.7 227 70.0
MELO3C017781.2 Cucumis melo HOM05D006122 ORTHO05D007426 7.8e-95 351.3 207 75.8
Zm00001eb361800 Zea mays HOM05D006122 ORTHO05D007426 2.3e-94 349.7 229 70.3
A06p13310 Brassica napus HOM05D006122 ORTHO05D007426 6.6e-94 348.2 232 69.0
BraA06t24484Z Brassica rapa HOM05D006122 ORTHO05D007426 1.5e-93 347.1 234 68.8
Thhalv10019098m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 1.5e-93 347.1 226 70.8
BcaNung07320 Brassica carinata HOM05D006122 ORTHO05D007426 2.5e-93 346.3 225 71.1
CARHR065320 Cardamine hirsuta HOM05D006122 ORTHO05D007426 5.6e-93 345.1 226 70.4
C05p15780 Brassica napus HOM05D006122 ORTHO05D007426 7.3e-93 344.7 232 69.4
BolC5t30283H Brassica oleracea HOM05D006122 ORTHO05D007426 7.3e-93 344.7 232 69.4
Lj5A31T62 Lonicera japonica HOM05D006122 ORTHO05D007426 4.7e-92 342.0 228 69.3
Ah.07g199940 Amaranthus hybridus HOM05D006122 ORTHO05D007426 1.1e-91 340.9 210 73.3
Lsat_1_v5_gn_8_4120 Lactuca sativa HOM05D006122 ORTHO05D007426 2.0e-90 336.7 227 68.7
HPP92_000787 Vanilla planifolia HOM05D006122 ORTHO05D007426 5.8e-90 335.1 207 71.0
CDE02G1839 Ceratophyllum demersum HOM05D006122 ORTHO05D007426 4.9e-89 332.0 225 68.0
Aa31LG4G2750 Aethionema arabicum HOM05D006122 ORTHO05D007426 1.7e-78 297.0 215 67.0
Oeu000384.1 Olea europaea HOM05D006122 ORTHO05D007426 1.1e-77 294.3 228 62.7
MBI13_g36947_MAGBIO Magnolia biondii HOM05D006122 ORTHO05D007426 4.2e-72 275.8 163 73.6
AUR62007187 Chenopodium quinoa HOM05D006122 ORTHO05D007426 1.2e-71 274.2 213 61.0
Duzib160G0673 Durio zibethinus HOM05D006122 ORTHO05D007426 2.1e-71 273.5 165 73.9
A07p38600 Brassica napus HOM05D006122 ORTHO05D007426 8.7e-70 268.1 243 57.6
C06p46770 Brassica napus HOM05D006122 ORTHO05D007426 8.7e-70 268.1 232 59.1
TPR.G16670 Trifolium pratense HOM05D006122 ORTHO05D007426 3.3e-69 266.2 170 72.4
BolC6t39721H Brassica oleracea HOM05D006122 ORTHO05D007426 3.7e-68 262.7 248 52.8
Sc01g0007910 Simmondsia chinensis HOM05D006122 ORTHO05D007426 1.5e-66 257.3 156 73.1
Aqoxy301s003 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 2.0e-66 256.9 152 75.0
BraA07t31418Z Brassica rapa HOM05D006122 ORTHO05D007426 7.6e-66 255.0 270 51.5
Pp3c3_21840 Physcomitrium patens HOM05D006122 ORTHO05D007426 1.0e-62 244.6 220 50.0
Haze_16093 Corylus avellana HOM05D006122 ORTHO05D007426 1.3e-62 244.2 281 50.2
Haze_16097 Corylus avellana HOM05D006122 ORTHO05D007426 1.3e-62 244.2 281 50.2
AL2G32090 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 2.3e-62 243.4 142 72.5
Nn1g04517 Nelumbo nucifera HOM05D006122 ORTHO05D007426 2.5e-61 240.0 224 54.9
FAN09G0799 Fragaria x ananassa HOM05D006122 ORTHO05D007426 1.1e-59 234.6 155 69.0
Mapoly0158s0026 Marchantia polymorpha HOM05D006122 ORTHO05D007426 2.6e-58 229.9 220 46.4
Cpa.g.sc25.169 Carica papaya HOM05D006122 ORTHO05D007426 2.9e-57 226.5 224 52.2
FAN14G0976 Fragaria x ananassa HOM05D006122 ORTHO05D007426 2.9e-57 226.5 226 52.7
Nn4g23234 Nelumbo nucifera HOM05D006122 ORTHO05D007426 5.5e-56 222.2 134 74.6
BcaB03g14991 Brassica carinata HOM05D006122 ORTHO05D007426 3.9e-54 216.1 143 66.4
SalBow5G3255 Salvia bowleyana HOM05D006122 ORTHO05D007426 6.9e-51 205.3 226 49.6
CBR_g33997 Chara braunii HOM05D006122 ORTHO05D007426 3.4e-50 203.0 221 42.1
SHI23560 Sapria himalayana HOM05D006122 ORTHO05D007426 7.2e-48 195.3 119 71.4
SalBow5G2173 Salvia bowleyana HOM05D006122 ORTHO05D007426 1.8e-46 190.7 153 60.1
SEGI_37442 Sequoiadendron giganteum HOM05D006122 ORTHO05D007426 1.8e-38 164.1 94 75.5
SMO165G0005 Selaginella moellendorffii HOM05D006122 ORTHO05D007426 3.0e-38 163.3 197 39.1
AagrBONN_evm.TU.Sc2ySwM_362.2335 Anthoceros agrestis HOM05D006122 ORTHO05D007426 2.4e-35 153.7 194 39.2
MCO13G567 Micromonas commoda HOM05D006122 ORTHO05D007426 2.6e-26 123.6 275 29.1
TPR.G16651 Trifolium pratense HOM05D006122 ORTHO05D007426 6.1e-23 112.5 68 73.5
Actinidia31156 Actinidia chinensis HOM05D006122 ORTHO05D007426 8.0e-23 112.1 99 57.6
BcaB03g14993 Brassica carinata HOM05D006122 ORTHO05D007426 6.8e-22 109.0 66 74.2
CAN.G526.12 Capsicum annuum HOM05D006122 ORTHO05D007426 3.4e-21 106.7 167 40.1
Nn1g08880 Nelumbo nucifera HOM05D006122 ORTHO05D007426 4.8e-20 102.8 68 67.6
Cre02.g076750 Chlamydomonas reinhardtii HOM05D006122 ORTHO05D007426 1.8e-14 84.3 197 25.4
Actinidia31157 Actinidia chinensis HOM05D006122 ORTHO05D007426 3.1e-11 73.6 37 81.1
PRCOL_00002435 Prasinoderma coloniale HOM05D005310 ORTHO05D006920 5.4e-11 72.8 189 27.5
SMO119G0157 Selaginella moellendorffii HOM05D005310 ORTHO05D006920 5.9e-10 69.3 180 24.4
Gohir.A06G133700 Gossypium hirsutum HOM05D005310 ORTHO05D006920 2.3e-09 67.4 164 26.8
Gohir.D06G138800 Gossypium hirsutum HOM05D005310 ORTHO05D006920 2.3e-09 67.4 164 26.8
Gorai.010G161400 Gossypium raimondii HOM05D005310 ORTHO05D006920 2.3e-09 67.4 164 26.8
SEGI_40960 Sequoiadendron giganteum HOM05D005310 ORTHO05D006920 3.8e-09 66.6 183 25.1
Dinv12753 Davidia involucrata HOM05D005310 ORTHO05D006920 5.0e-09 66.2 165 26.7
ECA248G0338 Erigeron canadensis HOM05D005310 ORTHO05D006920 1.1e-08 65.1 163 27.0
Sc05g0006870 Simmondsia chinensis HOM05D005310 ORTHO05D006920 1.1e-08 65.1 169 26.6
Rhsim02G0147000 Rhododendron simsii HOM05D005310 ORTHO05D006920 1.5e-08 64.7 163 26.4
CsaV3_1G033090 Cucumis sativus L. HOM05D005310 ORTHO05D006920 1.9e-08 64.3 167 26.3
HanXRQChr11g0343901 Helianthus annuus HOM05D005310 ORTHO05D006920 4.2e-08 63.2 176 25.6
ATR0012G016 Amborella trichopoda HOM05D005310 ORTHO05D006920 5.6e-08 62.8 182 24.7
Pp3c26_9450 Physcomitrium patens HOM05D005310 ORTHO05D006920 7.2e-08 62.4 183 25.1
MD00G1009300 Malus domestica HOM05D005310 ORTHO05D006920 1.2e-07 61.6 167 25.1
MD05G1295400 Malus domestica HOM05D005310 ORTHO05D006920 1.2e-07 61.6 167 25.1
Cfa024186 Carpinus fangiana HOM05D006122 ORTHO05D007426 1.6e-07 61.2 227 25.1
GSVIVG01021256001 Vitis vinifera HOM05D005310 ORTHO05D006920 1.6e-07 61.2 189 24.3
Sed0028201 Sechium edule HOM05D005310 ORTHO05D006920 2.1e-07 60.8 168 26.8
MELO3C002677.2 Cucumis melo HOM05D005310 ORTHO05D006920 3.6e-07 60.1 167 26.9
COL.COLO4_31237 Corchorus olitorius HOM05D005310 ORTHO05D006920 4.7e-07 59.7 168 25.6
QL05p049965 Quercus lobata HOM05D005310 ORTHO05D006920 4.7e-07 59.7 159 26.4
Atru.chr10.1571 Acer truncatum HOM05D005310 ORTHO05D006920 6.1e-07 59.3 163 26.4
FAN21G2773 Fragaria x ananassa HOM05D005310 ORTHO05D006920 6.1e-07 59.3 150 26.7
Prupe.4G066900 Prunus persica HOM05D005310 ORTHO05D006920 6.1e-07 59.3 152 25.0
Nn3g21104 Nelumbo nucifera HOM05D005310 ORTHO05D006920 8.0e-07 58.9 165 25.5
CSS0016268 Camellia sinensis var. sinensis HOM05D005310 ORTHO05D006920 1.0e-06 58.5 189 24.9
FvH4_3g07310 Fragaria vesca HOM05D005310 ORTHO05D006920 1.0e-06 58.5 152 25.7
Hma1.2p1_2416F.1_g321740 Hydrangea macrophylla HOM05D005310 ORTHO05D006920 1.0e-06 58.5 164 23.8
Os02g0234500 Oryza sativa ssp. japonica HOM05D005310 ORTHO05D006920 1.0e-06 58.5 152 25.7
Potri.004G061200 Populus trichocarpa HOM05D005310 ORTHO05D006920 1.0e-06 58.5 152 25.7
RcHm_v2.0_Chr5g0011651 Rosa chinensis HOM05D005310 ORTHO05D006920 1.0e-06 58.5 150 26.0
Zm00001eb204900 Zea mays HOM05D005310 ORTHO05D006920 1.0e-06 58.5 162 27.2
ClCG03G007450 Citrullus lanatus HOM05D005310 ORTHO05D006920 1.4e-06 58.2 170 25.9
FAN16G3592 Fragaria x ananassa HOM05D005310 ORTHO05D006920 1.4e-06 58.2 150 26.0
Lj1A1175T55 Lonicera japonica HOM05D005310 ORTHO05D006920 1.4e-06 58.2 169 27.2
Solyc02g072160.4 Solanum lycopersicum HOM05D005310 ORTHO05D006920 1.8e-06 57.8 190 25.3
PGSC0003DMG400028420 Solanum tuberosum HOM05D005310 ORTHO05D006920 1.8e-06 57.8 153 25.5
Actinidia02744 Actinidia chinensis HOM05D005310 ORTHO05D006920 2.3e-06 57.4 180 23.9
BolC1t01261H Brassica oleracea HOM05D005310 ORTHO05D006920 3.0e-06 57.0 153 24.2
CAN.G411.52 Capsicum annuum HOM05D005310 ORTHO05D006920 3.0e-06 57.0 168 25.0
CiPaw.09G137200 Carya illinoinensis HOM05D005310 ORTHO05D006920 3.0e-06 57.0 189 24.3
A01p10840 Brassica napus HOM05D005310 ORTHO05D006920 4.0e-06 56.6 153 24.2
C01p12850 Brassica napus HOM05D005310 ORTHO05D006920 4.0e-06 56.6 153 24.2
BraA01t01031Z Brassica rapa HOM05D005310 ORTHO05D006920 4.0e-06 56.6 153 24.2
FAN11G0629 Fragaria x ananassa HOM05D005310 ORTHO05D006920 5.2e-06 56.2 152 25.0
PGR042G1369 Punica granatum HOM05D005310 ORTHO05D006920 5.2e-06 56.2 152 25.0
Sopen02g021140 Solanum pennellii HOM05D005310 ORTHO05D006920 5.2e-06 56.2 153 25.5
THA.LOC104806167 Tarenaya hassleriana HOM05D005310 ORTHO05D006920 5.2e-06 56.2 152 26.3
Hma1.2p1_2416F.1_g321730 Hydrangea macrophylla HOM05D005310 ORTHO05D006920 6.8e-06 55.8 160 23.8
Thecc.06G165700 Theobroma cacao HOM05D005310 ORTHO05D006920 6.8e-06 55.8 168 23.8
Nitab4.5_0005937g0010 Nicotiana tabacum HOM05D005310 ORTHO05D006920 8.9e-06 55.5 184 25.0
SGA_v2.0_scaffold16G07714 Striga asiatica HOM05D005310 ORTHO05D006920 8.9e-06 55.5 167 25.7


User provided reference genes

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