Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 1.1e-256 889.4 440 100.0
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 1.1e-150 537.3 390 68.2
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 6.9e-150 534.6 447 61.5
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 1.2e-149 533.9 414 64.0
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 1.4e-147 526.9 406 64.0
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 3.5e-141 505.8 398 63.1
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 2.2e-140 503.1 414 59.4
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 1.9e-139 500.0 326 73.0
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 3.2e-139 499.2 412 61.4
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 4.2e-139 498.8 413 59.6
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 1.2e-138 497.3 376 64.4
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 1.6e-138 496.9 407 60.0
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 2.7e-138 496.1 407 60.2
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 4.7e-138 495.4 413 59.3
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 6.1e-138 495.0 365 64.1
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 1.8e-137 493.4 358 65.9
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 3.0e-137 492.7 409 58.7
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 3.9e-137 492.3 435 57.0
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 5.2e-137 491.9 402 58.7
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 1.1e-136 490.7 402 58.5
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 1.5e-136 490.3 420 58.1
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 1.5e-136 490.3 402 60.7
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 1.5e-136 490.3 319 71.2
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 4.4e-136 488.8 374 62.0
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 5.7e-136 488.4 394 60.7
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 7.4e-136 488.0 393 61.1
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 9.7e-136 487.6 319 71.8
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 2.2e-135 486.5 416 58.4
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 2.8e-135 486.1 356 64.0
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 3.7e-135 485.7 405 60.0
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 4.8e-135 485.3 393 59.0
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 8.2e-135 484.6 351 67.0
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 1.1e-134 484.2 373 61.4
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.1e-134 484.2 373 61.4
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.4e-134 483.8 400 59.0
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 1.4e-134 483.8 404 58.9
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 3.1e-134 482.6 318 70.1
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 7.0e-134 481.5 377 62.9
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 9.1e-134 481.1 330 68.5
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 1.2e-133 480.7 407 59.0
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.6e-133 480.3 366 64.5
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 2.0e-133 479.9 407 58.2
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 2.6e-133 479.6 409 57.2
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 3.5e-133 479.2 356 62.9
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 3.5e-133 479.2 405 58.3
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 3.5e-133 479.2 356 62.9
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 3.5e-133 479.2 351 66.4
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 4.5e-133 478.8 403 58.3
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 5.9e-133 478.4 407 58.5
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 5.9e-133 478.4 359 61.8
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 1.7e-132 476.9 361 61.8
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 1.7e-132 476.9 409 59.7
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 3.8e-132 475.7 319 68.0
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 3.8e-132 475.7 330 66.4
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 8.5e-132 474.6 367 61.0
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 8.5e-132 474.6 389 58.9
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 1.1e-131 474.2 319 68.0
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 1.1e-131 474.2 319 68.0
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.1e-131 474.2 343 67.6
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.5e-131 473.8 310 71.9
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 2.5e-131 473.0 394 60.2
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 3.2e-131 472.6 318 68.9
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 3.2e-131 472.6 317 67.5
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 4.2e-131 472.2 318 67.9
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 5.5e-131 471.9 401 57.4
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 9.4e-131 471.1 319 68.3
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.6e-130 470.3 310 71.9
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 1.6e-130 470.3 310 70.6
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 6.1e-130 468.4 343 63.6
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 8.0e-130 468.0 396 57.3
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 1.0e-129 467.6 311 69.5
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 1.4e-129 467.2 402 56.2
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 1.8e-129 466.8 405 58.5
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 2.3e-129 466.5 409 56.0
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 4.0e-129 465.7 411 55.7
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 4.0e-129 465.7 319 67.4
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 6.8e-129 464.9 367 59.4
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 8.8e-129 464.5 338 64.8
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 4.4e-128 462.2 318 67.9
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 7.5e-128 461.5 338 64.5
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 7.5e-128 461.5 402 57.5
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 1.7e-127 460.3 403 55.8
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 1.7e-127 460.3 403 55.8
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 3.7e-127 459.1 319 67.7
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 3.7e-127 459.1 319 67.1
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 4.8e-127 458.8 392 57.7
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 6.3e-127 458.4 339 64.3
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 6.3e-127 458.4 407 55.8
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 1.4e-126 457.2 319 65.8
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 2.4e-126 456.4 326 66.0
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 3.1e-126 456.1 319 65.2
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 4.1e-126 455.7 457 52.3
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 3.5e-125 452.6 442 53.2
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 1.0e-124 451.1 312 63.8
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 2.2e-124 449.9 288 72.9
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 1.1e-123 447.6 339 63.1
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 1.9e-123 446.8 341 62.8
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 1.9e-123 446.8 341 62.8
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 2.5e-123 446.4 319 64.9
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 7.2e-123 444.9 393 56.2
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 7.2e-123 444.9 378 61.1
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 8.0e-122 441.4 341 62.5
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 8.0e-122 441.4 530 46.4
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 1.4e-121 440.7 309 67.3
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 3.0e-121 439.5 336 61.3
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 4.0e-121 439.1 343 63.8
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 2.0e-120 436.8 442 51.4
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 4.4e-120 435.6 343 63.6
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.1e-118 431.0 274 72.6
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 2.0e-117 426.8 287 70.0
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 1.3e-116 424.1 328 64.0
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 1.7e-116 423.7 331 61.0
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 2.8e-114 416.4 265 70.9
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 8.0e-114 414.8 400 52.0
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 8.0e-114 414.8 319 59.9
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 8.0e-114 414.8 365 58.1
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 2.3e-113 413.3 299 66.2
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 4.0e-113 412.5 368 57.3
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 1.1e-110 404.4 375 51.5
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 2.4e-110 403.3 358 56.7
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 3.5e-109 399.4 304 60.2
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 2.8e-106 389.8 282 66.3
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 6.1e-106 388.7 338 55.3
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 7.0e-102 375.2 316 53.8
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 2.0e-101 373.6 328 59.5
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 2.6e-96 356.7 318 56.9
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 2.9e-95 353.2 338 51.8
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 2.9e-95 353.2 221 73.8
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 4.9e-95 352.4 320 53.1
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 1.1e-94 351.3 368 49.2
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.5e-91 340.9 252 63.9
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 9.2e-86 321.6 206 70.9
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 9.2e-86 321.6 203 73.4
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 1.3e-76 291.2 210 66.7
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 9.3e-70 268.5 338 41.1
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 3.8e-63 246.5 177 67.8
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 5.1e-60 236.1 349 39.3
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 1.8e-57 227.6 234 48.7
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 7.9e-45 185.7 187 50.3
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 2.5e-35 154.1 104 70.2
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 5.0e-31 139.8 85 77.6
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.1e-30 138.7 93 67.7
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 2.2e-23 114.4 77 67.5
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 2.2e-15 87.8 108 46.3
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 5.0e-15 86.7 113 42.5
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 7.2e-14 82.8 93 44.1
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.7e-13 80.9 56 67.9
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.7e-13 80.9 56 67.9
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.7e-13 80.9 56 67.9
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 8.0e-13 79.3 56 66.1
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 3.0e-12 77.4 55 65.5
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 5.7e-11 73.2 53 66.0
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 1.3e-10 72.0 47 76.6
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.2e-08 65.5 44 63.6
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 1.5e-06 58.5 32 68.8
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 4.2e-06 57.0 59 52.5


User provided reference genes

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