Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 5.2e-276 953.7 478 100.0
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 1.2e-187 660.2 445 71.2
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 1.2e-184 650.2 446 71.3
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 4.7e-184 648.3 458 70.1
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 4.4e-182 641.7 478 67.2
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 3.1e-180 635.6 444 69.6
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 2.7e-176 622.5 463 66.1
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 6.1e-176 621.3 463 66.1
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 4.4e-174 615.1 453 66.2
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 9.8e-174 614.0 479 63.0
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 9.8e-174 614.0 458 65.3
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 1.3e-173 613.6 461 64.9
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 1.7e-173 613.2 459 65.6
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 1.1e-172 610.5 458 65.9
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.1e-172 609.0 453 65.3
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 7.0e-172 607.8 469 62.5
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 9.1e-172 607.4 455 65.1
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 2.0e-171 606.3 487 62.6
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 2.0e-171 606.3 459 64.5
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 4.5e-171 605.1 478 63.8
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 4.5e-171 605.1 461 65.1
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 5.9e-171 604.7 479 61.8
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 5.9e-171 604.7 460 64.6
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 5.9e-171 604.7 461 65.1
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 1.0e-170 604.0 452 64.6
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 1.3e-170 603.6 453 65.6
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 1.7e-170 603.2 460 63.7
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 5.0e-170 601.7 474 62.7
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 5.0e-170 601.7 457 64.1
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 5.0e-170 601.7 469 62.3
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 6.6e-170 601.3 460 63.3
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 1.1e-169 600.5 477 62.3
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.5e-169 600.1 469 64.2
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.5e-169 599.4 460 63.3
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 2.5e-169 599.4 460 63.9
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 3.3e-169 599.0 476 61.3
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 3.3e-169 599.0 454 64.3
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 5.6e-169 598.2 476 61.6
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 5.6e-169 598.2 476 61.6
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 5.6e-169 598.2 469 61.8
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 7.2e-169 597.8 456 64.0
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 9.5e-169 597.4 455 64.2
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 2.1e-168 596.3 464 63.1
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 2.1e-168 596.3 448 65.8
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 2.8e-168 595.9 457 63.7
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 3.6e-168 595.5 462 62.6
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 3.6e-168 595.5 465 64.3
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 3.6e-168 595.5 459 64.3
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 6.1e-168 594.7 461 63.6
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 1.4e-167 593.6 477 61.6
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 2.3e-167 592.8 459 63.2
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 2.3e-167 592.8 458 63.3
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 8.9e-167 590.9 456 62.7
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.2e-166 590.5 454 64.5
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 2.0e-166 589.7 472 61.7
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 3.4e-166 589.0 475 61.3
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 4.4e-166 588.6 458 63.3
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 7.5e-166 587.8 457 63.0
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 2.2e-165 586.3 456 63.2
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 2.9e-165 585.9 457 63.0
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 4.9e-165 585.1 458 64.0
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 4.9e-165 585.1 453 63.1
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 4.9e-165 585.1 516 56.8
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 6.4e-165 584.7 457 62.6
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.1e-164 583.9 457 62.6
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.8e-164 583.2 443 65.0
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.8e-164 583.2 443 65.0
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 4.1e-164 582.0 468 60.9
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 1.6e-163 580.1 469 62.9
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 2.7e-163 579.3 478 59.4
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 2.7e-163 579.3 478 59.4
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 2.7e-163 579.3 483 59.6
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 3.5e-163 578.9 478 59.6
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 5.9e-163 578.2 478 59.4
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 5.9e-163 578.2 478 59.4
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 5.9e-163 578.2 478 59.4
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 1.0e-162 577.4 469 59.9
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 2.3e-162 576.2 471 59.9
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 3.0e-162 575.9 460 61.7
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 8.6e-162 574.3 460 61.7
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 1.9e-161 573.2 459 61.0
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 1.8e-159 566.6 446 61.4
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 1.5e-158 563.5 462 58.7
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 2.0e-158 563.1 464 58.6
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 3.4e-158 562.4 429 63.9
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 9.8e-158 560.8 436 62.4
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 1.9e-156 556.6 438 62.8
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 3.2e-156 555.8 462 60.0
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 1.6e-155 553.5 445 61.6
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 2.3e-154 549.7 461 59.4
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 1.5e-153 547.0 528 54.0
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 4.3e-153 545.4 432 63.0
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 4.3e-153 545.4 498 57.4
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 5.6e-153 545.0 448 60.3
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 9.5e-153 544.3 471 57.5
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 4.7e-152 542.0 448 59.8
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 4.7e-152 542.0 466 59.2
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 1.4e-151 540.4 443 60.7
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 6.8e-151 538.1 473 58.1
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.1e-147 526.6 437 60.0
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 6.0e-147 525.0 543 51.2
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 4.0e-143 512.3 487 54.8
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 5.6e-137 491.9 450 56.7
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 1.2e-131 474.2 471 51.0
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 2.4e-127 459.9 370 61.6
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 3.4e-126 456.1 356 62.4
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 1.3e-125 454.1 470 50.4
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-124 451.1 414 56.8
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 9.6e-121 438.0 434 53.5
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 2.4e-116 423.3 342 60.8
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 3.5e-115 419.5 384 57.0
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 6.9e-111 405.2 462 47.4
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 1.9e-108 397.1 477 44.7
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 4.2e-108 396.0 430 48.1
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 2.0e-94 350.5 310 57.7
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 2.2e-93 347.1 390 50.0
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.8e-93 346.3 499 41.1
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.4e-92 344.4 286 59.1
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 3.9e-82 309.7 325 51.7
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 8.5e-77 292.0 460 38.9
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 9.7e-73 278.5 389 43.4
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 1.2e-65 255.0 463 34.8
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 1.6e-62 244.6 448 37.3
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 2.2e-61 240.7 365 38.4
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 3.6e-51 206.8 477 32.3
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 6.1e-51 206.1 192 54.2
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 2.3e-50 204.1 178 55.6
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 6.4e-48 196.1 158 62.7
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 1.1e-39 168.7 210 44.8
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 3.4e-33 147.1 245 38.8
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.7e-30 137.5 99 66.7
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 8.6e-29 132.5 92 70.7
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 3.8e-24 117.1 334 25.7
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 6.9e-18 96.3 85 58.8
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 7.3e-12 76.3 49 71.4
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.6e-11 75.1 71 52.1
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.8e-10 71.6 60 55.0
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 4.0e-10 70.5 44 70.5
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 4.9e-08 63.5 66 56.1
Nitab4.5_0000925g0140 Nicotiana tabacum HOM05D000686 ORTHO05D000512 8.4e-08 62.8 402 24.4
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 2.1e-06 58.2 112 37.5
Sc01g0008120 Simmondsia chinensis HOM05D000686 ORTHO05D000512 7.9e-06 56.2 411 21.7


User provided reference genes

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