Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 8.0e-61 236.9 118 100.0
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 5.2e-44 181.0 121 80.2
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 1.4e-41 172.9 127 73.2
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 1.9e-41 172.6 124 74.2
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 2.4e-41 172.2 118 78.0
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 5.4e-41 171.0 127 71.7
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 9.2e-41 170.2 127 70.1
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 1.2e-40 169.9 128 69.5
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 1.6e-40 169.5 127 70.9
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 1.6e-40 169.5 127 70.9
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 2.1e-40 169.1 128 73.4
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 3.5e-40 168.3 128 70.3
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 4.6e-40 167.9 123 73.2
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 1.3e-39 166.4 122 70.5
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 1.3e-39 166.4 122 70.5
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 2.3e-39 165.6 122 72.1
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 2.3e-39 165.6 123 71.5
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 8.6e-39 163.7 130 68.5
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.1e-38 163.3 127 70.9
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.1e-38 163.3 127 70.9
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 1.9e-38 162.5 127 70.1
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 1.9e-38 162.5 127 70.1
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 1.9e-38 162.5 129 69.8
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 1.9e-38 162.5 119 72.3
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 2.5e-38 162.2 127 71.7
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 2.5e-38 162.2 125 70.4
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 2.5e-38 162.2 123 71.5
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 2.5e-38 162.2 123 71.5
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 2.5e-38 162.2 130 68.5
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 2.5e-38 162.2 125 69.6
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 4.3e-38 161.4 125 72.0
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 4.3e-38 161.4 123 71.5
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 5.6e-38 161.0 115 72.2
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 5.6e-38 161.0 103 79.6
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 5.6e-38 161.0 115 73.0
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 5.6e-38 161.0 122 68.9
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 5.6e-38 161.0 130 67.7
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 7.3e-38 160.6 124 69.4
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 7.3e-38 160.6 130 69.2
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 7.3e-38 160.6 129 65.9
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 1.2e-37 159.8 115 73.9
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.2e-37 159.8 122 70.5
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.2e-37 159.8 122 70.5
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 1.6e-37 159.5 115 74.8
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.6e-37 159.5 131 67.2
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 1.6e-37 159.5 125 70.4
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 1.6e-37 159.5 125 70.4
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 2.1e-37 159.1 113 74.3
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 2.1e-37 159.1 115 73.0
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 2.8e-37 158.7 122 69.7
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 3.6e-37 158.3 107 75.7
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 3.6e-37 158.3 117 71.8
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 3.6e-37 158.3 124 69.4
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 3.6e-37 158.3 117 73.5
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 3.6e-37 158.3 126 69.0
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 4.7e-37 157.9 115 73.0
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 4.7e-37 157.9 130 65.4
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 6.2e-37 157.5 119 68.1
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 6.2e-37 157.5 130 65.4
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 6.2e-37 157.5 115 73.9
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 6.2e-37 157.5 130 66.9
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 8.1e-37 157.1 116 72.4
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 8.1e-37 157.1 116 72.4
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 8.1e-37 157.1 118 68.6
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 8.1e-37 157.1 115 72.2
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 8.1e-37 157.1 111 74.8
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 8.1e-37 157.1 103 81.6
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 1.1e-36 156.8 116 72.4
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 1.1e-36 156.8 116 72.4
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.1e-36 156.8 115 72.2
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.4e-36 156.4 128 65.6
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.4e-36 156.4 126 67.5
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 1.4e-36 156.4 130 66.2
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 1.4e-36 156.4 118 67.8
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 1.8e-36 156.0 115 73.0
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 1.8e-36 156.0 115 72.2
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 1.8e-36 156.0 130 65.4
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.8e-36 156.0 130 65.4
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.8e-36 156.0 123 69.9
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.8e-36 156.0 123 69.9
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 1.8e-36 156.0 120 69.2
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 2.3e-36 155.6 103 77.7
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 2.3e-36 155.6 130 65.4
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 2.3e-36 155.6 118 67.8
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 3.1e-36 155.2 115 70.4
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 4.0e-36 154.8 113 73.5
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 4.0e-36 154.8 130 66.2
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 4.0e-36 154.8 115 73.0
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 4.0e-36 154.8 117 70.9
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 4.0e-36 154.8 130 65.4
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 4.0e-36 154.8 135 66.7
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.2e-36 154.5 123 69.1
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 6.8e-36 154.1 130 65.4
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 6.8e-36 154.1 134 64.9
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.8e-36 154.1 115 68.7
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 6.8e-36 154.1 118 67.8
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 6.8e-36 154.1 115 71.3
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 8.9e-36 153.7 115 72.2
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 8.9e-36 153.7 117 70.1
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 1.2e-35 153.3 122 68.0
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 1.5e-35 152.9 115 71.3
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.5e-35 152.9 132 66.7
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 2.0e-35 152.5 95 78.9
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 2.6e-35 152.1 115 71.3
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 2.6e-35 152.1 115 71.3
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 2.6e-35 152.1 115 71.3
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 2.6e-35 152.1 83 89.2
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 2.6e-35 152.1 130 65.4
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 2.6e-35 152.1 130 65.4
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 3.4e-35 151.8 116 67.2
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 3.4e-35 151.8 115 67.8
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 5.8e-35 151.0 130 65.4
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 5.8e-35 151.0 121 68.6
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 7.6e-35 150.6 111 68.5
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 9.9e-35 150.2 122 67.2
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 9.9e-35 150.2 83 86.7
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 1.3e-34 149.8 93 81.7
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.3e-34 149.8 115 69.6
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 1.7e-34 149.4 85 85.9
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.9e-34 148.7 83 85.5
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 6.4e-34 147.5 95 76.8
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.1e-33 146.7 116 69.8
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 1.1e-33 146.7 103 72.8
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 1.9e-33 146.0 112 71.4
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.4e-33 145.6 128 64.1
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 5.4e-33 144.4 114 67.5
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 2.3e-31 139.0 83 81.9
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 3.0e-31 138.7 125 62.4
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 6.6e-31 137.5 123 65.0
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 1.9e-30 136.0 83 81.9
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 4.3e-30 134.8 119 61.3
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 8.1e-29 130.6 75 85.3
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 2.4e-28 129.0 83 79.5
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.1e-28 128.6 125 59.2
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 8.9e-28 127.1 83 77.1
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 5.8e-27 124.4 120 65.0
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.7e-26 122.9 125 56.0
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 5.4e-25 117.9 69 84.1
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 9.3e-25 117.1 83 72.3
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 8.7e-23 110.5 95 64.2
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 2.5e-22 109.0 103 60.2
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 9.0e-20 100.5 55 87.3
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.5e-19 99.8 72 69.4
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.6e-19 99.0 95 58.9
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 5.8e-19 97.8 80 65.0
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 5.8e-19 97.8 99 57.6
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 1.7e-18 96.3 94 53.2
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 7.1e-17 90.9 78 65.4
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.6e-16 88.2 46 95.7
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 4.6e-16 88.2 72 65.3
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 4.6e-16 88.2 98 52.0
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 7.9e-16 87.4 48 83.3
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 6.7e-15 84.3 63 66.7
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 1.4e-12 76.6 60 61.7
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 4.3e-06 55.1 71 45.1


User provided reference genes

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