Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 1.2e-178 629.8 347 100.0
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 4.7e-117 425.2 342 63.2
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 7.5e-115 417.9 346 62.4
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 9.7e-115 417.5 341 57.5
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 2.2e-114 416.4 343 67.9
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 4.8e-114 415.2 343 61.5
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 6.3e-114 414.8 341 58.1
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 8.3e-114 414.5 341 62.2
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.1e-113 414.1 347 60.8
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 1.8e-113 413.3 345 64.3
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 1.8e-113 413.3 345 64.6
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 5.3e-113 411.8 347 59.7
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.6e-112 410.2 351 66.7
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 2.0e-112 409.8 351 61.3
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 4.5e-112 408.7 340 57.1
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 7.7e-112 407.9 341 60.1
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 7.7e-112 407.9 343 60.1
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 7.7e-112 407.9 348 63.8
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 1.0e-111 407.5 350 60.0
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 1.7e-111 406.8 341 56.9
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 1.7e-111 406.8 341 57.5
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 2.2e-111 406.4 343 56.6
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 2.2e-111 406.4 348 65.5
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 3.8e-111 405.6 341 58.7
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 5.0e-111 405.2 349 60.2
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 8.5e-111 404.4 341 56.3
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.5e-110 403.7 340 55.3
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 5.5e-110 401.7 339 63.4
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 7.2e-110 401.4 349 59.9
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 7.2e-110 401.4 346 65.9
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 9.4e-110 401.0 342 64.9
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 1.6e-109 400.2 343 55.4
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.6e-109 400.2 343 61.5
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.6e-109 400.2 340 64.1
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 2.7e-109 399.4 344 58.1
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 3.6e-109 399.1 343 59.2
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 3.6e-109 399.1 341 65.1
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 3.6e-109 399.1 344 56.1
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.7e-109 398.7 343 59.2
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 4.7e-109 398.7 343 55.7
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 4.7e-109 398.7 349 61.0
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 6.1e-109 398.3 342 56.7
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 6.1e-109 398.3 344 55.2
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 6.1e-109 398.3 337 58.5
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.0e-109 397.9 356 54.5
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 8.0e-109 397.9 344 55.5
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 1.0e-108 397.5 343 59.5
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-108 397.1 342 65.2
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 1.8e-108 396.7 345 56.2
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.0e-108 396.0 343 58.6
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 4.0e-108 395.6 349 60.7
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.8e-108 394.4 341 64.5
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 1.2e-107 394.0 342 55.0
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 2.6e-107 392.9 348 58.3
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 4.4e-107 392.1 341 62.8
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 4.4e-107 392.1 339 65.8
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 5.7e-107 391.7 342 58.2
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 7.5e-107 391.3 345 58.6
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 9.8e-107 391.0 345 60.3
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 9.8e-107 391.0 347 61.4
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 9.8e-107 391.0 344 58.1
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 1.3e-106 390.6 341 56.3
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 2.2e-106 389.8 339 63.4
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 3.7e-106 389.0 344 55.8
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 3.7e-106 389.0 342 65.5
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 4.8e-106 388.7 349 56.2
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 4.8e-106 388.7 340 55.9
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 4.8e-106 388.7 342 62.6
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 8.3e-106 387.9 343 55.4
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 8.3e-106 387.9 346 64.5
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 8.3e-106 387.9 344 59.0
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.1e-105 387.5 342 63.5
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 2.4e-105 386.3 351 61.0
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 4.1e-105 385.6 341 62.5
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 4.1e-105 385.6 342 60.5
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 2.0e-104 383.3 341 58.4
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 4.5e-104 382.1 345 57.7
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.3e-103 380.6 346 53.8
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 3.8e-103 379.0 341 61.0
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 5.0e-103 378.6 342 52.3
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.1e-102 377.5 341 55.4
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 1.5e-102 377.1 366 50.8
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 2.5e-102 376.3 342 53.8
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 3.3e-102 375.9 345 62.9
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 4.2e-102 375.6 340 55.3
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 5.5e-102 375.2 340 55.0
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 5.5e-102 375.2 342 52.0
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 2.1e-101 373.2 341 57.2
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 2.8e-101 372.9 341 61.9
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.0e-100 370.9 340 60.3
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.5e-99 367.1 340 60.0
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 2.0e-99 366.7 324 54.9
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 5.7e-99 365.2 342 52.9
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 5.7e-99 365.2 347 49.0
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 7.5e-99 364.8 346 56.1
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 9.8e-99 364.4 305 58.4
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.2e-98 363.2 359 55.2
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 4.9e-98 362.1 340 52.4
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 6.3e-98 361.7 350 58.3
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 6.3e-98 361.7 348 49.1
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 8.3e-98 361.3 343 57.1
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 3.2e-97 359.4 342 52.0
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.2e-96 357.5 340 52.1
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 1.6e-96 357.1 341 59.8
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 2.7e-96 356.3 352 55.1
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 3.5e-96 355.9 340 52.9
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 4.5e-96 355.5 442 44.1
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 1.7e-95 353.6 345 53.9
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.7e-95 353.6 343 54.8
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 2.9e-95 352.8 340 50.9
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 6.6e-95 351.7 345 53.0
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 1.5e-94 350.5 340 49.7
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.5e-94 350.5 345 49.6
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 2.5e-94 349.7 345 52.8
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 4.3e-94 349.0 342 53.2
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 9.5e-94 347.8 340 56.8
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 9.5e-94 347.8 353 54.7
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.6e-93 347.1 339 49.0
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 1.6e-93 347.1 342 52.0
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 3.6e-93 345.9 342 53.5
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 4.7e-93 345.5 341 53.1
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 6.1e-93 345.1 342 50.6
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 8.0e-93 344.7 340 50.3
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 8.0e-93 344.7 335 56.1
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 1.8e-92 343.6 342 57.0
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 2.0e-91 340.1 342 49.7
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 3.4e-91 339.3 302 64.9
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 9.2e-89 331.3 343 47.8
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 7.3e-86 321.6 426 50.0
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 3.1e-84 316.2 230 64.3
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.4e-83 312.8 353 52.4
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 9.8e-83 311.2 289 57.8
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 7.1e-81 305.1 292 56.5
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.3e-79 300.1 296 51.4
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 5.6e-78 295.4 335 43.6
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 2.3e-76 290.0 337 46.3
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 3.4e-75 286.2 295 48.8
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.9e-73 280.4 340 45.0
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 4.1e-73 279.3 314 46.8
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 2.7e-72 276.6 295 57.3
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 3.0e-71 273.1 276 58.7
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 4.3e-70 269.2 338 37.9
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 2.6e-67 260.0 341 41.1
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 1.7e-66 257.3 241 58.5
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 6.4e-66 255.4 248 55.6
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 1.6e-64 250.8 283 45.9
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 2.7e-64 250.0 283 45.6
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 2.7e-64 250.0 247 53.8
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 3.0e-63 246.5 338 42.3
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 1.9e-62 243.8 187 61.5
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 2.1e-61 240.4 227 49.8
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.8e-60 237.3 240 47.5
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.8e-60 237.3 216 53.7
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.7e-58 230.7 227 50.2
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.6e-56 224.2 226 49.1
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 6.2e-53 212.2 223 49.3
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 1.8e-52 210.7 145 64.8
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 6.9e-52 208.8 238 42.9
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 2.2e-50 203.8 238 46.6
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 4.2e-49 199.5 241 41.5
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 9.3e-49 198.4 130 70.8
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 7.9e-48 195.3 229 45.4
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 4.8e-37 159.5 102 72.5
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.6e-35 152.1 140 51.4
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 1.4e-28 131.3 73 78.1
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.5e-27 127.9 73 75.3
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.0e-26 125.2 128 48.4
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.7e-26 124.4 131 48.1
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 2.1e-24 117.5 126 49.2
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 5.7e-22 109.4 341 24.6
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 9.1e-20 102.1 145 33.1
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.2e-16 91.7 54 61.1
Cre02.g099650 Chlamydomonas reinhardtii HOM05D004071 ORTHO05D004501 7.4e-14 82.4 217 25.3
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.7e-14 82.0 54 70.4
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 3.3e-06 57.0 68 35.3


User provided reference genes

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