Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g10721 Utricularia gibba HOM05D002544 ORTHO05D007277 9.2e-47 189.9 97 100.0
Migut.K00934 Erythranthe guttata HOM05D002544 ORTHO05D007277 5.3e-18 94.4 87 57.5
SalBow5G3645 Salvia bowleyana HOM05D002544 ORTHO05D007277 2.1e-14 82.4 87 51.7
SGA_v2.0_scaffold45G17141 Striga asiatica HOM05D002544 ORTHO05D007277 2.1e-14 82.4 94 53.2
AT5G37530 Arabidopsis thaliana HOM05D002544 ORTHO05D007277 3.5e-14 81.6 90 53.3
MSTRG.15655 Avicennia marina HOM05D002544 ORTHO05D007277 3.5e-14 81.6 87 52.9
Glyma.14G212800 Glycine max HOM05D002544 ORTHO05D007277 5.1e-13 77.8 90 47.8
FvH4_1g29991 Fragaria vesca HOM05D002544 ORTHO05D007277 6.7e-13 77.4 101 49.5
Phvul.008G237900 Phaseolus vulgaris HOM05D002544 ORTHO05D007277 8.7e-13 77.0 90 48.9
VMungo0647G0515 Vigna mungo HOM05D002544 ORTHO05D007277 8.7e-13 77.0 90 48.9
Prupe.3G165000 Prunus persica HOM05D002544 ORTHO05D007277 1.9e-12 75.9 86 52.3
LjContig00141g0018139 Lotus japonicus HOM05D002544 ORTHO05D007277 2.5e-12 75.5 90 48.9
Aqoxy3G04065 Aquilegia oxysepala HOM05D002544 ORTHO05D007277 3.3e-12 75.1 95 51.6
AL7G46290 Arabidopsis lyrata HOM05D002544 ORTHO05D007277 4.3e-12 74.7 90 51.1
arahy.Tifrunner.gnm1.ann1.8QPJ7C Arachis hypogaea HOM05D002544 ORTHO05D007277 4.3e-12 74.7 89 47.2
arahy.Tifrunner.gnm1.ann1.N8969K Arachis hypogaea HOM05D002544 ORTHO05D007277 4.3e-12 74.7 89 47.2
RcHm_v2.0_Chr3g0492321 Rosa chinensis HOM05D002544 ORTHO05D007277 4.3e-12 74.7 98 49.0
BcaC02g09580 Brassica carinata HOM05D002544 ORTHO05D007277 7.4e-12 73.9 86 48.8
C04p44390 Brassica napus HOM05D002544 ORTHO05D007277 7.4e-12 73.9 86 48.8
Lj2C517G4 Lonicera japonica HOM05D002544 ORTHO05D007277 7.4e-12 73.9 92 48.9
Medtr5g077840 Medicago truncatula HOM05D002544 ORTHO05D007277 7.4e-12 73.9 91 46.2
arahy.Tifrunner.gnm1.ann1.F4VH9C Arachis hypogaea HOM05D002544 ORTHO05D007277 9.7e-12 73.6 89 47.2
FAN26G0021 Fragaria x ananassa HOM05D002544 ORTHO05D007277 1.6e-11 72.8 94 53.2
Glyma.02G243700 Glycine max HOM05D002544 ORTHO05D007277 1.6e-11 72.8 91 49.5
CiPaw.03G074400 Carya illinoinensis HOM05D002544 ORTHO05D007277 3.7e-11 71.6 95 49.5
CANSAT54G1265 Cannabis sativa HOM05D002544 ORTHO05D007277 8.2e-11 70.5 91 46.2
Sp7g04620 Schrenkiella parvula HOM05D002544 ORTHO05D007277 8.2e-11 70.5 90 47.8
Ca_26386_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007277 1.1e-10 70.1 91 46.2
Carub.0007s3270 Capsella rubella HOM05D002544 ORTHO05D007277 1.4e-10 69.7 88 53.4
arahy.Tifrunner.gnm1.ann1.Y37JRT Arachis hypogaea HOM05D002544 ORTHO05D007277 1.8e-10 69.3 87 46.0
Eucgr.F02880 Eucalyptus grandis HOM05D002544 ORTHO05D007277 1.8e-10 69.3 93 45.2
Ca_22253_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007277 2.4e-10 68.9 91 46.2
Hma1.2p1_1443F.1_g283880 Hydrangea macrophylla HOM05D002544 ORTHO05D007277 2.4e-10 68.9 93 46.2
Potri.004G083200 Populus trichocarpa HOM05D002544 ORTHO05D007277 2.4e-10 68.9 95 47.4
THA.LOC104823837 Tarenaya hassleriana HOM05D002544 ORTHO05D007277 2.4e-10 68.9 90 50.0
GSVIVG01015995001 Vitis vinifera HOM05D002544 ORTHO05D007277 3.1e-10 68.6 96 45.8
A04p10670 Brassica napus HOM05D002544 ORTHO05D007277 4.1e-10 68.2 89 49.4
MD09G1267400 Malus domestica HOM05D002544 ORTHO05D007277 5.3e-10 67.8 91 46.2
Manes.17G002000 Manihot esculenta HOM05D002544 ORTHO05D007277 6.9e-10 67.4 94 46.8
Cc07_g13180 Coffea canephora HOM05D002544 ORTHO05D007277 9.0e-10 67.0 95 43.2
HanXRQChr16g0532851 Helianthus annuus HOM05D002544 ORTHO05D007277 1.2e-09 66.6 96 45.8
QL02p059524 Quercus lobata HOM05D002544 ORTHO05D007277 2.0e-09 65.9 94 45.7
vmacro20588 Vaccinium macrocarpon HOM05D002544 ORTHO05D007277 2.6e-09 65.5 95 43.2
PSO063G7385 Papaver somniferum HOM05D002544 ORTHO05D007277 3.4e-09 65.1 92 46.7
TAR374G1249 Trochodendron aralioides HOM05D002544 ORTHO05D007277 3.4e-09 65.1 95 44.2
BolC4t26010H Brassica oleracea HOM05D002544 ORTHO05D007277 4.5e-09 64.7 87 48.3
Sc04g0005090 Simmondsia chinensis HOM05D002544 ORTHO05D007277 4.5e-09 64.7 96 42.7
BcaB06g27087 Brassica carinata HOM05D002544 ORTHO05D007277 5.9e-09 64.3 87 47.1
Os06g0251000 Oryza sativa ssp. japonica HOM05D002544 ORTHO05D007277 5.9e-09 64.3 91 46.2
Gohir.D11G175100 Gossypium hirsutum HOM05D002544 ORTHO05D007277 7.6e-09 63.9 89 46.1
Gorai.007G187700 Gossypium raimondii HOM05D002544 ORTHO05D007277 7.6e-09 63.9 89 46.1
QL03p020238 Quercus lobata HOM05D002544 ORTHO05D007277 7.6e-09 63.9 93 45.2
Thecc.04G063800 Theobroma cacao HOM05D002544 ORTHO05D007277 7.6e-09 63.9 91 46.2
Atru.chr1.2027 Acer truncatum HOM05D002544 ORTHO05D007277 1.0e-08 63.5 92 47.8
Gohir.A11G168900 Gossypium hirsutum HOM05D002544 ORTHO05D007277 1.0e-08 63.5 89 46.1
Ah.11g047270 Amaranthus hybridus HOM05D002544 ORTHO05D007277 1.3e-08 63.2 94 46.8
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 1.3e-08 63.2 93 45.2
PSO421G0270 Papaver somniferum HOM05D002544 ORTHO05D007277 1.3e-08 63.2 92 46.7
CSS0009784 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007277 1.7e-08 62.8 86 46.5
Duzib138G1710 Durio zibethinus HOM05D002544 ORTHO05D007277 1.7e-08 62.8 91 45.1
CSS0024967 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007277 2.2e-08 62.4 86 46.5
Lalb_Chr04g0251431 Lupinus albus HOM05D002544 ORTHO05D007277 2.9e-08 62.0 87 44.8
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 2.9e-08 62.0 113 43.4
Actinidia17195 Actinidia chinensis HOM05D002544 ORTHO05D007277 3.8e-08 61.6 95 41.1
BraA04t16734Z Brassica rapa HOM05D002544 ORTHO05D007277 3.8e-08 61.6 99 46.5
ClCG05G002460 Citrullus lanatus HOM05D002544 ORTHO05D007277 3.8e-08 61.6 91 46.2
ECA240G4132 Erigeron canadensis HOM05D002544 ORTHO05D004529 3.8e-08 61.6 101 42.6
Sed0005203 Sechium edule HOM05D002544 ORTHO05D007277 8.5e-08 60.5 93 44.1
Sopen05g029600 Solanum pennellii HOM05D002544 ORTHO05D007277 1.1e-07 60.1 94 43.6
EL10Ac5g11231 Beta vulgaris HOM05D002544 ORTHO05D007277 1.4e-07 59.7 91 42.9
COL.COLO4_11381 Corchorus olitorius HOM05D002544 ORTHO05D007277 1.9e-07 59.3 91 41.8
Nitab4.5_0010055g0010 Nicotiana tabacum HOM05D002544 ORTHO05D007277 1.9e-07 59.3 94 41.5
CAN.G733.10 Capsicum annuum HOM05D002544 ORTHO05D007277 3.2e-07 58.5 87 42.5
Solyc05g051230.4 Solanum lycopersicum HOM05D002544 ORTHO05D007277 3.2e-07 58.5 94 42.6
PGSC0003DMG401014608 Solanum tuberosum HOM05D002544 ORTHO05D007277 9.3e-07 57.0 94 42.6
Nitab4.5_0000777g0030 Nicotiana tabacum HOM05D002544 ORTHO05D007277 1.2e-06 56.6 94 39.4
TWI74G0587 Tripterygium wilfordii HOM05D002544 ORTHO05D007277 1.2e-06 56.6 87 44.8
Zm00001eb280220 Zea mays HOM05D002544 ORTHO05D007277 1.2e-06 56.6 91 40.7
HPP92_021315 Vanilla planifolia HOM05D002544 ORTHO05D007277 2.1e-06 55.8 103 42.7
CDE05G0883 Ceratophyllum demersum HOM05D002544 ORTHO05D007277 2.7e-06 55.5 109 37.6
ATR0021G008 Amborella trichopoda HOM05D002544 ORTHO05D007277 3.6e-06 55.1 92 44.6
Lsat_1_v5_gn_3_64121 Lactuca sativa HOM05D002544 ORTHO05D007277 4.6e-06 54.7 96 43.8
Aa31LG9G17540 Aethionema arabicum HOM05D002544 ORTHO05D007277 6.1e-06 54.3 50 56.0
AUR62032172 Chenopodium quinoa HOM05D002544 ORTHO05D007277 6.1e-06 54.3 98 40.8


User provided reference genes

Program Settings