Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_32.g10631 Utricularia gibba HOM05D000198 ORTHO05D006356 2.6e-71 271.9 137 100.0
unitig_32.g10659 Utricularia gibba HOM05D000198 ORTHO05D006356 8.0e-20 100.9 51 100.0
Migut.G00054 Erythranthe guttata HOM05D000198 ORTHO05D006356 5.0e-14 81.6 48 75.0
SalBow8G4861 Salvia bowleyana HOM05D000198 ORTHO05D006356 3.6e-12 75.5 48 68.8
SGA_v2.0_scaffold104G30081 Striga asiatica HOM05D000198 ORTHO05D006356 1.2e-10 70.5 48 64.6
SGA_v2.0_scaffold263G46020 Striga asiatica HOM05D000198 ORTHO05D006356 1.2e-10 70.5 48 64.6
SGA_v2.0_scaffold97G29254 Striga asiatica HOM05D000198 ORTHO05D006356 1.2e-10 70.5 48 64.6
MSTRG.10149 Avicennia marina HOM05D000198 ORTHO05D006356 1.5e-10 70.1 48 66.7
Manes.15G004800 Manihot esculenta HOM05D000198 ORTHO05D006356 4.4e-10 68.6 51 64.7
Sc25g0003270 Simmondsia chinensis HOM05D000198 ORTHO05D006356 4.4e-10 68.6 53 64.2
Duzib212G0663 Durio zibethinus HOM05D000198 ORTHO05D006356 5.7e-10 68.2 48 66.7
Lj6A690G69 Lonicera japonica HOM05D000198 ORTHO05D006356 7.5e-10 67.8 47 61.7
Rhsim04G0235300 Rhododendron simsii HOM05D000198 ORTHO05D006356 7.5e-10 67.8 43 69.8
Ah.13g071920 Amaranthus hybridus HOM05D000198 ORTHO05D006356 9.8e-10 67.4 54 64.8
Ciclev10004594m.g Citrus clementina HOM05D000198 ORTHO05D006356 9.8e-10 67.4 43 72.1
Cc03_g00900 Coffea canephora HOM05D000198 ORTHO05D006356 9.8e-10 67.4 48 68.8
Prupe.1G118500 Prunus persica HOM05D000198 ORTHO05D006356 9.8e-10 67.4 48 64.6
GSVIVG01035003001 Vitis vinifera HOM05D000198 ORTHO05D006356 9.8e-10 67.4 54 63.0
MD13G1155400 Malus domestica HOM05D000198 ORTHO05D006356 1.7e-09 66.6 48 62.5
EL10Ac3g05491 Beta vulgaris HOM05D000198 ORTHO05D006356 2.2e-09 66.2 51 66.7
Ca_01850_v3 Cicer arietinum L. HOM05D000198 ORTHO05D006356 2.8e-09 65.9 52 65.4
Nitab4.5_0002150g0150 Nicotiana tabacum HOM05D000198 ORTHO05D006356 2.8e-09 65.9 49 65.3
Nitab4.5_0013613g0020 Nicotiana tabacum HOM05D000198 ORTHO05D006356 2.8e-09 65.9 53 62.3
RcHm_v2.0_Chr4g0424861 Rosa chinensis HOM05D000198 ORTHO05D006356 2.8e-09 65.9 50 66.0
TWI53G2032 Tripterygium wilfordii HOM05D000198 ORTHO05D006356 2.8e-09 65.9 53 62.3
ECA233G5766 Erigeron canadensis HOM05D000198 ORTHO05D006356 4.8e-09 65.1 48 64.6
Lj6g0007194 Lotus japonicus HOM05D000198 ORTHO05D006356 4.8e-09 65.1 50 60.0
Lj6g0022295 Lotus japonicus HOM05D000198 ORTHO05D006356 4.8e-09 65.1 50 60.0
PGR004G0803 Punica granatum HOM05D000198 ORTHO05D006356 4.8e-09 65.1 53 60.4
Sabra10G0111400 Salix brachista HOM05D000198 ORTHO05D006356 4.8e-09 65.1 50 66.0
Thecc.04G299600 Theobroma cacao HOM05D000198 ORTHO05D006356 4.8e-09 65.1 48 62.5
TPR.G27261 Trifolium pratense HOM05D000198 ORTHO05D006356 4.8e-09 65.1 50 60.0
Cpa.g.sc9.66 Carica papaya HOM05D000198 ORTHO05D006356 6.3e-09 64.7 43 69.8
Cfa015321 Carpinus fangiana HOM05D000198 ORTHO05D006356 6.3e-09 64.7 46 65.2
Glyma.07G240300 Glycine max HOM05D000198 ORTHO05D006356 6.3e-09 64.7 50 64.0
HanXRQChr13g0393411 Helianthus annuus HOM05D000198 ORTHO05D006356 6.3e-09 64.7 48 62.5
Medtr2g034160 Medicago truncatula HOM05D000198 ORTHO05D006356 6.3e-09 64.7 50 60.0
AUR62016198 Chenopodium quinoa HOM05D000198 ORTHO05D006356 8.3e-09 64.3 54 61.1
COL.COLO4_34626 Corchorus olitorius HOM05D000198 ORTHO05D006356 8.3e-09 64.3 48 60.4
Glyma.09G036000 Glycine max HOM05D000198 ORTHO05D006356 8.3e-09 64.3 49 65.3
Glyma.15G140900 Glycine max HOM05D000198 ORTHO05D006356 8.3e-09 64.3 49 65.3
PSO357G0208 Papaver somniferum HOM05D000198 ORTHO05D006356 8.3e-09 64.3 49 61.2
THA.LOC104818885 Tarenaya hassleriana HOM05D000198 ORTHO05D006356 8.3e-09 64.3 48 62.5
Actinidia15605 Actinidia chinensis HOM05D000198 ORTHO05D006356 1.1e-08 63.9 49 63.3
Dinv15183 Davidia involucrata HOM05D000198 ORTHO05D006356 1.1e-08 63.9 50 60.0
Phvul.003G113500 Phaseolus vulgaris HOM05D000198 ORTHO05D006356 1.1e-08 63.9 44 65.9
Hund03122 Selenicereus undatus HOM05D000198 ORTHO05D006356 1.1e-08 63.9 50 66.0
AUR62039290 Chenopodium quinoa HOM05D000198 ORTHO05D006356 1.4e-08 63.5 54 59.3
Lj4g0009022 Lotus japonicus HOM05D000198 ORTHO05D006356 1.4e-08 63.5 52 61.5
Actinidia40374 Actinidia chinensis HOM05D000198 ORTHO05D006356 1.8e-08 63.2 48 60.4
Eucgr.H04040 Eucalyptus grandis HOM05D000198 ORTHO05D006356 1.8e-08 63.2 51 58.8
Haze_01293 Corylus avellana HOM05D000198 ORTHO05D006356 2.4e-08 62.8 50 62.0
MD16G1154800 Malus domestica HOM05D000198 ORTHO05D006356 2.4e-08 62.8 48 60.4
PSO170G3445 Papaver somniferum HOM05D000198 ORTHO05D006356 2.4e-08 62.8 50 62.0
Peaxi162Scf00120g00020 Petunia axillaris HOM05D000198 ORTHO05D006356 2.4e-08 62.8 40 70.0
vmacro08054 Vaccinium macrocarpon HOM05D000198 ORTHO05D006356 2.4e-08 62.8 43 65.1
AL3G17750 Arabidopsis lyrata HOM05D000198 ORTHO05D006356 3.1e-08 62.4 47 59.6
AT3G66658 Arabidopsis thaliana HOM05D000198 ORTHO05D006356 3.1e-08 62.4 47 59.6
Carub.0003s0615 Capsella rubella HOM05D000198 ORTHO05D006356 3.1e-08 62.4 47 59.6
Thhalv10020345m.g Eutrema salsugineum HOM05D000198 ORTHO05D006356 3.1e-08 62.4 53 58.5
FvH4_4g19600 Fragaria vesca HOM05D000198 ORTHO05D006356 3.1e-08 62.4 40 70.0
FAN12G3961 Fragaria x ananassa HOM05D000198 ORTHO05D006356 3.1e-08 62.4 40 70.0
Gohir.D02G059100 Gossypium hirsutum HOM05D000198 ORTHO05D006356 3.1e-08 62.4 40 70.0
Gorai.005G066700 Gossypium raimondii HOM05D000198 ORTHO05D006356 3.1e-08 62.4 40 70.0
Psat1g161360 Pisum sativum HOM05D000198 ORTHO05D006356 3.1e-08 62.4 42 69.0
Sp3g05630 Schrenkiella parvula HOM05D000198 ORTHO05D006356 3.1e-08 62.4 53 58.5
Solyc12g099290.2 Solanum lycopersicum HOM05D000198 ORTHO05D006356 3.1e-08 62.4 50 58.0
Sopen12g033970 Solanum pennellii HOM05D000198 ORTHO05D006356 3.1e-08 62.4 50 58.0
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 3.1e-08 62.4 43 60.5
VMungo1215G0804 Vigna mungo HOM05D000198 ORTHO05D006356 3.1e-08 62.4 50 62.0
Lalb_Chr13g0298451 Lupinus albus HOM05D000198 ORTHO05D006356 4.1e-08 62.0 50 60.0
CAN.G484.59 Capsicum annuum HOM05D000198 ORTHO05D006356 5.4e-08 61.6 49 57.1
FAN07G1118 Fragaria x ananassa HOM05D000198 ORTHO05D006356 5.4e-08 61.6 43 62.8
Glyma.17G033100 Glycine max HOM05D000198 ORTHO05D006356 5.4e-08 61.6 40 70.0
Nn4g25579 Nelumbo nucifera HOM05D000198 ORTHO05D006356 5.4e-08 61.6 44 63.6
SEGI_22449 Sequoiadendron giganteum HOM05D000198 ORTHO05D006356 5.4e-08 61.6 42 66.7
TAR636G3353 Trochodendron aralioides HOM05D000198 ORTHO05D006356 5.4e-08 61.6 53 60.4
CSS0039927 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D006356 7.0e-08 61.2 53 56.6
CANSAT78G1506 Cannabis sativa HOM05D000198 ORTHO05D006356 7.0e-08 61.2 40 67.5
Lalb_Chr18g0058711 Lupinus albus HOM05D000198 ORTHO05D006356 7.0e-08 61.2 40 70.0
PGSC0003DMG400004698 Solanum tuberosum HOM05D000198 ORTHO05D006356 7.0e-08 61.2 50 56.0
CARHR081220 Cardamine hirsuta HOM05D000198 ORTHO05D006356 9.1e-08 60.8 44 61.4
Gohir.A02G054100 Gossypium hirsutum HOM05D000198 ORTHO05D006356 9.1e-08 60.8 40 67.5
Aqoxy5G02589 Aquilegia oxysepala HOM05D000198 ORTHO05D006356 1.2e-07 60.5 44 63.6
Aa31LG5G17230 Aethionema arabicum HOM05D000198 ORTHO05D006356 1.6e-07 60.1 47 57.4
DCAR_002508 Daucus carota HOM05D000198 ORTHO05D006356 1.6e-07 60.1 52 55.8
SHI00147 Sapria himalayana HOM05D000198 ORTHO05D006356 1.6e-07 60.1 45 57.8
CDE09G0351 Ceratophyllum demersum HOM05D000198 ORTHO05D006356 2.0e-07 59.7 48 56.2
Potri.008G106000 Populus trichocarpa HOM05D000198 ORTHO05D006356 2.0e-07 59.7 47 57.4
ATR0796G341 Amborella trichopoda HOM05D000198 ORTHO05D006356 2.7e-07 59.3 40 65.0
arahy.Tifrunner.gnm1.ann1.6QU7U5 Arachis hypogaea HOM05D000198 ORTHO05D006356 2.7e-07 59.3 40 67.5
arahy.Tifrunner.gnm1.ann1.F4QS6F Arachis hypogaea HOM05D000198 ORTHO05D006356 2.7e-07 59.3 40 67.5
MBI18_g32020_MAGBIO Magnolia biondii HOM05D000198 ORTHO05D006356 5.9e-07 58.2 40 65.0
Os07g0688800 Oryza sativa ssp. japonica HOM05D000198 ORTHO05D006356 5.9e-07 58.2 44 56.8
ClCG06G004610 Citrullus lanatus HOM05D000198 ORTHO05D006356 1.0e-06 57.4 42 61.9
Sed0015207 Sechium edule HOM05D000198 ORTHO05D006356 1.0e-06 57.4 43 58.1
Zm00001eb331300 Zea mays HOM05D000198 ORTHO05D006356 1.3e-06 57.0 49 55.1
TAR107G0002 Trochodendron aralioides HOM05D000198 ORTHO05D006356 1.7e-06 56.6 43 60.5
MELO3C021272.2 Cucumis melo HOM05D000198 ORTHO05D006356 2.3e-06 56.2 57 50.9
QL06p011923 Quercus lobata HOM05D000198 ORTHO05D006356 2.9e-06 55.8 40 65.0
VMungo0540G1183 Vigna mungo HOM05D000198 ORTHO05D006356 8.6e-06 54.3 43 55.8


User provided reference genes

Program Settings