Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_27.g25133 Utricularia gibba HOM05D000082 ORTHO05D000038 5.3e-62 240.7 112 100.0
unitig_699.g19461 Utricularia gibba HOM05D000082 ORTHO05D000038 2.4e-38 162.2 95 73.7
CSS0014646 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 1.0e-25 120.2 107 50.5
Migut.N02400 Erythranthe guttata HOM05D000082 ORTHO05D000038 1.4e-25 119.8 90 56.7
CSS0021895 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 1.8e-25 119.4 99 51.5
Hma1.2p1_1711F.1_g298670 Hydrangea macrophylla HOM05D000082 ORTHO05D000038 6.7e-25 117.5 93 55.9
Dinv16766 Davidia involucrata HOM05D000082 ORTHO05D000038 1.5e-24 116.3 99 51.5
Oeu013454.1 Olea europaea HOM05D000082 ORTHO05D000038 1.5e-24 116.3 106 50.9
unitig_27.g25016 Utricularia gibba HOM05D000082 ORTHO05D000038 1.5e-24 116.3 92 53.3
ECA234G4598 Erigeron canadensis HOM05D000082 ORTHO05D000038 5.7e-24 114.4 105 49.5
HanXRQChr10g0295881 Helianthus annuus HOM05D000082 ORTHO05D000038 7.4e-24 114.0 105 49.5
Lsat_1_v5_gn_5_107360 Lactuca sativa HOM05D000082 ORTHO05D000038 2.2e-23 112.5 104 46.2
CAN.G714.3 Capsicum annuum HOM05D000082 ORTHO05D000038 1.1e-22 110.2 102 50.0
vmacro14286 Vaccinium macrocarpon HOM05D000082 ORTHO05D000038 1.1e-22 110.2 100 55.0
CAN.G714.4 Capsicum annuum HOM05D000082 ORTHO05D000038 3.1e-22 108.6 102 49.0
MSTRG.12427 Avicennia marina HOM05D000082 ORTHO05D000038 7.0e-22 107.5 101 48.5
Rhsim01G0196000 Rhododendron simsii HOM05D000082 ORTHO05D000038 5.9e-21 104.4 103 47.6
Actinidia12280 Actinidia chinensis HOM05D000082 ORTHO05D000038 7.7e-21 104.0 107 43.9
Nitab4.5_0002915g0030 Nicotiana tabacum HOM05D000082 ORTHO05D000038 7.7e-21 104.0 102 46.1
Lj2P826T12 Lonicera japonica HOM05D000082 ORTHO05D000038 1.7e-20 102.8 89 50.6
Solyc01g009000.3 Solanum lycopersicum HOM05D000082 ORTHO05D000038 2.2e-20 102.4 98 49.0
Sopen01g004490 Solanum pennellii HOM05D000082 ORTHO05D000038 3.8e-20 101.7 102 47.1
PGSC0003DMG400022704 Solanum tuberosum HOM05D000082 ORTHO05D000038 5.0e-20 101.3 98 46.9
Rhsim13G0203100 Rhododendron simsii HOM05D000082 ORTHO05D000038 3.2e-19 98.6 110 41.8
Aqoxy2G00029 Aquilegia oxysepala HOM05D000082 ORTHO05D000038 7.2e-19 97.4 97 45.4
Actinidia22478 Actinidia chinensis HOM05D000082 ORTHO05D000038 1.2e-18 96.7 100 45.0
Hma1.2p1_2926F.1_g330470 Hydrangea macrophylla HOM05D000082 ORTHO05D000038 1.2e-18 96.7 84 51.2
SGA_v2.0_scaffold79G25548 Striga asiatica HOM05D000082 ORTHO05D000038 1.6e-18 96.3 103 46.6
LjContig00564g0026287 Lotus japonicus HOM05D000082 ORTHO05D000038 2.7e-18 95.5 101 43.6
DCAR_018947 Daucus carota HOM05D000082 ORTHO05D000038 1.0e-17 93.6 98 46.9
PSO675G6146 Papaver somniferum HOM05D000082 ORTHO05D000038 1.4e-17 93.2 92 47.8
Psat0s2703g0160 Pisum sativum HOM05D000082 ORTHO05D000038 2.3e-17 92.4 105 41.9
Actinidia07009 Actinidia chinensis HOM05D000082 ORTHO05D000038 3.0e-17 92.0 97 44.3
PSO541G5182 Papaver somniferum HOM05D000082 ORTHO05D000038 4.0e-17 91.7 92 46.7
HanXRQChr16g0514281 Helianthus annuus HOM05D000082 ORTHO05D000038 5.2e-17 91.3 96 42.7
TAR623G0090 Trochodendron aralioides HOM05D000082 ORTHO05D000038 1.2e-16 90.1 97 44.3
TAR369G1047 Trochodendron aralioides HOM05D000082 ORTHO05D000038 2.0e-16 89.4 101 43.6
Dinv16765 Davidia involucrata HOM05D000082 ORTHO05D000038 3.3e-16 88.6 84 48.8
arahy.Tifrunner.gnm1.ann1.BZ8WB7 Arachis hypogaea HOM05D000082 ORTHO05D000038 4.4e-16 88.2 110 39.1
arahy.Tifrunner.gnm1.ann1.K1TE33 Arachis hypogaea HOM05D000082 ORTHO05D000038 4.4e-16 88.2 110 39.1
Ca_06174_v3 Cicer arietinum L. HOM05D000082 ORTHO05D000038 4.4e-16 88.2 104 40.4
Potri.016G029300 Populus trichocarpa HOM05D000082 ORTHO05D000038 5.7e-16 87.8 108 44.4
Medtr5g088720 Medicago truncatula HOM05D000082 ORTHO05D000038 7.5e-16 87.4 104 40.4
Potri.006G032100 Populus trichocarpa HOM05D000082 ORTHO05D000038 9.7e-16 87.0 91 47.3
Ah.04g159500 Amaranthus hybridus HOM05D000082 ORTHO05D000038 1.3e-15 86.7 112 41.1
Manes.08G066100 Manihot esculenta HOM05D000082 ORTHO05D000038 1.7e-15 86.3 103 41.7
TPR.G16407 Trifolium pratense HOM05D000082 ORTHO05D000038 2.8e-15 85.5 103 39.8
Zm00001eb394660 Zea mays HOM05D000082 ORTHO05D000038 2.8e-15 85.5 89 42.7
Os03g0351800 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 3.7e-15 85.1 94 40.4
Glyma.14G039000 Glycine max HOM05D000082 ORTHO05D000038 4.8e-15 84.7 107 39.3
Phvul.008G204700 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 1.8e-14 82.8 105 41.0
QL07p013851 Quercus lobata HOM05D000082 ORTHO05D000038 1.8e-14 82.8 90 44.4
Sabra16G0033300 Salix brachista HOM05D000082 ORTHO05D000038 1.8e-14 82.8 93 44.1
THA.LOC104814453 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 1.8e-14 82.8 108 41.7
CiPaw.09G052300 Carya illinoinensis HOM05D000082 ORTHO05D000038 5.3e-14 81.3 89 42.7
Eucgr.K01683 Eucalyptus grandis HOM05D000082 ORTHO05D000038 5.3e-14 81.3 105 43.8
Cpa.g.sc39.6 Carica papaya HOM05D000082 ORTHO05D000038 7.0e-14 80.9 91 41.8
Duzib106G1871 Durio zibethinus HOM05D000082 ORTHO05D000038 9.1e-14 80.5 89 46.1
CDE09G1148 Ceratophyllum demersum HOM05D000082 ORTHO05D000038 1.2e-13 80.1 88 43.2
Ciclev10012279m.g Citrus clementina HOM05D000082 ORTHO05D000038 1.2e-13 80.1 104 41.3
Lj6g0013948 Lotus japonicus HOM05D000082 ORTHO05D000038 1.2e-13 80.1 99 39.4
Thecc.05G119300 Theobroma cacao HOM05D000082 ORTHO05D000038 1.2e-13 80.1 89 44.9
VMungo0647G1760 Vigna mungo HOM05D000082 ORTHO05D000038 1.2e-13 80.1 108 39.8
COL.COLO4_33523 Corchorus olitorius HOM05D000082 ORTHO05D000038 1.6e-13 79.7 89 44.9
TWI74G0677 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 1.6e-13 79.7 90 42.2
Lalb_Chr10g0106021 Lupinus albus HOM05D000082 ORTHO05D000038 2.0e-13 79.3 105 34.3
Sed0013028 Sechium edule HOM05D000082 ORTHO05D000038 2.0e-13 79.3 87 42.5
Aa31LG3G1270 Aethionema arabicum HOM05D000082 ORTHO05D000038 2.7e-13 79.0 108 40.7
Carub.0004s2315 Capsella rubella HOM05D000082 ORTHO05D000038 2.7e-13 79.0 110 40.9
Dinv17897 Davidia involucrata HOM05D000082 ORTHO05D000038 3.5e-13 78.6 98 39.8
Glyma.13G072800 Glycine max HOM05D000082 ORTHO05D000038 4.5e-13 78.2 105 38.1
Lalb_Chr04g0249431 Lupinus albus HOM05D000082 ORTHO05D000038 4.5e-13 78.2 105 35.2
Atru.chr1.1508 Acer truncatum HOM05D000082 ORTHO05D000038 7.7e-13 77.4 103 40.8
CiPaw.14G107800 Carya illinoinensis HOM05D000082 ORTHO05D000038 1.0e-12 77.0 109 34.9
ClCG03G014340 Citrullus lanatus HOM05D000082 ORTHO05D000038 1.0e-12 77.0 115 32.2
Thhalv10016932m.g Eutrema salsugineum HOM05D000082 ORTHO05D000038 1.0e-12 77.0 110 40.0
Gohir.D09G111900 Gossypium hirsutum HOM05D000082 ORTHO05D000038 1.0e-12 77.0 89 43.8
Sed0014601 Sechium edule HOM05D000082 ORTHO05D000038 1.0e-12 77.0 110 38.2
ClCG10G015980 Citrullus lanatus HOM05D000082 ORTHO05D000038 1.3e-12 76.6 87 39.1
Glyma.02G276700 Glycine max HOM05D000082 ORTHO05D000038 1.3e-12 76.6 106 36.8
Phvul.006G019600 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 1.3e-12 76.6 106 34.0
HPP92_014161 Vanilla planifolia HOM05D000082 ORTHO05D000038 1.3e-12 76.6 95 37.9
AUR62000242 Chenopodium quinoa HOM05D000082 ORTHO05D000038 2.2e-12 75.9 83 45.8
Hma1.2p1_0039F.1_g024810 Hydrangea macrophylla HOM05D000082 ORTHO05D000038 2.9e-12 75.5 92 38.0
EL10Ac4g10056 Beta vulgaris HOM05D000082 ORTHO05D000038 3.8e-12 75.1 82 43.9
MELO3C009781.2 Cucumis melo HOM05D000082 ORTHO05D000038 3.8e-12 75.1 87 40.2
Gohir.A09G115250 Gossypium hirsutum HOM05D000082 ORTHO05D000038 3.8e-12 75.1 87 43.7
Gorai.006G129700 Gossypium raimondii HOM05D000082 ORTHO05D000038 3.8e-12 75.1 87 43.7
Lalb_Chr17g0347721 Lupinus albus HOM05D000082 ORTHO05D000038 3.8e-12 75.1 105 36.2
Nn7g37025 Nelumbo nucifera HOM05D000082 ORTHO05D000038 3.8e-12 75.1 101 40.6
Sed0008024 Sechium edule HOM05D000082 ORTHO05D000038 3.8e-12 75.1 79 39.2
Glyma.10G101400 Glycine max HOM05D000082 ORTHO05D000038 5.0e-12 74.7 105 36.2
Sabra06G0021400 Salix brachista HOM05D000082 ORTHO05D000038 5.0e-12 74.7 94 42.6
MELO3C015603.2 Cucumis melo HOM05D000082 ORTHO05D000038 6.5e-12 74.3 115 31.3
Lalb_Chr02g0156711 Lupinus albus HOM05D000082 ORTHO05D000038 6.5e-12 74.3 92 38.0
Os01g0802000 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 6.5e-12 74.3 96 36.5
Phvul.007G243900 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 6.5e-12 74.3 105 36.2
Cfa019949 Carpinus fangiana HOM05D000082 ORTHO05D000038 1.1e-11 73.6 91 41.8
TWI77G0819 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 1.1e-11 73.6 90 38.9
CsaV3_3G040480 Cucumis sativus L. HOM05D000082 ORTHO05D000038 1.5e-11 73.2 87 39.1
PGR142G1240 Punica granatum HOM05D000082 ORTHO05D000038 1.5e-11 73.2 91 41.8
Sc09g0001180 Simmondsia chinensis HOM05D000082 ORTHO05D000038 1.5e-11 73.2 72 47.2
CANSAT54G1979 Cannabis sativa HOM05D000082 ORTHO05D000038 1.9e-11 72.8 105 37.1
Haze_20290 Corylus avellana HOM05D000082 ORTHO05D000038 1.9e-11 72.8 91 40.7
Prupe.3G067600 Prunus persica HOM05D000082 ORTHO05D000038 2.5e-11 72.4 67 50.7
CiPaw.13G145900 Carya illinoinensis HOM05D000082 ORTHO05D000038 3.2e-11 72.0 112 39.3
MD17G1191600 Malus domestica HOM05D000082 ORTHO05D000038 3.2e-11 72.0 105 37.1
Cfa010157 Carpinus fangiana HOM05D000082 ORTHO05D000038 4.2e-11 71.6 108 34.3
CiPaw.10G043900 Carya illinoinensis HOM05D000082 ORTHO05D000038 4.2e-11 71.6 86 39.5
CsaV3_1G041880 Cucumis sativus L. HOM05D000082 ORTHO05D000038 4.2e-11 71.6 115 30.4
SHI24487 Sapria himalayana HOM05D000082 ORTHO05D000038 4.2e-11 71.6 81 42.0
CsaV3_4G029180 Cucumis sativus L. HOM05D000082 ORTHO05D000038 5.5e-11 71.2 103 40.8
Glyma.02G161600 Glycine max HOM05D000082 ORTHO05D000038 5.5e-11 71.2 108 36.1
HPP92_006697 Vanilla planifolia HOM05D000082 ORTHO05D000038 5.5e-11 71.2 77 40.3
A03p22970 Brassica napus HOM05D000082 ORTHO05D000038 9.4e-11 70.5 109 39.4
CANSAT64G0993 Cannabis sativa HOM05D000082 ORTHO05D000038 9.4e-11 70.5 79 44.3
Carub.0005s2332 Capsella rubella HOM05D000082 ORTHO05D000038 9.4e-11 70.5 115 36.5
ClCG04G005960 Citrullus lanatus HOM05D000082 ORTHO05D000038 9.4e-11 70.5 103 40.8
Sed0008153 Sechium edule HOM05D000082 ORTHO05D000038 9.4e-11 70.5 103 41.7
BraA03t11520Z Brassica rapa HOM05D000082 ORTHO05D000038 1.2e-10 70.1 109 39.4
Haze_23543 Corylus avellana HOM05D000082 ORTHO05D000038 1.2e-10 70.1 110 35.5
PGR102G1259 Punica granatum HOM05D000082 ORTHO05D000038 1.2e-10 70.1 115 30.4
BcaC01g05373 Brassica carinata HOM05D000082 ORTHO05D000038 1.6e-10 69.7 110 38.2
C03p27250 Brassica napus HOM05D000082 ORTHO05D000038 1.6e-10 69.7 110 38.2
BolC3t15107H Brassica oleracea HOM05D000082 ORTHO05D000038 1.6e-10 69.7 110 38.2
MELO3C019142.2 Cucumis melo HOM05D000082 ORTHO05D000038 1.6e-10 69.7 103 40.8
Medtr0067s0100 Medicago truncatula HOM05D000082 ORTHO05D000038 1.6e-10 69.7 102 33.3
CDE02G0864 Ceratophyllum demersum HOM05D000082 ORTHO05D000038 2.3e-09 65.9 115 33.9
TPR.G11951 Trifolium pratense HOM05D000082 ORTHO05D000038 2.3e-09 65.9 96 33.3
Cc01_g07110 Coffea canephora HOM05D000082 ORTHO05D000038 5.2e-09 64.7 40 62.5
ECA236G2342 Erigeron canadensis HOM05D000082 ORTHO05D000038 5.2e-09 64.7 112 33.0
MD09G1209600 Malus domestica HOM05D000082 ORTHO05D000038 5.2e-09 64.7 104 34.6
BcaB01g03510 Brassica carinata HOM05D000082 ORTHO05D000038 6.8e-09 64.3 79 41.8
BcaB01g03511 Brassica carinata HOM05D000082 ORTHO05D000038 6.8e-09 64.3 79 41.8
BcaB01g03512 Brassica carinata HOM05D000082 ORTHO05D000038 6.8e-09 64.3 79 41.8
CDE08G0325 Ceratophyllum demersum HOM05D000082 ORTHO05D000038 6.8e-09 64.3 63 49.2
Eucgr.B03765 Eucalyptus grandis HOM05D000082 ORTHO05D000038 6.8e-09 64.3 100 36.0
Sc16g0010840 Simmondsia chinensis HOM05D000082 ORTHO05D000038 6.8e-09 64.3 62 45.2
Eucgr.J00661 Eucalyptus grandis HOM05D000082 ORTHO05D000038 8.8e-09 63.9 101 34.7
Ca_13674_v3 Cicer arietinum L. HOM05D000082 ORTHO05D000038 1.2e-08 63.5 98 34.7
QL01p020702 Quercus lobata HOM05D000082 ORTHO05D000038 1.2e-08 63.5 111 33.3
RcHm_v2.0_Chr6g0302621 Rosa chinensis HOM05D000082 ORTHO05D000038 1.2e-08 63.5 104 33.7
FAN20G1857 Fragaria x ananassa HOM05D000082 ORTHO05D000038 3.4e-08 62.0 41 58.5
Lj5g0012015 Lotus japonicus HOM05D000082 ORTHO05D000038 4.4e-08 61.6 114 32.5
Rhsim04G0118400 Rhododendron simsii HOM05D000082 ORTHO05D000038 4.4e-08 61.6 91 36.3
FvH4_2g38690 Fragaria vesca HOM05D000082 ORTHO05D000038 5.7e-08 61.2 67 44.8
Nn2g14591 Nelumbo nucifera HOM05D000082 ORTHO05D000038 9.8e-08 60.5 96 33.3
vmacro08974 Vaccinium macrocarpon HOM05D000082 ORTHO05D000038 1.3e-07 60.1 81 39.5
MSTRG.26184 Avicennia marina HOM05D000082 ORTHO05D000038 1.7e-07 59.7 109 33.9
FAN27G2544 Fragaria x ananassa HOM05D000082 ORTHO05D000038 3.7e-07 58.5 41 56.1
DCAR_020606 Daucus carota HOM05D000082 ORTHO05D000038 4.8e-07 58.2 98 33.7
Os05g0495000 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 4.8e-07 58.2 95 31.6
Peaxi162Scf00050g00207 Petunia axillaris HOM05D000082 ORTHO05D000038 6.3e-07 57.8 45 55.6
CiPaw.13G090600 Carya illinoinensis HOM05D000082 ORTHO05D001639 1.1e-06 57.0 110 34.5
MSTRG.19772 Avicennia marina HOM05D000082 ORTHO05D000038 3.1e-06 55.5 79 34.2
Phvul.006G019700 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 7.0e-06 54.3 44 54.5
Glyma.13G072900 Glycine max HOM05D000082 ORTHO05D000038 9.1e-06 53.9 67 40.3


User provided reference genes

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