Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 2.6e-170 602.1 325 100.0
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 4.0e-70 269.2 328 43.6
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 8.4e-68 261.5 276 49.3
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 1.7e-65 253.8 312 42.0
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 2.3e-65 253.4 310 43.2
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 1.9e-64 250.4 313 41.2
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 3.3e-64 249.6 294 43.9
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 4.3e-64 249.2 291 43.6
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 5.6e-64 248.8 276 47.5
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 7.3e-64 248.4 328 40.5
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 2.8e-63 246.5 307 40.7
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 2.8e-63 246.5 304 42.8
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 2.8e-63 246.5 292 43.5
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 4.8e-63 245.7 300 42.0
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 4.8e-63 245.7 300 42.0
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 6.2e-63 245.4 315 41.6
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 8.1e-63 245.0 310 40.6
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 1.8e-62 243.8 262 45.0
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 2.4e-62 243.4 308 39.6
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 4.0e-62 242.7 304 42.4
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 5.3e-62 242.3 326 40.5
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 5.3e-62 242.3 315 41.0
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 6.9e-62 241.9 314 40.1
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 9.0e-62 241.5 258 46.5
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 2.0e-61 240.4 309 41.1
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 2.6e-61 240.0 289 45.0
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 5.8e-61 238.8 274 42.3
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 7.6e-61 238.4 313 41.2
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 1.4e-59 234.2 316 38.6
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.4e-59 234.2 327 39.8
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 2.4e-59 233.4 321 39.6
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 5.4e-59 232.3 279 39.4
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 1.6e-58 230.7 320 39.4
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.1e-58 230.3 312 38.1
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.7e-58 229.9 321 39.6
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 2.7e-58 229.9 312 37.8
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 2.7e-58 229.9 308 40.3
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 4.6e-58 229.2 253 44.7
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 4.6e-58 229.2 266 46.2
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 4.6e-58 229.2 325 36.6
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 7.9e-58 228.4 332 38.3
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 1.0e-57 228.0 270 42.2
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 1.0e-57 228.0 184 58.2
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 1.3e-57 227.6 253 45.1
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 1.3e-57 227.6 295 39.0
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 6.7e-57 225.3 280 39.6
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 8.7e-57 224.9 294 43.5
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 8.7e-57 224.9 337 38.6
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 3.3e-56 223.0 312 41.3
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 4.3e-56 222.6 279 41.2
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 5.6e-56 222.2 264 39.8
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 9.6e-56 221.5 275 40.7
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 1.3e-55 221.1 319 36.4
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 1.3e-55 221.1 299 40.1
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 2.8e-55 219.9 270 42.6
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 6.2e-55 218.8 276 41.7
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 2.4e-54 216.9 312 40.4
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 4.0e-54 216.1 304 39.8
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 6.9e-54 215.3 318 38.7
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 2.0e-53 213.8 280 38.2
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 2.6e-53 213.4 272 42.3
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 2.2e-52 210.3 300 38.3
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 6.4e-52 208.8 261 40.6
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 5.5e-51 205.7 330 36.7
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 2.7e-50 203.4 306 37.9
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 7.9e-50 201.8 187 49.2
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 1.3e-49 201.1 184 51.6
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 3.0e-49 199.9 293 36.5
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 6.7e-49 198.7 284 38.7
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 2.5e-48 196.8 174 52.3
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 4.3e-48 196.1 286 37.8
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 5.6e-48 195.7 180 47.8
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 7.4e-48 195.3 310 36.1
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 1.3e-47 194.5 180 47.2
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 2.4e-46 190.3 299 37.1
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 2.4e-46 190.3 305 36.4
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 3.1e-46 189.9 184 48.9
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 4.5e-45 186.0 295 36.6
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 7.6e-45 185.3 301 34.9
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 3.2e-43 179.9 306 35.6
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 4.2e-43 179.5 289 37.0
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 1.6e-42 177.6 253 37.5
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 3.3e-40 169.9 292 33.6
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 5.7e-40 169.1 292 33.6
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 2.1e-39 167.2 286 35.7
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 6.9e-38 162.2 196 41.8
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 6.9e-38 162.2 196 41.8
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 1.5e-37 161.0 184 40.8
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 2.6e-37 160.2 325 33.5
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 2.6e-37 160.2 203 44.8
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 3.4e-37 159.8 229 36.7
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 8.7e-33 145.2 238 35.3
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 3.4e-29 133.3 314 30.3
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 7.7e-29 132.1 292 30.8
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 1.4e-27 127.9 180 37.8
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 1.8e-25 120.9 151 44.4
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 3.0e-25 120.2 174 37.9
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 5.7e-24 115.9 104 53.8
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 1.3e-23 114.8 151 43.7
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 9.1e-22 108.6 134 44.8
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 4.4e-16 89.7 75 48.0
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 5.3e-14 82.8 85 44.7
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 1.0e-09 68.6 85 36.5
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 1.0e-09 68.6 52 48.1
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 6.7e-09 65.9 57 43.9
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 8.8e-09 65.5 112 31.2
Atru.chr3.2651 Acer truncatum HOM05D006404 ORTHO05D008170 2.4e-06 57.4 94 39.4


User provided reference genes

Program Settings