Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 2.0e-150 535.8 288 100.0
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 1.8e-98 363.2 262 78.2
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 6.7e-93 344.7 260 74.2
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 4.8e-91 338.6 260 74.2
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 2.4e-90 336.3 287 69.3
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 7.6e-89 331.3 286 69.9
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 2.9e-88 329.3 259 70.7
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 4.9e-88 328.6 262 70.6
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 4.9e-88 328.6 263 70.7
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 6.5e-88 328.2 269 70.3
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 1.4e-87 327.0 265 70.6
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 7.1e-87 324.7 260 70.8
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 1.1e-84 317.4 264 68.6
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.1e-84 317.4 260 69.6
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 1.5e-84 317.0 270 67.0
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 2.5e-84 316.2 260 69.6
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 3.3e-84 315.8 262 69.8
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 7.4e-84 314.7 259 70.7
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 7.4e-84 314.7 259 69.5
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 4.8e-83 312.0 262 67.9
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 6.3e-83 311.6 257 69.3
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 6.3e-83 311.6 292 66.1
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 8.2e-83 311.2 260 68.8
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.1e-82 310.8 265 69.4
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 1.4e-82 310.5 264 67.4
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 1.8e-82 310.1 261 68.6
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 5.3e-82 308.5 261 68.2
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 6.9e-82 308.1 264 66.3
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 1.2e-81 307.4 262 70.2
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 1.5e-81 307.0 262 67.6
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 2.6e-81 306.2 273 66.3
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 5.9e-81 305.1 270 65.2
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.3e-80 303.9 257 68.5
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 2.2e-80 303.1 263 67.3
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 2.9e-80 302.8 278 64.7
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 2.9e-80 302.8 263 67.3
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 1.4e-79 300.4 261 68.6
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 1.4e-79 300.4 261 67.4
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 3.2e-79 299.3 261 68.2
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 5.5e-79 298.5 268 64.6
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.6e-78 297.0 263 65.8
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 1.6e-78 297.0 261 66.3
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 2.1e-78 296.6 264 63.3
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 4.6e-78 295.4 269 65.4
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 4.6e-78 295.4 274 62.4
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 4.6e-78 295.4 264 65.5
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 4.6e-78 295.4 265 65.3
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 7.9e-78 294.7 263 65.0
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.8e-77 293.5 265 64.5
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 2.3e-77 293.1 265 65.3
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.9e-77 292.4 265 64.5
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 6.7e-77 291.6 300 59.0
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 1.1e-76 290.8 258 64.7
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 5.7e-76 288.5 262 64.5
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.7e-75 285.8 265 64.2
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 1.8e-74 283.5 267 62.2
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 2.0e-73 280.0 262 64.1
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 1.7e-72 276.9 263 63.5
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 3.8e-72 275.8 284 61.6
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 8.5e-72 274.6 261 64.4
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 1.1e-71 274.2 257 63.0
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.9e-71 273.5 269 60.6
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 7.2e-71 271.6 262 64.1
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 2.7e-70 269.6 284 59.2
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.7e-70 269.6 263 59.7
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.7e-70 269.6 263 59.7
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 6.1e-70 268.5 278 60.4
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 6.1e-70 268.5 266 60.9
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 7.9e-70 268.1 260 59.2
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 1.4e-69 267.3 264 62.9
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.4e-69 267.3 257 64.6
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 2.3e-69 266.5 292 55.8
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 3.9e-69 265.8 262 63.0
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 5.1e-69 265.4 263 60.5
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 5.1e-69 265.4 267 59.2
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 5.1e-69 265.4 262 62.2
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 6.7e-69 265.0 275 61.1
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 8.8e-69 264.6 265 59.6
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 2.6e-68 263.1 265 60.0
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 3.3e-68 262.7 261 63.6
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 4.4e-68 262.3 263 60.1
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 4.4e-68 262.3 269 62.8
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 4.4e-68 262.3 263 62.0
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 7.4e-68 261.5 264 61.4
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 7.4e-68 261.5 265 59.6
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 7.4e-68 261.5 268 59.3
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 9.7e-68 261.2 262 60.7
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 3.7e-67 259.2 262 59.5
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 3.7e-67 259.2 262 59.5
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 3.7e-67 259.2 267 59.6
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 8.2e-67 258.1 267 59.2
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 1.8e-66 256.9 261 61.7
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 3.1e-66 256.1 259 60.6
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 3.1e-66 256.1 267 59.2
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 4.1e-66 255.8 270 57.8
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 5.3e-66 255.4 267 61.0
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 6.9e-66 255.0 292 55.1
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.5e-65 253.8 265 58.5
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 2.0e-65 253.4 261 60.2
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 3.4e-65 252.7 263 59.7
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 7.7e-65 251.5 261 61.7
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 1.0e-64 251.1 267 58.1
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 2.2e-64 250.0 246 61.4
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 2.2e-64 250.0 260 59.2
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 5.0e-64 248.8 259 57.9
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 6.5e-64 248.4 242 63.6
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 6.5e-64 248.4 263 59.7
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 6.5e-64 248.4 262 57.3
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 8.5e-64 248.1 265 58.5
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 3.9e-61 239.2 269 55.8
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 3.3e-60 236.1 277 53.8
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 1.4e-58 230.7 265 53.6
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 2.0e-57 226.9 258 56.6
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 8.5e-56 221.5 274 55.5
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 4.7e-54 215.7 180 68.3
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 1.0e-53 214.5 260 52.7
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 2.3e-53 213.4 266 51.1
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 5.2e-53 212.2 270 50.4
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 2.8e-51 206.5 265 51.7
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 7.7e-49 198.4 204 58.8
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 8.5e-48 194.9 264 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 1.9e-47 193.7 274 50.0
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 7.2e-47 191.8 275 47.3
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.2e-46 191.0 124 79.8
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 8.0e-46 188.3 190 58.9
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.3e-45 186.8 297 47.5
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 1.4e-37 161.0 165 59.4
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 8.8e-37 158.3 178 52.8
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 3.4e-36 156.4 313 38.0
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 3.7e-35 152.9 315 38.7
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 3.1e-34 149.8 243 46.9
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 4.5e-33 146.0 170 50.0
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 1.0e-32 144.8 91 87.9
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 5.0e-24 115.9 386 33.7
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 1.3e-19 101.3 228 40.4
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 2.2e-19 100.5 116 50.0
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 1.2e-09 68.2 52 71.2
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 1.5e-07 61.2 69 58.0
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 1.5e-07 61.2 37 75.7
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 3.3e-07 60.1 37 75.7
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 7.3e-07 58.9 36 75.0
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 2.1e-06 57.4 120 35.8


User provided reference genes

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