Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 1.1e-87 326.6 170 100.0
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 2.3e-48 196.1 178 59.6
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 5.2e-45 184.9 174 59.8
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 6.8e-45 184.5 176 58.0
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 1.2e-44 183.7 180 59.4
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 7.5e-44 181.0 170 55.3
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 1.3e-43 180.3 166 60.8
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 8.3e-43 177.6 174 55.7
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 8.3e-43 177.6 174 56.3
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 3.2e-42 175.6 177 57.6
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 4.1e-42 175.3 176 55.1
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 5.4e-42 174.9 175 57.7
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 4.6e-41 171.8 176 53.4
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 6.0e-41 171.4 174 55.7
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.0e-40 170.6 175 56.6
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.3e-40 170.2 175 54.3
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 3.0e-40 169.1 180 53.3
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 3.0e-40 169.1 179 54.7
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 5.0e-40 168.3 179 53.6
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 5.0e-40 168.3 175 54.3
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 5.0e-40 168.3 152 61.2
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 6.6e-40 167.9 174 56.3
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 8.6e-40 167.5 175 53.7
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 8.6e-40 167.5 172 54.1
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 1.1e-39 167.2 152 59.9
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.1e-39 167.2 177 54.2
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 1.5e-39 166.8 177 55.4
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.5e-39 166.8 177 55.4
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 1.5e-39 166.8 170 54.7
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 1.9e-39 166.4 169 55.0
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 2.5e-39 166.0 180 52.8
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 3.3e-39 165.6 173 54.3
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 3.3e-39 165.6 180 50.6
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 4.3e-39 165.2 172 54.7
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 4.3e-39 165.2 168 57.1
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 5.6e-39 164.9 178 52.2
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 5.6e-39 164.9 177 50.8
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 7.3e-39 164.5 180 52.8
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 7.3e-39 164.5 167 54.5
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 7.3e-39 164.5 166 54.8
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 1.2e-38 163.7 179 52.5
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 1.6e-38 163.3 184 52.2
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 1.6e-38 163.3 178 53.9
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 2.1e-38 162.9 176 52.3
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 2.1e-38 162.9 163 54.6
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 2.8e-38 162.5 176 52.8
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 2.8e-38 162.5 176 52.8
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 2.8e-38 162.5 168 55.4
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 3.6e-38 162.2 174 51.1
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 4.7e-38 161.8 173 53.2
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 6.2e-38 161.4 181 53.0
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 8.1e-38 161.0 149 60.4
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 1.1e-37 160.6 190 50.0
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 1.1e-37 160.6 168 55.4
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 1.1e-37 160.6 169 55.0
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 1.4e-37 160.2 138 60.1
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 1.4e-37 160.2 229 42.4
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 1.8e-37 159.8 171 53.2
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 1.8e-37 159.8 172 51.2
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 2.3e-37 159.5 150 56.0
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 2.3e-37 159.5 165 53.3
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 2.3e-37 159.5 182 52.2
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 3.1e-37 159.1 161 55.9
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 3.1e-37 159.1 170 52.9
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 5.2e-37 158.3 173 52.0
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 5.2e-37 158.3 171 53.2
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 6.8e-37 157.9 156 54.5
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 1.5e-36 156.8 147 55.8
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 2.6e-36 156.0 177 53.1
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 2.6e-36 156.0 171 52.0
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 2.6e-36 156.0 171 52.6
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 5.8e-36 154.8 168 52.4
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 9.8e-36 154.1 160 52.5
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 2.2e-35 152.9 182 50.0
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 3.7e-35 152.1 171 50.3
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 3.7e-35 152.1 155 51.6
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 3.7e-35 152.1 150 57.3
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 6.4e-35 151.4 171 50.3
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 6.4e-35 151.4 169 50.3
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 6.4e-35 151.4 149 57.0
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 6.4e-35 151.4 165 51.5
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 1.4e-34 150.2 150 54.0
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 1.4e-34 150.2 241 41.1
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 1.4e-34 150.2 174 50.0
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 1.9e-34 149.8 163 52.1
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 3.2e-34 149.1 146 54.8
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 4.1e-34 148.7 185 45.9
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 7.8e-33 144.4 177 46.3
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 1.7e-32 143.3 167 46.1
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 3.0e-32 142.5 177 45.8
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 3.0e-32 142.5 138 55.1
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 3.9e-32 142.1 176 46.6
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 5.1e-32 141.7 171 48.0
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 8.6e-32 141.0 172 48.3
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 8.6e-32 141.0 172 48.3
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 1.1e-31 140.6 170 46.5
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 1.1e-31 140.6 170 46.5
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 1.5e-31 140.2 179 44.7
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 1.5e-31 140.2 200 46.5
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 1.9e-31 139.8 178 46.1
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 1.9e-31 139.8 170 47.1
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 1.9e-31 139.8 148 50.0
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 1.9e-31 139.8 170 47.1
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 3.3e-31 139.0 147 49.7
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 7.3e-31 137.9 147 49.7
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 9.5e-31 137.5 146 48.6
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 1.2e-30 137.1 278 36.0
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 1.6e-30 136.7 154 54.5
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 1.6e-30 136.7 139 53.2
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 2.1e-30 136.3 121 60.3
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 3.1e-29 132.5 170 44.7
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 2.0e-28 129.8 152 48.0
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 2.0e-28 129.8 118 56.8
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 7.6e-28 127.9 121 55.4
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 2.4e-26 122.9 142 45.1
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 7.1e-26 121.3 158 43.0
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.2e-25 120.6 156 42.3
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.2e-25 120.6 156 42.3
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 3.9e-24 115.5 176 42.0
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.1e-23 114.0 151 41.1
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 2.5e-23 112.8 179 39.1
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 3.3e-23 112.5 115 50.4
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 7.3e-23 111.3 129 49.6
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 7.3e-23 111.3 129 49.6
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 6.9e-21 104.8 124 45.2
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 6.9e-21 104.8 245 32.2
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 2.0e-20 103.2 117 45.3
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.7e-19 100.1 103 57.3
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.4e-18 96.3 94 52.1
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 2.1e-17 93.2 135 38.5
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 4.6e-17 92.0 114 46.5
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 4.3e-15 85.5 170 36.5
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 2.4e-13 79.7 103 48.5
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 2.9e-11 72.8 86 48.8
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 9.3e-10 67.8 103 39.8


User provided reference genes

Program Settings