Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g9746 Utricularia gibba HOM05D004792 ORTHO05D005789 2.7e-61 238.4 116 100.0
Cc02_g12670 Coffea canephora HOM05D004792 ORTHO05D005789 6.8e-20 100.9 126 42.9
Nn1g03946 Nelumbo nucifera HOM05D004792 ORTHO05D005789 2.0e-16 89.4 155 38.1
Actinidia05593 Actinidia chinensis HOM05D004792 ORTHO05D005789 2.9e-15 85.5 127 37.8
Hma1.2p1_0144F.1_g065030 Hydrangea macrophylla HOM05D004792 ORTHO05D005789 5.0e-15 84.7 59 61.0
Os12g0634700 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 6.5e-15 84.3 136 37.5
Solyc02g078850.1 Solanum lycopersicum HOM05D004792 ORTHO05D005789 6.5e-15 84.3 146 36.3
vmacro22273 Vaccinium macrocarpon HOM05D004792 ORTHO05D005789 6.5e-15 84.3 160 35.0
Sopen02g023670 Solanum pennellii HOM05D004792 ORTHO05D005789 1.1e-14 83.6 146 36.3
TAR624G0278 Trochodendron aralioides HOM05D004792 ORTHO05D005789 1.5e-14 83.2 114 41.2
MBI02_g29949_MAGBIO Magnolia biondii HOM05D004792 ORTHO05D005789 3.2e-14 82.0 82 52.4
Medtr4g090520 Medicago truncatula HOM05D004792 ORTHO05D005789 4.2e-14 81.6 110 41.8
Dinv39793 Davidia involucrata HOM05D004792 ORTHO05D005789 5.5e-14 81.3 150 35.3
Nn1g06696 Nelumbo nucifera HOM05D004792 ORTHO05D005789 5.5e-14 81.3 94 44.7
Ca_00276_v3 Cicer arietinum L. HOM05D004792 ORTHO05D005789 7.2e-14 80.9 99 43.4
Nn025s41563 Nelumbo nucifera HOM05D004792 ORTHO05D005789 9.4e-14 80.5 54 61.1
Peaxi162Scf00031g00071 Petunia axillaris HOM05D004792 ORTHO05D005789 9.4e-14 80.5 132 39.4
TWI63G0005 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 9.4e-14 80.5 116 40.5
Ah.09g235930 Amaranthus hybridus HOM05D004792 ORTHO05D005789 1.2e-13 80.1 136 36.8
Aqoxy1G02657 Aquilegia oxysepala HOM05D004792 ORTHO05D005789 1.2e-13 80.1 59 57.6
Sabra11G0031300 Salix brachista HOM05D004792 ORTHO05D005789 1.2e-13 80.1 150 34.0
TAR626G0583 Trochodendron aralioides HOM05D004792 ORTHO05D005789 1.2e-13 80.1 89 46.1
unitig_749.g13788 Utricularia gibba HOM05D000041 ORTHO05D008933 1.2e-13 80.1 109 45.9
Atru.chr10.1978 Acer truncatum HOM05D004792 ORTHO05D005789 1.6e-13 79.7 90 45.6
arahy.Tifrunner.gnm1.ann1.1RAI3Q Arachis hypogaea HOM05D004792 ORTHO05D005789 1.6e-13 79.7 152 35.5
PGSC0003DMG400022371 Solanum tuberosum HOM05D004792 ORTHO05D005789 2.1e-13 79.3 103 42.7
Medtr2g012520 Medicago truncatula HOM05D004792 ORTHO05D005789 2.7e-13 79.0 99 42.4
THA.LOC104812802 Tarenaya hassleriana HOM05D004792 ORTHO05D005789 2.7e-13 79.0 124 37.1
TAR627G0338 Trochodendron aralioides HOM05D004792 ORTHO05D005789 2.7e-13 79.0 78 52.6
Psat1g207640 Pisum sativum HOM05D004792 ORTHO05D005789 4.7e-13 78.2 105 41.9
TPR.G36753 Trifolium pratense HOM05D004792 ORTHO05D005789 4.7e-13 78.2 99 42.4
Sc05g0007980 Simmondsia chinensis HOM05D004792 ORTHO05D005789 6.1e-13 77.8 129 35.7
EL10Ac8g20634 Beta vulgaris HOM05D004792 ORTHO05D005789 8.0e-13 77.4 117 38.5
Cpa.g.sc27.101 Carica papaya HOM05D004792 ORTHO05D005789 8.0e-13 77.4 112 38.4
Potri.011G045000 Populus trichocarpa HOM05D004792 ORTHO05D005789 8.0e-13 77.4 143 34.3
arahy.Tifrunner.gnm1.ann1.NPL2R3 Arachis hypogaea HOM05D004792 ORTHO05D005789 1.4e-12 76.6 153 34.0
TPR.G32413 Trifolium pratense HOM05D004792 ORTHO05D005789 1.4e-12 76.6 102 41.2
Oeu005073.1 Olea europaea HOM05D004792 ORTHO05D005789 1.8e-12 76.3 147 36.7
CANSAT56G3746 Cannabis sativa HOM05D004792 ORTHO05D005789 3.0e-12 75.5 100 40.0
ECA236G3117 Erigeron canadensis HOM05D004792 ORTHO05D005789 3.0e-12 75.5 147 35.4
Prupe.4G039400 Prunus persica HOM05D004792 ORTHO05D005789 3.0e-12 75.5 59 55.9
PGR042G0729 Punica granatum HOM05D004792 ORTHO05D005789 3.0e-12 75.5 103 40.8
TWI38G1637 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 3.0e-12 75.5 144 34.7
ATR0693G452 Amborella trichopoda HOM05D004792 ORTHO05D005789 5.2e-12 74.7 59 57.6
HanXRQChr04g0125741 Helianthus annuus HOM05D004792 ORTHO05D005789 5.2e-12 74.7 148 33.8
Phvul.006G190300 Phaseolus vulgaris HOM05D004792 ORTHO05D005789 5.2e-12 74.7 100 40.0
Thecc.06G195800 Theobroma cacao HOM05D004792 ORTHO05D005789 5.2e-12 74.7 59 54.2
Duzib235G1303 Durio zibethinus HOM05D004792 ORTHO05D005789 8.8e-12 73.9 100 39.0
Migut.M01156 Erythranthe guttata HOM05D004792 ORTHO05D005789 8.8e-12 73.9 149 34.2
Potri.004G036500 Populus trichocarpa HOM05D004792 ORTHO05D005789 1.2e-11 73.6 107 42.1
SGA_v2.0_scaffold100G29666 Striga asiatica HOM05D004792 ORTHO05D005789 1.2e-11 73.6 145 36.6
Glyma.13G244800 Glycine max HOM05D004792 ORTHO05D005789 1.5e-11 73.2 149 33.6
Ciclev10017067m.g Citrus clementina HOM05D004792 ORTHO05D005789 2.0e-11 72.8 59 52.5
COL.COLO4_31550 Corchorus olitorius HOM05D004792 ORTHO05D005789 2.0e-11 72.8 59 50.8
Glyma.15G068900 Glycine max HOM05D004792 ORTHO05D005789 2.0e-11 72.8 148 33.1
Lj6g0023604 Lotus japonicus HOM05D004792 ORTHO05D005789 2.0e-11 72.8 99 38.4
QL05p038407 Quercus lobata HOM05D004792 ORTHO05D005789 2.0e-11 72.8 99 39.4
SEGI_10462 Sequoiadendron giganteum HOM05D004792 ORTHO05D005789 2.0e-11 72.8 116 39.7
TWI38G1643 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 2.0e-11 72.8 114 36.0
VMungo0540G0301 Vigna mungo HOM05D004792 ORTHO05D005789 2.0e-11 72.8 59 52.5
Gohir.A06G123900 Gossypium hirsutum HOM05D004792 ORTHO05D005789 2.6e-11 72.4 59 54.2
Gorai.009G171900 Gossypium raimondii HOM05D004792 ORTHO05D005789 3.4e-11 72.0 97 41.2
RcHm_v2.0_Chr5g0006831 Rosa chinensis HOM05D004792 ORTHO05D005789 3.4e-11 72.0 95 43.2
Os03g0676300 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 4.4e-11 71.6 59 49.2
Carub.0002s0390 Capsella rubella HOM05D004792 ORTHO05D005789 5.7e-11 71.2 100 42.0
Gohir.A05G163900 Gossypium hirsutum HOM05D004792 ORTHO05D005789 7.5e-11 70.9 149 33.6
Gohir.D06G128800 Gossypium hirsutum HOM05D004792 ORTHO05D005789 7.5e-11 70.9 59 52.5
Gorai.010G150300 Gossypium raimondii HOM05D004792 ORTHO05D005789 7.5e-11 70.9 59 52.5
SalBow8G4104 Salvia bowleyana HOM05D004792 ORTHO05D005789 7.5e-11 70.9 98 40.8
THA.LOC104819068 Tarenaya hassleriana HOM05D004792 ORTHO05D005789 7.5e-11 70.9 140 35.0
Cfa000375 Carpinus fangiana HOM05D004792 ORTHO05D005789 9.8e-11 70.5 75 46.7
CiPaw.10G120700 Carya illinoinensis HOM05D004792 ORTHO05D005789 9.8e-11 70.5 105 37.1
Oeu026010.1 Olea europaea HOM05D004792 ORTHO05D005789 9.8e-11 70.5 142 31.7
Haze_06550 Corylus avellana HOM05D004792 ORTHO05D005789 1.3e-10 70.1 75 46.7
Manes.16G022700 Manihot esculenta HOM05D004792 ORTHO05D005789 1.3e-10 70.1 148 35.1
AL2G15070 Arabidopsis lyrata HOM05D004792 ORTHO05D005789 1.7e-10 69.7 77 48.1
CiPaw.09G160100 Carya illinoinensis HOM05D004792 ORTHO05D005789 1.7e-10 69.7 99 39.4
CDE05G1692 Ceratophyllum demersum HOM05D004792 ORTHO05D000003 1.7e-10 69.7 59 50.8
Lsat_1_v5_gn_7_19840 Lactuca sativa HOM05D004792 ORTHO05D005789 1.7e-10 69.7 144 34.7
Zm00001eb092170 Zea mays HOM05D004792 ORTHO05D005789 1.7e-10 69.7 83 48.2
MELO3C007319.2 Cucumis melo HOM05D004792 ORTHO05D005789 2.2e-10 69.3 99 40.4
Gohir.D05G166800 Gossypium hirsutum HOM05D004792 ORTHO05D005789 2.2e-10 69.3 97 40.2
MD10G1301000 Malus domestica HOM05D004792 ORTHO05D005789 2.2e-10 69.3 99 42.4
BcaC04g22318 Brassica carinata HOM05D004792 ORTHO05D005789 2.8e-10 68.9 95 42.1
C09p20730 Brassica napus HOM05D004792 ORTHO05D005789 2.8e-10 68.9 95 42.1
BolC9t54970H Brassica oleracea HOM05D004792 ORTHO05D005789 2.8e-10 68.9 95 42.1
Sed0027560 Sechium edule HOM05D004792 ORTHO05D005789 2.8e-10 68.9 124 35.5
GSVIVG01034659001 Vitis vinifera HOM05D004792 ORTHO05D005789 2.8e-10 68.9 76 46.1
CAN.G1705.1 Capsicum annuum HOM05D004792 ORTHO05D005789 3.7e-10 68.6 104 36.5
CARHR051360 Cardamine hirsuta HOM05D004792 ORTHO05D005789 3.7e-10 68.6 98 41.8
Lj1P1211T35 Lonicera japonica HOM05D004792 ORTHO05D005789 3.7e-10 68.6 144 34.7
Nitab4.5_0003223g0020 Nicotiana tabacum HOM05D004792 ORTHO05D005789 3.7e-10 68.6 86 41.9
PSO541G1127 Papaver somniferum HOM05D004792 ORTHO05D005789 3.7e-10 68.6 85 42.4
PSO675G5172 Papaver somniferum HOM05D004792 ORTHO05D005789 3.7e-10 68.6 85 42.4
Actinidia01923 Actinidia chinensis HOM05D001100 ORTHO05D001503 8.3e-10 67.4 145 33.8
MD05G1323200 Malus domestica HOM05D004792 ORTHO05D005789 8.3e-10 67.4 59 54.2
AL7G32380 Arabidopsis lyrata HOM05D004792 ORTHO05D005789 1.4e-09 66.6 135 33.3
BcaB07g31269 Brassica carinata HOM05D004792 ORTHO05D005789 1.4e-09 66.6 102 41.2
A09p12160 Brassica napus HOM05D010802 ORTHO05D012953 1.4e-09 66.6 75 44.0
A09p16820 Brassica napus HOM05D004792 ORTHO05D005789 1.4e-09 66.6 112 37.5
C09p14380 Brassica napus HOM05D010802 ORTHO05D012953 1.4e-09 66.6 75 44.0
BraA09t36860Z Brassica rapa HOM05D010802 ORTHO05D012953 1.4e-09 66.6 75 44.0
BraA09t37319Z Brassica rapa HOM05D004792 ORTHO05D005789 1.4e-09 66.6 112 37.5
Hma1.2p1_1363F.1_g278365 Hydrangea macrophylla HOM05D004792 ORTHO05D005789 1.4e-09 66.6 92 41.3
Zm00001eb217390 Zea mays HOM05D004792 ORTHO05D005789 1.4e-09 66.6 59 47.5
Nitab4.5_0006260g0010 Nicotiana tabacum HOM05D004792 ORTHO05D005789 1.8e-09 66.2 86 41.9
Sabra04G0022200 Salix brachista HOM05D004792 ORTHO05D005789 1.8e-09 66.2 147 33.3
BcaC06g30668 Brassica carinata HOM05D004792 ORTHO05D005789 2.4e-09 65.9 59 49.2
Carub.0007s1976 Capsella rubella HOM05D004792 ORTHO05D005789 2.4e-09 65.9 59 49.2
CsaV3_6G049770 Cucumis sativus L. HOM05D004792 ORTHO05D005789 2.4e-09 65.9 128 33.6
BcaNung00848 Brassica carinata HOM05D004792 ORTHO05D005789 3.1e-09 65.5 59 49.2
BolC7t45626H Brassica oleracea HOM05D004792 ORTHO05D005789 3.1e-09 65.5 59 49.2
CARHR228340 Cardamine hirsuta HOM05D004792 ORTHO05D005789 3.1e-09 65.5 136 34.6
HPP92_018770 Vanilla planifolia HOM05D004792 ORTHO05D005789 3.1e-09 65.5 139 35.3
AT4G21620 Arabidopsis thaliana HOM05D004792 ORTHO05D005789 5.4e-09 64.7 135 34.8
BraA03t14358Z Brassica rapa HOM05D004792 ORTHO05D005789 5.4e-09 64.7 87 44.8
CDE05G2245 Ceratophyllum demersum HOM05D004792 ORTHO05D005789 9.1e-09 63.9 72 45.8
ClCG01G022580 Citrullus lanatus HOM05D004792 ORTHO05D005789 1.2e-08 63.5 127 33.9
Thhalv10026556m.g Eutrema salsugineum HOM05D004792 ORTHO05D005789 1.2e-08 63.5 128 32.8
Aa31LG2G9370 Aethionema arabicum HOM05D004792 ORTHO05D005789 1.6e-08 63.2 98 38.8
A03p52820 Brassica napus HOM05D004792 ORTHO05D005789 1.6e-08 63.2 87 42.5
C07p51260 Brassica napus HOM05D004792 ORTHO05D005789 1.6e-08 63.2 87 42.5
Zm00001eb299240 Zea mays HOM05D004792 ORTHO05D005789 1.6e-08 63.2 72 45.8
Aa31LG8G16070 Aethionema arabicum HOM05D010802 ORTHO05D012953 2.7e-08 62.4 52 53.8
DCAR_008063 Daucus carota HOM05D004792 ORTHO05D005789 2.7e-08 62.4 58 46.6
FvH4_3g04450 Fragaria vesca HOM05D004792 ORTHO05D005789 2.7e-08 62.4 59 50.8
FAN11G1697 Fragaria x ananassa HOM05D004792 ORTHO05D005789 2.7e-08 62.4 59 50.8
FAN21G2112 Fragaria x ananassa HOM05D004792 ORTHO05D005789 2.7e-08 62.4 59 50.8
FAN25G3432 Fragaria x ananassa HOM05D004792 ORTHO05D005789 2.7e-08 62.4 95 41.1
Zm00001eb032860 Zea mays HOM05D004792 ORTHO05D005789 1.0e-07 60.5 59 42.4
A08p15060 Brassica napus HOM05D004792 ORTHO05D005789 1.3e-07 60.1 127 34.6
C03p83150 Brassica napus HOM05D004792 ORTHO05D005789 1.3e-07 60.1 127 34.6
BraA08t33487Z Brassica rapa HOM05D004792 ORTHO05D005789 1.3e-07 60.1 127 34.6
BcaC01g00688 Brassica carinata HOM05D004792 ORTHO05D005789 1.7e-07 59.7 127 34.6
BolC3t20598H Brassica oleracea HOM05D004792 ORTHO05D005789 1.7e-07 59.7 127 34.6
Thhalv10022963m.g Eutrema salsugineum HOM05D010802 ORTHO05D012953 1.7e-07 59.7 75 38.7
BcaB03g11686 Brassica carinata HOM05D004792 ORTHO05D005789 2.3e-07 59.3 127 34.6
Sed0018891 Sechium edule HOM05D004792 ORTHO05D005789 2.3e-07 59.3 119 31.9
BcaC04g22871 Brassica carinata HOM05D010802 ORTHO05D012953 2.9e-07 58.9 75 40.0
BolC9t54342H Brassica oleracea HOM05D010802 ORTHO05D012953 2.9e-07 58.9 75 40.0
CDE05G0177 Ceratophyllum demersum HOM05D000873 ORTHO05D002948 2.9e-07 58.9 59 49.2
AT1G61255 Arabidopsis thaliana HOM05D004792 ORTHO05D005789 3.8e-07 58.5 86 43.0
FAN16G0443 Fragaria x ananassa HOM05D004792 ORTHO05D005789 8.6e-07 57.4 61 49.2
Rhsim13G0175100 Rhododendron simsii HOM05D004792 ORTHO05D005789 8.6e-07 57.4 74 40.5
BcaC06g36515 Brassica carinata HOM05D010802 ORTHO05D012953 3.3e-06 55.5 70 34.3
Carub.0003s3326 Capsella rubella HOM05D010802 ORTHO05D012953 9.5e-06 53.9 71 36.6


User provided reference genes

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