Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 4.4e-58 227.6 106 100.0
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 1.8e-56 222.2 106 98.1
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 5.4e-48 194.1 104 86.5
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 2.7e-47 191.8 103 86.4
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 1.3e-46 189.5 101 86.1
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 3.8e-46 188.0 104 80.8
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 1.5e-45 186.0 104 80.8
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 1.6e-44 182.6 103 81.6
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 6.1e-44 180.6 104 79.8
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 1.4e-43 179.5 101 82.2
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 3.0e-43 178.3 104 76.0
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 3.0e-43 178.3 104 76.9
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 6.8e-43 177.2 101 80.2
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 8.8e-43 176.8 104 76.0
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 1.5e-42 176.0 101 79.2
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 1.5e-42 176.0 101 79.2
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 1.5e-42 176.0 104 76.9
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 1.5e-42 176.0 104 76.0
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 9.8e-42 173.3 101 78.2
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 9.8e-42 173.3 103 77.7
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 1.7e-41 172.6 103 76.7
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 2.2e-41 172.2 101 74.3
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 2.8e-41 171.8 104 76.0
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 2.8e-41 171.8 102 77.5
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 2.8e-41 171.8 102 77.5
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 2.8e-41 171.8 101 74.3
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 3.7e-41 171.4 102 76.5
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 3.7e-41 171.4 102 76.5
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 3.7e-41 171.4 101 76.2
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.7e-41 171.4 103 76.7
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 3.7e-41 171.4 101 75.2
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 4.9e-41 171.0 100 78.0
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 4.9e-41 171.0 104 74.0
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 4.9e-41 171.0 103 75.7
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 6.3e-41 170.6 103 75.7
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 8.3e-41 170.2 101 75.2
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 1.1e-40 169.9 104 76.0
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 1.1e-40 169.9 101 76.2
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 1.1e-40 169.9 101 73.3
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 1.4e-40 169.5 106 75.5
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 1.4e-40 169.5 101 77.2
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 1.4e-40 169.5 101 77.2
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.4e-40 169.5 102 76.5
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 1.4e-40 169.5 102 76.5
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 1.4e-40 169.5 101 75.2
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 1.4e-40 169.5 103 75.7
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 1.8e-40 169.1 102 75.5
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 2.4e-40 168.7 106 75.5
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 2.4e-40 168.7 106 75.5
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 2.4e-40 168.7 101 77.2
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.4e-40 168.7 102 75.5
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 2.4e-40 168.7 104 74.0
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 3.1e-40 168.3 101 76.2
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 3.1e-40 168.3 101 76.2
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 3.1e-40 168.3 101 77.2
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 4.1e-40 167.9 101 76.2
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 4.1e-40 167.9 101 73.3
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 5.4e-40 167.5 97 76.3
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 5.4e-40 167.5 97 76.3
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 5.4e-40 167.5 101 73.3
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 5.4e-40 167.5 101 76.2
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 5.4e-40 167.5 101 75.2
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 5.4e-40 167.5 101 75.2
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 7.0e-40 167.2 101 75.2
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 7.0e-40 167.2 101 76.2
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 7.0e-40 167.2 101 76.2
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 9.2e-40 166.8 101 74.3
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 9.2e-40 166.8 101 72.3
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 9.2e-40 166.8 103 74.8
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 1.2e-39 166.4 102 73.5
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 1.6e-39 166.0 101 75.2
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 2.0e-39 165.6 101 74.3
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 2.0e-39 165.6 101 75.2
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 2.7e-39 165.2 101 75.2
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 2.7e-39 165.2 101 75.2
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 2.7e-39 165.2 101 74.3
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 2.7e-39 165.2 101 74.3
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 3.5e-39 164.9 101 74.3
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 3.5e-39 164.9 101 74.3
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 3.5e-39 164.9 101 74.3
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 3.5e-39 164.9 101 73.3
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 4.5e-39 164.5 99 76.8
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 5.9e-39 164.1 97 74.2
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 5.9e-39 164.1 101 72.3
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 7.8e-39 163.7 101 74.3
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 7.8e-39 163.7 101 74.3
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 1.0e-38 163.3 101 75.2
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 1.0e-38 163.3 101 75.2
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 1.0e-38 163.3 101 75.2
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 1.0e-38 163.3 101 75.2
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 1.0e-38 163.3 101 75.2
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 1.0e-38 163.3 101 74.3
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 1.0e-38 163.3 101 73.3
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 1.0e-38 163.3 103 70.9
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 1.0e-38 163.3 96 74.0
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 1.3e-38 162.9 101 73.3
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 1.3e-38 162.9 97 76.3
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 1.3e-38 162.9 101 74.3
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 1.3e-38 162.9 97 75.3
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 1.7e-38 162.5 97 75.3
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 1.7e-38 162.5 103 70.9
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 1.7e-38 162.5 97 73.2
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 2.3e-38 162.2 101 70.3
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 3.8e-38 161.4 99 72.7
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 3.8e-38 161.4 100 74.0
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 3.8e-38 161.4 97 75.3
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 6.6e-38 160.6 101 72.3
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 6.6e-38 160.6 101 72.3
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 6.6e-38 160.6 92 72.8
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 8.6e-38 160.2 100 73.0
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 1.1e-37 159.8 96 75.0
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 1.1e-37 159.8 96 75.0
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 1.5e-37 159.5 97 74.2
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 1.5e-37 159.5 97 75.3
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 1.5e-37 159.5 97 75.3
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 1.9e-37 159.1 101 73.3
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 3.3e-37 158.3 96 75.0
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 7.3e-37 157.1 103 69.9
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 1.2e-36 156.4 101 68.3
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 2.8e-36 155.2 103 69.9
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.8e-36 155.2 103 69.9
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.8e-36 155.2 103 69.9
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.8e-36 155.2 103 69.9
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.8e-36 155.2 103 69.9
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 3.6e-36 154.8 101 72.3
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 4.7e-36 154.5 99 68.7
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 6.1e-36 154.1 85 80.0
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 8.0e-36 153.7 99 70.7
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 8.0e-36 153.7 86 79.1
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 8.0e-36 153.7 86 79.1
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.3e-35 152.1 98 69.4
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 8.9e-35 150.2 105 64.8
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 4.4e-34 147.9 83 77.1
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 1.0e-30 136.7 94 64.9
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 1.7e-30 136.0 73 83.6
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.2e-28 129.8 93 64.5
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 2.1e-28 129.0 93 64.5
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 5.2e-27 124.4 85 65.9
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 1.2e-26 123.2 68 79.4
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 5.8e-26 120.9 81 67.9
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 1.2e-23 113.2 82 61.0
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 7.8e-23 110.5 75 60.0
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 2.5e-21 105.5 74 71.6
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 3.3e-21 105.1 79 60.8
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 2.1e-20 102.4 72 66.7
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 3.1e-19 98.6 74 62.2
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 4.0e-19 98.2 69 68.1
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 5.8e-18 94.4 52 76.9
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 2.9e-17 92.0 63 68.3
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 1.9e-16 89.4 101 46.5
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 4.1e-16 88.2 73 53.4
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 2.7e-15 85.5 70 58.6
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 3.3e-13 78.6 43 81.4
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 1.7e-09 66.2 92 37.0
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 1.4e-08 63.2 54 55.6
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 7.8e-07 57.4 37 73.0
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.0e-06 55.5 58 51.7
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 3.9e-06 55.1 37 70.3


User provided reference genes

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