Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 3.7e-175 618.2 340 100.0
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.1e-59 234.6 339 50.7
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.5e-59 234.2 339 50.7
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 2.4e-57 226.9 336 50.6
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 2.0e-56 223.8 333 49.2
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 5.9e-56 222.2 340 49.4
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 7.7e-56 221.9 335 47.5
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 4.7e-53 212.6 348 48.3
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.4e-52 211.1 344 47.4
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 1.5e-51 207.6 334 46.1
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 3.7e-50 203.0 343 45.5
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 3.7e-50 203.0 322 48.1
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.1e-49 201.4 345 46.4
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.4e-49 200.3 338 46.2
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 4.1e-49 199.5 318 45.9
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 5.9e-48 195.7 346 45.1
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 5.9e-48 195.7 337 45.4
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 5.9e-48 195.7 344 44.2
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 5.9e-48 195.7 343 44.3
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 7.7e-48 195.3 338 46.2
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 3.8e-47 193.0 340 45.3
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 5.0e-47 192.6 340 44.4
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 3.2e-46 189.9 340 43.5
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 7.2e-46 188.7 341 46.0
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 1.2e-45 188.0 318 44.3
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 8.0e-45 185.3 346 44.2
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 8.0e-45 185.3 344 42.7
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 1.0e-44 184.9 344 41.9
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.4e-44 184.5 340 44.4
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 1.8e-44 184.1 318 45.3
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 4.0e-44 183.0 346 41.9
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 5.2e-44 182.6 335 43.9
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 5.2e-44 182.6 339 45.1
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 8.8e-44 181.8 339 42.8
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 1.2e-43 181.4 340 42.6
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 2.0e-43 180.6 339 45.1
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 2.0e-43 180.6 338 45.0
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 2.0e-43 180.6 326 43.6
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 2.6e-43 180.3 332 43.7
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 2.6e-43 180.3 345 44.6
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 4.4e-43 179.5 347 43.5
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 5.7e-43 179.1 346 41.6
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 5.7e-43 179.1 344 42.7
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.3e-42 177.9 344 41.0
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 2.2e-42 177.2 294 47.3
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 2.2e-42 177.2 284 49.6
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.8e-42 176.8 344 41.0
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 3.7e-42 176.4 337 44.2
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 1.1e-41 174.9 341 42.2
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 1.4e-41 174.5 335 43.9
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 1.8e-41 174.1 337 42.7
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 4.1e-41 172.9 356 41.9
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 7.0e-41 172.2 341 44.0
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 7.0e-41 172.2 339 41.9
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 7.0e-41 172.2 340 42.6
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.2e-40 171.4 345 41.7
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 2.7e-40 170.2 358 41.9
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 2.7e-40 170.2 339 43.7
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 3.5e-40 169.9 341 42.2
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 5.9e-40 169.1 342 43.9
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 7.7e-40 168.7 339 43.4
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.7e-39 167.5 338 42.3
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 2.9e-39 166.8 340 41.5
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 2.9e-39 166.8 337 40.9
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 3.8e-39 166.4 336 42.3
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 3.8e-39 166.4 336 42.0
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 6.5e-39 165.6 320 40.0
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 1.1e-38 164.9 209 49.8
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 1.5e-38 164.5 337 42.1
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 2.5e-38 163.7 339 42.2
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 2.5e-38 163.7 344 39.2
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 2.5e-38 163.7 339 41.6
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 4.2e-38 162.9 336 43.2
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 4.2e-38 162.9 340 40.3
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 9.4e-38 161.8 336 41.4
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 1.6e-37 161.0 330 42.1
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 2.1e-37 160.6 312 42.0
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 3.6e-37 159.8 343 39.4
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 6.1e-37 159.1 340 42.6
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 8.0e-37 158.7 354 40.4
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 8.0e-37 158.7 359 39.8
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 1.0e-36 158.3 341 40.8
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 1.4e-36 157.9 335 41.2
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 1.8e-36 157.5 302 42.4
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.8e-36 157.5 346 42.2
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 4.0e-36 156.4 346 41.6
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 5.2e-36 156.0 236 46.2
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 6.8e-36 155.6 334 41.3
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 1.2e-35 154.8 260 47.3
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.5e-35 154.5 334 40.4
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 2.0e-35 154.1 337 38.6
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 2.0e-35 154.1 319 39.2
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 9.8e-35 151.8 343 39.1
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 3.1e-33 146.7 258 42.2
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 7.0e-33 145.6 311 39.5
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 2.7e-32 143.7 345 38.8
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 1.3e-31 141.4 249 42.6
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 1.3e-31 141.4 342 38.9
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 1.3e-31 141.4 319 40.4
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 1.3e-31 141.4 311 41.5
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 2.3e-31 140.6 267 39.3
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 2.9e-31 140.2 394 34.5
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 3.8e-31 139.8 406 35.2
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 5.0e-31 139.4 335 37.3
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 6.6e-31 139.0 342 35.4
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 8.6e-31 138.7 302 39.7
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 1.1e-30 138.3 341 35.8
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 1.1e-30 138.3 343 37.0
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 1.1e-30 138.3 319 40.4
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 1.1e-30 138.3 344 37.2
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 1.1e-30 138.3 337 39.8
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 1.1e-30 138.3 284 41.9
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 2.5e-30 137.1 320 37.2
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 4.3e-30 136.3 383 35.0
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 7.2e-30 135.6 320 39.7
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.8e-28 131.0 344 38.7
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 2.3e-28 130.6 342 36.3
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 3.0e-28 130.2 307 40.1
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 6.8e-28 129.0 335 34.6
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 6.8e-28 129.0 345 35.4
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 1.2e-27 128.3 304 39.1
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 1.5e-27 127.9 278 39.6
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 1.3e-26 124.8 341 36.1
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 1.3e-26 124.8 341 36.1
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 1.3e-26 124.8 341 36.1
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 1.8e-25 120.9 325 36.6
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 3.2e-25 120.2 342 34.2
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 4.1e-25 119.8 342 36.3
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 5.9e-24 115.9 374 34.8
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 8.6e-23 112.1 331 36.0
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.6e-21 107.8 350 34.6
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 2.9e-18 97.1 181 43.6
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 1.0e-15 88.6 352 29.3
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 1.3e-10 71.6 73 45.2
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 1.2e-08 65.1 215 31.2
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 1.6e-08 64.7 134 32.8
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 6.0e-08 62.8 114 36.0
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 1.3e-07 61.6 193 30.6
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 1.3e-07 61.6 165 32.1
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 1.7e-07 61.2 164 30.5
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 2.3e-07 60.8 42 69.0
PGR119G0199 Punica granatum HOM05D008415 ORTHO05D010601 2.3e-07 60.8 178 30.9
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 2.3e-07 60.8 157 31.8
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 5.1e-07 59.7 241 27.8
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 5.1e-07 59.7 165 31.5
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 6.6e-07 59.3 106 34.9
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 8.6e-07 58.9 154 31.2
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 8.6e-07 58.9 98 30.6
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 1.1e-06 58.5 145 29.0
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 1.1e-06 58.5 159 30.2
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 1.9e-06 57.8 145 27.6
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 2.5e-06 57.4 135 29.6
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 2.5e-06 57.4 115 31.3
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 4.3e-06 56.6 183 25.1
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 4.3e-06 56.6 203 26.6
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 4.3e-06 56.6 166 27.1
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 7.3e-06 55.8 165 30.9
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 7.3e-06 55.8 72 34.7
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 9.5e-06 55.5 197 25.9
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 9.5e-06 55.5 193 30.6


User provided reference genes

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