Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g9610 Utricularia gibba HOM05D005804 ORTHO05D006849 7.7e-280 966.5 473 100.0
Migut.O00254 Erythranthe guttata HOM05D005804 ORTHO05D006849 3.9e-90 336.3 416 46.6
Nitab4.5_0010950g0010 Nicotiana tabacum HOM05D005804 ORTHO05D006849 5.3e-87 325.9 408 43.9
Oeu058729.2 Olea europaea HOM05D005804 ORTHO05D006849 5.4e-84 315.8 466 40.3
HanXRQChr13g0408711 Helianthus annuus HOM05D005804 ORTHO05D006849 3.5e-83 313.2 409 42.5
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 2.3e-82 310.5 406 43.3
Peaxi162Scf00171g00421 Petunia axillaris HOM05D005804 ORTHO05D006849 9.6e-81 305.1 432 39.8
Sopen03g029080 Solanum pennellii HOM05D005804 ORTHO05D006849 3.7e-80 303.1 408 40.7
PGSC0003DMG400025629 Solanum tuberosum HOM05D005804 ORTHO05D006849 1.1e-79 301.6 407 40.5
Solyc03g098330.2 Solanum lycopersicum HOM05D005804 ORTHO05D006849 1.4e-79 301.2 408 40.9
Cc04_g08810 Coffea canephora HOM05D005804 ORTHO05D006849 3.1e-79 300.1 436 42.7
SGA_v2.0_scaffold164G38120 Striga asiatica HOM05D005804 ORTHO05D006849 9.0e-79 298.5 450 41.8
SalBow8G2935 Salvia bowleyana HOM05D005804 ORTHO05D006849 1.2e-78 298.1 431 41.3
FAN04G2797 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.6e-78 297.0 440 40.7
QL10p002869 Quercus lobata HOM05D005804 ORTHO05D006849 5.8e-78 295.8 425 41.2
FAN08G1998 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.1e-76 291.6 435 39.5
Hma1.2p1_0014F.1_g009390 Hydrangea macrophylla HOM05D005804 ORTHO05D006849 1.1e-76 291.6 423 39.2
Rhsim12G0175100 Rhododendron simsii HOM05D005804 ORTHO05D006849 1.1e-76 291.6 460 39.3
TWI23G1188 Tripterygium wilfordii HOM05D005804 ORTHO05D006849 3.2e-76 290.0 430 40.2
FAN13G2030 Fragaria x ananassa HOM05D005804 ORTHO05D006849 3.5e-75 286.6 427 39.3
arahy.Tifrunner.gnm1.ann1.489AYV Arachis hypogaea HOM05D005804 ORTHO05D006849 4.6e-75 286.2 427 40.5
FvH4_5g08360 Fragaria vesca HOM05D005804 ORTHO05D006849 1.8e-74 284.3 420 40.0
Lsat_1_v5_gn_1_33221 Lactuca sativa HOM05D005804 ORTHO05D006849 2.3e-74 283.9 424 41.7
Lalb_Chr11g0069551 Lupinus albus HOM05D005804 ORTHO05D006849 2.3e-74 283.9 429 40.1
arahy.Tifrunner.gnm1.ann1.Y2QIS7 Arachis hypogaea HOM05D005804 ORTHO05D006849 3.9e-74 283.1 415 41.2
COL.COLO4_28132 Corchorus olitorius HOM05D005804 ORTHO05D006849 8.7e-74 282.0 419 39.4
FAN18G4115 Fragaria x ananassa HOM05D005804 ORTHO05D006849 3.3e-73 280.0 415 40.0
Thecc.03G129500 Theobroma cacao HOM05D005804 ORTHO05D006849 5.6e-73 279.3 458 38.0
Cfa018793 Carpinus fangiana HOM05D005804 ORTHO05D006849 7.4e-73 278.9 441 38.3
TPR.G14211 Trifolium pratense HOM05D005804 ORTHO05D006849 1.3e-72 278.1 443 37.5
CiPaw.11G006800 Carya illinoinensis HOM05D005804 ORTHO05D006849 1.6e-72 277.7 443 39.3
Dinv23150 Davidia involucrata HOM05D005804 ORTHO05D006849 2.8e-72 276.9 427 39.8
DCAR_007491 Daucus carota HOM05D005804 ORTHO05D006849 2.4e-71 273.9 438 38.6
arahy.Tifrunner.gnm1.ann1.PR501J Arachis hypogaea HOM05D005804 ORTHO05D006849 3.1e-71 273.5 417 38.8
Lj1g0008882 Lotus japonicus HOM05D005804 ORTHO05D006849 3.1e-71 273.5 435 39.3
Haze_07141 Corylus avellana HOM05D005804 ORTHO05D006849 5.3e-71 272.7 448 37.3
TAR629G0711 Trochodendron aralioides HOM05D005804 ORTHO05D006849 6.9e-71 272.3 426 40.6
GSVIVG01008547001 Vitis vinifera HOM05D005804 ORTHO05D006849 6.9e-71 272.3 451 38.6
AT4G24900 Arabidopsis thaliana HOM05D005804 ORTHO05D006849 7.6e-70 268.9 425 39.1
Psat5g051400 Pisum sativum HOM05D005804 ORTHO05D006849 7.6e-70 268.9 440 37.7
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 4.9e-69 266.2 412 39.8
MD14G1156600 Malus domestica HOM05D005804 ORTHO05D006849 6.5e-69 265.8 437 38.7
Aqoxy5G03360 Aquilegia oxysepala HOM05D005804 ORTHO05D006849 2.5e-68 263.8 426 38.5
Medtr3g099220 Medicago truncatula HOM05D005804 ORTHO05D006849 3.2e-68 263.5 424 37.7
Ca_16047_v3 Cicer arietinum L. HOM05D005804 ORTHO05D006849 7.1e-68 262.3 437 36.6
Medtr2g045240 Medicago truncatula HOM05D005804 ORTHO05D006849 7.1e-68 262.3 422 37.9
Medtr2g045245 Medicago truncatula HOM05D005804 ORTHO05D006849 7.1e-68 262.3 422 37.9
Prupe.5G150700 Prunus persica HOM05D005804 ORTHO05D006849 7.1e-68 262.3 436 38.1
arahy.Tifrunner.gnm1.ann1.I073XK Arachis hypogaea HOM05D005804 ORTHO05D006849 9.3e-68 261.9 416 39.7
Duzib205G0351 Durio zibethinus HOM05D005804 ORTHO05D006849 1.2e-67 261.5 437 36.6
AL7G28300 Arabidopsis lyrata HOM05D005804 ORTHO05D006849 1.0e-66 258.5 432 39.1
Gorai.001G058800 Gossypium raimondii HOM05D005804 ORTHO05D006849 1.8e-66 257.7 440 37.3
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 3.9e-66 256.5 389 39.8
MELO3C002363.2 Cucumis melo HOM05D005804 ORTHO05D006849 1.1e-65 255.0 417 37.6
Ciclev10031832m.g Citrus clementina HOM05D005804 ORTHO05D006849 2.5e-65 253.8 409 36.4
THA.LOC104825017 Tarenaya hassleriana HOM05D005804 ORTHO05D006849 2.5e-65 253.8 436 38.1
VMungo1309G0122 Vigna mungo HOM05D005804 ORTHO05D006849 3.3e-65 253.4 426 37.3
Cpa.g.sc13.112 Carica papaya HOM05D005804 ORTHO05D006849 2.8e-64 250.4 422 37.4
Hund02443 Selenicereus undatus HOM05D005804 ORTHO05D006849 4.8e-64 249.6 439 35.8
MBI11_g05331_MAGBIO Magnolia biondii HOM05D005804 ORTHO05D006849 1.8e-63 247.7 412 36.4
PSO478G1623 Papaver somniferum HOM05D005804 ORTHO05D006849 6.9e-63 245.7 448 35.9
CsaV3_1G009670 Cucumis sativus L. HOM05D005804 ORTHO05D006849 9.0e-63 245.4 437 36.6
Sc22g0003840 Simmondsia chinensis HOM05D005804 ORTHO05D006849 2.0e-62 244.2 441 37.0
ClCG03G003790 Citrullus lanatus HOM05D005804 ORTHO05D006849 1.3e-61 241.5 445 36.9
Atru.chr12.1219 Acer truncatum HOM05D005804 ORTHO05D006849 1.9e-60 237.7 425 35.1
Sp7g22880 Schrenkiella parvula HOM05D005804 ORTHO05D006849 9.4e-60 235.3 418 36.8
Nitab4.5_0001180g0250 Nicotiana tabacum HOM05D005804 ORTHO05D006849 5.1e-58 229.6 313 42.8
Lj9A479T55 Lonicera japonica HOM05D005804 ORTHO05D006849 5.7e-57 226.1 402 36.3
BcaNung06008 Brassica carinata HOM05D005804 ORTHO05D006849 1.3e-56 224.9 429 35.9
Ah.02g114880 Amaranthus hybridus HOM05D005804 ORTHO05D006849 3.7e-56 223.4 423 34.5
Thhalv10025155m.g Eutrema salsugineum HOM05D005804 ORTHO05D006849 4.8e-56 223.0 427 33.7
Aa31LG7G10880 Aethionema arabicum HOM05D005804 ORTHO05D006849 8.2e-56 222.2 430 35.6
Atru.chr6.1796 Acer truncatum HOM05D005804 ORTHO05D006849 3.1e-55 220.3 410 35.6
BraA01t01555Z Brassica rapa HOM05D005804 ORTHO05D006849 6.9e-55 219.2 431 34.1
A01p16190 Brassica napus HOM05D005804 ORTHO05D006849 1.5e-54 218.0 431 34.1
MD06G1141400 Malus domestica HOM05D005804 ORTHO05D006849 1.3e-53 214.9 385 36.9
ECA247G1629 Erigeron canadensis HOM05D005804 ORTHO05D006849 2.2e-53 214.2 311 40.5
SHI10578 Sapria himalayana HOM05D005804 ORTHO05D006849 3.8e-53 213.4 419 34.8
BcaC09g52237 Brassica carinata HOM05D005804 ORTHO05D006849 5.0e-53 213.0 429 35.2
BolC1t01947H Brassica oleracea HOM05D005804 ORTHO05D006849 1.1e-52 211.8 430 34.9
EL10Ac5g11407 Beta vulgaris HOM05D005804 ORTHO05D006849 5.5e-52 209.5 529 29.9
C01p20180 Brassica napus HOM05D005804 ORTHO05D006849 7.2e-52 209.1 427 34.7
Glyma.06G170000 Glycine max HOM05D005804 ORTHO05D006849 2.7e-51 207.2 403 33.5
HPP92_013611 Vanilla planifolia HOM05D005804 ORTHO05D006849 7.9e-51 205.7 422 33.4
AUR62029607 Chenopodium quinoa HOM05D005804 ORTHO05D006849 5.1e-50 203.0 401 34.4
Sed0001636 Sechium edule HOM05D005804 ORTHO05D006849 2.0e-46 191.0 411 33.3
SEGI_29979 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 1.3e-45 188.3 445 30.1
Zm00001eb102430 Zea mays HOM05D005804 ORTHO05D006849 1.5e-41 174.9 426 31.0
Manes.14G051101 Manihot esculenta HOM05D005804 ORTHO05D006849 7.4e-41 172.6 216 42.1
Potri.012G098000 Populus trichocarpa HOM05D005804 ORTHO05D006849 1.1e-39 168.7 273 38.8
Eucgr.K02724 Eucalyptus grandis HOM05D005804 ORTHO05D006849 1.4e-39 168.3 311 37.0
CSS0001147 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 5.9e-38 162.9 201 41.8
Actinidia08874 Actinidia chinensis HOM05D005804 ORTHO05D006849 1.5e-36 158.3 272 36.4
RcHm_v2.0_Chr7g0190081 Rosa chinensis HOM05D005804 ORTHO05D006849 2.1e-35 154.5 206 42.7
Lalb_Chr08g0237201 Lupinus albus HOM05D005804 ORTHO05D006849 9.7e-33 145.6 165 44.8
Medtr2g045235 Medicago truncatula HOM05D005804 ORTHO05D006849 3.7e-32 143.7 156 45.5
RcHm_v2.0_Chr7g0190091 Rosa chinensis HOM05D005804 ORTHO05D006849 8.3e-32 142.5 239 36.8
AagrBONN_evm.TU.Sc2ySwM_362.247 Anthoceros agrestis HOM05D005804 ORTHO05D006849 2.4e-31 141.0 414 30.0
Manes.14G051001 Manihot esculenta HOM05D005804 ORTHO05D006849 1.2e-30 138.7 157 46.5
CSS0012660 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 5.9e-30 136.3 133 47.4
CARHR232300 Cardamine hirsuta HOM05D005804 ORTHO05D006849 1.0e-29 135.6 157 46.5
Gohir.A07G051132 Gossypium hirsutum HOM05D005804 ORTHO05D006849 5.0e-29 133.3 174 42.0
CDE05G3468 Ceratophyllum demersum HOM05D005804 ORTHO05D006849 8.5e-29 132.5 294 33.7
Carub.0007s1616 Capsella rubella HOM05D005804 ORTHO05D006849 1.9e-28 131.3 187 41.2
Carub.0007s1617 Capsella rubella HOM05D005804 ORTHO05D006849 4.2e-28 130.2 170 40.0
vmacro16720 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 4.2e-28 130.2 138 45.7
Gohir.D07G055466 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.6e-27 128.3 149 44.3
Gohir.A07G051066 Gossypium hirsutum HOM05D005804 ORTHO05D006849 2.1e-27 127.9 150 46.0
Gohir.D07G055532 Gossypium hirsutum HOM05D005804 ORTHO05D006849 2.1e-27 127.9 170 41.2
Phvul.009G166301 Phaseolus vulgaris HOM05D005804 ORTHO05D006849 8.8e-26 122.5 159 39.6
Os09g0506900 Oryza sativa ssp. japonica HOM05D005804 ORTHO05D006849 2.0e-25 121.3 186 36.0
Dinv11175 Davidia involucrata HOM05D005804 ORTHO05D006849 9.8e-25 119.0 131 45.0
Oeu016044.4 Olea europaea HOM05D005804 ORTHO05D006849 2.2e-24 117.9 158 41.8
SMO133G0032 Selaginella moellendorffii HOM05D005804 ORTHO05D006849 3.7e-24 117.1 404 28.2
SGA_v2.0_scaffold110G31174 Striga asiatica HOM05D052586 ORTHO05D006849 6.3e-24 116.3 119 49.6
ATR0178G002 Amborella trichopoda HOM05D005804 ORTHO05D006849 1.8e-23 114.8 274 31.4
Dinv11177 Davidia involucrata HOM05D005804 ORTHO05D006849 2.4e-23 114.4 262 32.1
ATR0178G019 Amborella trichopoda HOM05D005804 ORTHO05D006849 8.6e-21 105.9 154 39.6
SEGI_03962 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 2.5e-20 104.4 165 37.0
Lalb_Chr08g0237181 Lupinus albus HOM05D005804 ORTHO05D006849 4.2e-20 103.6 132 38.6
Zm00001eb317740 Zea mays HOM05D005804 ORTHO05D006849 1.6e-19 101.7 100 50.0
AUR62034829 Chenopodium quinoa HOM05D005804 ORTHO05D006849 1.4e-18 98.6 222 32.9
AUR62034830 Chenopodium quinoa HOM05D005804 ORTHO05D006849 1.4e-18 98.6 222 32.9
Mapoly0096s0043 Marchantia polymorpha HOM05D005804 ORTHO05D006849 2.3e-18 97.8 140 41.4
vmacro16719 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 2.3e-18 97.8 121 41.3
SEGI_07598 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 1.3e-16 92.0 132 34.8
SalBow2G1912 Salvia bowleyana HOM05D000011 ORTHO05D000018 9.2e-15 85.9 82 52.4
Pp3c6_21480 Physcomitrium patens HOM05D005804 ORTHO05D006849 2.7e-14 84.3 146 37.0
Mapoly0096s0044 Marchantia polymorpha HOM05D005804 ORTHO05D006849 5.0e-13 80.1 125 32.0
CBR_g12751 Chara braunii HOM05D005804 ORTHO05D006849 6.1e-11 73.2 166 30.7
CSS0025658 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 8.9e-10 69.3 129 34.1
SalBow6G3535 Salvia bowleyana HOM05D000510 ORTHO05D002064 2.6e-09 67.8 40 67.5
SalBow6G5520 Salvia bowleyana HOM05D000510 ORTHO05D002064 2.6e-09 67.8 40 67.5
Potri.015G096700 Populus trichocarpa HOM05D005804 ORTHO05D006849 2.2e-08 64.7 148 29.7
MSTRG.17004 Avicennia marina HOM05D000510 ORTHO05D002064 3.7e-08 63.9 65 49.2
CiPaw.12G043400 Carya illinoinensis HOM05D005804 ORTHO05D006849 1.4e-07 62.0 68 45.6
CSS0044462 Camellia sinensis var. sinensis HOM05D000510 ORTHO05D002064 4.1e-07 60.5 91 37.4
Cc04_g14690 Coffea canephora HOM05D000510 ORTHO05D002064 4.1e-07 60.5 49 57.1
Migut.B01257 Erythranthe guttata HOM05D000510 ORTHO05D002064 4.1e-07 60.5 36 66.7
DCAR_022367 Daucus carota HOM05D000510 ORTHO05D002064 9.2e-07 59.3 39 61.5
Nitab4.5_0011011g0020 Nicotiana tabacum HOM05D000510 ORTHO05D002064 9.2e-07 59.3 43 55.8
Peaxi162Scf01108g00121 Petunia axillaris HOM05D000510 ORTHO05D002064 1.2e-06 58.9 39 61.5
Lj9C642T9 Lonicera japonica HOM05D000510 ORTHO05D002064 1.6e-06 58.5 96 37.5
Oeu049470.1 Olea europaea HOM05D000510 ORTHO05D002064 2.0e-06 58.2 39 61.5
Nitab4.5_0006695g0010 Nicotiana tabacum HOM05D000510 ORTHO05D002064 2.7e-06 57.8 50 46.0
Solyc01g088050.3 Solanum lycopersicum HOM05D000510 ORTHO05D002064 3.5e-06 57.4 39 59.0
PGSC0003DMG400006830 Solanum tuberosum HOM05D000510 ORTHO05D002064 3.5e-06 57.4 39 59.0


User provided reference genes

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