Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 8.1e-134 480.3 229 100.0
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 3.8e-99 365.2 228 74.6
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 5.5e-98 361.3 226 74.3
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 9.3e-98 360.5 226 74.8
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 1.0e-96 357.1 226 72.6
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 1.9e-95 352.8 223 73.1
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 3.3e-95 352.1 231 71.4
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 4.3e-95 351.7 223 72.2
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 4.3e-95 351.7 226 72.6
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 4.3e-95 351.7 226 72.6
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 2.2e-94 349.4 236 69.9
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 3.7e-94 348.6 235 70.6
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 1.8e-93 346.3 233 70.4
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 4.1e-93 345.1 232 69.8
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 4.1e-93 345.1 223 71.7
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 4.1e-93 345.1 235 68.9
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 5.3e-93 344.7 228 69.3
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 5.3e-93 344.7 228 71.5
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 5.3e-93 344.7 226 71.7
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 6.9e-93 344.4 243 66.3
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 6.9e-93 344.4 243 66.3
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 6.9e-93 344.4 226 70.8
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 1.2e-92 343.6 226 71.2
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 1.2e-92 343.6 224 70.5
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 3.4e-92 342.0 235 68.1
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 7.7e-92 340.9 231 68.4
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.0e-91 340.5 231 68.4
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 1.3e-91 340.1 231 66.7
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 1.3e-91 340.1 235 67.7
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 1.3e-91 340.1 239 66.9
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 1.7e-91 339.7 227 68.7
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 1.7e-91 339.7 227 69.2
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 1.7e-91 339.7 230 69.1
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 2.9e-91 339.0 239 66.5
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 2.9e-91 339.0 230 68.7
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 3.8e-91 338.6 223 69.1
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 3.8e-91 338.6 230 68.3
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 5.0e-91 338.2 231 68.8
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 5.0e-91 338.2 235 67.2
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 5.0e-91 338.2 230 68.7
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 6.5e-91 337.8 235 67.2
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 8.5e-91 337.4 230 67.8
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 8.5e-91 337.4 227 69.2
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 1.4e-90 336.7 227 68.7
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 1.9e-90 336.3 233 68.7
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 2.5e-90 335.9 227 67.0
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 4.2e-90 335.1 232 67.7
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 5.5e-90 334.7 232 67.7
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 5.5e-90 334.7 224 68.8
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 9.4e-90 334.0 239 64.9
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 1.2e-89 333.6 225 68.4
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.2e-89 333.6 226 69.5
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 1.2e-89 333.6 245 64.9
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.6e-89 333.2 226 69.5
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.6e-89 333.2 226 69.5
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 1.6e-89 333.2 226 68.6
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.6e-89 332.0 226 69.0
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 4.6e-89 331.6 239 64.4
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 7.9e-89 330.9 236 65.3
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 1.8e-88 329.7 226 68.6
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 3.0e-88 328.9 227 63.4
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 5.1e-88 328.2 231 66.2
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 6.7e-88 327.8 228 67.5
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 6.7e-88 327.8 226 67.7
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 1.5e-87 326.6 232 65.5
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 2.5e-87 325.9 232 66.4
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 4.3e-87 325.1 232 65.1
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 7.4e-87 324.3 231 66.2
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.3e-86 323.6 228 65.4
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.3e-86 323.6 228 65.4
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 1.3e-86 323.6 279 57.0
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 1.7e-86 323.2 232 65.1
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 2.8e-86 322.4 228 65.4
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.7e-86 322.0 232 65.5
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 4.8e-86 321.6 227 63.9
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 6.3e-86 321.2 231 65.4
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 8.2e-86 320.9 239 62.3
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 8.2e-86 320.9 232 64.2
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 1.4e-85 320.1 227 65.2
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 3.1e-85 318.9 231 64.1
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 5.3e-85 318.2 227 63.4
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 6.9e-85 317.8 224 65.6
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 1.5e-84 316.6 223 66.4
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 2.0e-84 316.2 232 63.4
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 3.4e-84 315.5 227 63.4
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 3.4e-84 315.5 216 68.1
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 7.7e-84 314.3 223 62.8
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 7.7e-84 314.3 223 62.8
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.7e-83 313.2 232 62.9
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 3.8e-83 312.0 223 61.9
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 3.8e-83 312.0 223 61.9
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 3.8e-83 312.0 232 62.1
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 1.1e-82 310.5 233 63.1
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 1.9e-82 309.7 235 61.3
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 9.4e-82 307.4 227 62.1
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 9.4e-82 307.4 227 62.1
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 9.4e-82 307.4 232 62.1
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 1.6e-81 306.6 221 65.2
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 3.6e-81 305.4 223 60.1
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 6.1e-81 304.7 223 60.5
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 1.0e-80 303.9 223 60.5
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 1.8e-80 303.1 227 61.2
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 1.8e-80 303.1 223 63.7
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 2.3e-80 302.8 227 61.2
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 1.4e-77 293.5 223 61.4
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 7.0e-77 291.2 247 54.7
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 6.7e-72 274.6 224 55.4
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 4.8e-70 268.5 229 52.8
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 8.2e-70 267.7 232 55.6
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 2.4e-69 266.2 286 49.0
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 2.0e-68 263.1 227 55.5
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 2.6e-68 262.7 247 52.2
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 1.6e-65 253.4 159 71.7
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 4.7e-65 251.9 252 48.8
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 1.2e-63 247.3 159 70.4
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 9.4e-58 227.6 154 66.2
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 1.6e-52 210.3 159 58.5
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 6.8e-48 194.9 227 39.6
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 8.9e-48 194.5 121 74.4
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 1.2e-44 184.1 178 47.8
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 8.6e-43 177.9 135 57.8
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 1.7e-38 163.7 108 69.4
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 2.5e-34 149.8 108 63.0
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 1.1e-32 144.4 238 34.9
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 7.5e-31 138.3 91 69.2
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 7.5e-31 138.3 91 69.2
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.7e-30 136.0 89 71.9
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.4e-30 135.2 89 69.7
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 9.2e-29 131.3 91 69.2
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.5e-28 129.4 91 67.0
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 8.6e-27 124.8 75 74.7
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.2e-25 120.9 228 29.8
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 1.2e-25 120.9 75 72.0
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 2.8e-25 119.8 75 72.0
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 6.2e-25 118.6 75 73.3
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.5e-23 114.0 75 66.7
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 3.2e-21 106.3 75 66.7
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 3.2e-21 106.3 75 66.7
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 3.2e-21 106.3 75 66.7
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 4.1e-21 105.9 72 69.4
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 6.0e-20 102.1 66 69.7
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.5e-18 96.7 65 61.5
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 3.6e-17 92.8 87 52.9


User provided reference genes

Program Settings