Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g9474 Utricularia gibba HOM05D006636 ORTHO05D008266 1.9e-66 255.8 133 100.0
Migut.N00229 Erythranthe guttata HOM05D006636 ORTHO05D008266 1.3e-14 83.6 43 90.7
Cc03_g04590 Coffea canephora HOM05D006636 ORTHO05D008266 1.1e-13 80.5 43 86.0
SalBow2G2841 Salvia bowleyana HOM05D006636 ORTHO05D008266 1.8e-13 79.7 43 86.0
CSS0008233 Camellia sinensis var. sinensis HOM05D006636 ORTHO05D008266 2.4e-13 79.3 43 83.7
CSS0036965 Camellia sinensis var. sinensis HOM05D006636 ORTHO05D008266 2.4e-13 79.3 43 83.7
SalBow4G0852 Salvia bowleyana HOM05D006636 ORTHO05D008266 3.2e-13 79.0 44 84.1
Dinv44607 Davidia involucrata HOM05D006636 ORTHO05D008266 5.4e-13 78.2 43 81.4
vmacro15399 Vaccinium macrocarpon HOM05D006636 ORTHO05D008266 5.4e-13 78.2 43 81.4
Dinv14071 Davidia involucrata HOM05D006636 ORTHO05D008266 7.0e-13 77.8 43 81.4
Lsat_1_v5_gn_3_124880 Lactuca sativa HOM05D006636 ORTHO05D008266 7.0e-13 77.8 42 85.7
ECA240G3921 Erigeron canadensis HOM05D006636 ORTHO05D008266 9.2e-13 77.4 42 85.7
CSS0035223 Camellia sinensis var. sinensis HOM05D006636 ORTHO05D008266 1.6e-12 76.6 43 74.4
MSTRG.24709 Avicennia marina HOM05D006636 ORTHO05D008266 3.5e-12 75.5 43 81.4
Potri.008G160101 Populus trichocarpa HOM05D006636 ORTHO05D008266 3.5e-12 75.5 58 69.0
Sabra10G0063800 Salix brachista HOM05D006636 ORTHO05D008266 3.5e-12 75.5 44 79.5
QL06p014938 Quercus lobata HOM05D006636 ORTHO05D008266 4.5e-12 75.1 43 83.7
arahy.Tifrunner.gnm1.ann1.G1PS4Z Arachis hypogaea HOM05D006636 ORTHO05D008266 5.9e-12 74.7 43 81.4
Potri.010G079100 Populus trichocarpa HOM05D006636 ORTHO05D008266 5.9e-12 74.7 58 67.2
Gohir.A02G035000 Gossypium hirsutum HOM05D006636 ORTHO05D008266 7.8e-12 74.3 43 83.7
Gohir.D02G041800 Gossypium hirsutum HOM05D006636 ORTHO05D008266 7.8e-12 74.3 43 83.7
Gohir.D10G147800 Gossypium hirsutum HOM05D006636 ORTHO05D008266 7.8e-12 74.3 43 83.7
Gorai.005G046200 Gossypium raimondii HOM05D006636 ORTHO05D008266 7.8e-12 74.3 43 83.7
Gorai.011G165000 Gossypium raimondii HOM05D006636 ORTHO05D008266 7.8e-12 74.3 43 83.7
Peaxi162Scf00788g00311 Petunia axillaris HOM05D006636 ORTHO05D008266 7.8e-12 74.3 43 79.1
Lsat_1_v5_gn_6_37261 Lactuca sativa HOM05D006636 ORTHO05D008266 1.0e-11 73.9 42 81.0
Manes.03G170500 Manihot esculenta HOM05D006636 ORTHO05D008266 1.0e-11 73.9 43 79.1
Actinidia40100 Actinidia chinensis HOM05D006636 ORTHO05D008266 1.3e-11 73.6 43 76.7
CiPaw.02G118100 Carya illinoinensis HOM05D006636 ORTHO05D008266 1.3e-11 73.6 43 76.7
Oeu029765.1 Olea europaea HOM05D006636 ORTHO05D008266 1.3e-11 73.6 43 76.7
CiPaw.01G192900 Carya illinoinensis HOM05D006636 ORTHO05D008266 1.7e-11 73.2 43 79.1
Haze_11264 Corylus avellana HOM05D006636 ORTHO05D008266 2.3e-11 72.8 51 66.7
Duzib151G1121 Durio zibethinus HOM05D006636 ORTHO05D008266 2.3e-11 72.8 43 81.4
COL.COLO4_15761 Corchorus olitorius HOM05D006636 ORTHO05D008266 3.9e-11 72.0 58 62.1
Lalb_Chr03g0037601 Lupinus albus HOM05D006636 ORTHO05D008266 3.9e-11 72.0 43 76.7
Manes.15G035100 Manihot esculenta HOM05D006636 ORTHO05D008266 3.9e-11 72.0 43 79.1
PGSC0003DMG400006103 Solanum tuberosum HOM05D006636 ORTHO05D008266 3.9e-11 72.0 69 56.5
Ah.03g134670 Amaranthus hybridus HOM05D006636 ORTHO05D008266 5.0e-11 71.6 61 60.7
Ciclev10006361m.g Citrus clementina HOM05D006636 ORTHO05D008266 5.0e-11 71.6 43 74.4
Aqoxy5G00371 Aquilegia oxysepala HOM05D006636 ORTHO05D008266 6.6e-11 71.2 42 76.2
Thecc.04G243200 Theobroma cacao HOM05D006636 ORTHO05D008266 6.6e-11 71.2 43 79.1
Ah.02g129360 Amaranthus hybridus HOM05D006636 ORTHO05D008266 8.6e-11 70.9 61 60.7
Solyc09g083070.3 Solanum lycopersicum HOM05D006636 ORTHO05D008266 8.6e-11 70.9 43 76.7
Sopen09g031950 Solanum pennellii HOM05D006636 ORTHO05D008266 8.6e-11 70.9 43 76.7
PSO210G2897 Papaver somniferum HOM05D006636 ORTHO05D008266 1.1e-10 70.5 43 74.4
EL10Ac6g13264 Beta vulgaris HOM05D006636 ORTHO05D008266 1.5e-10 70.1 61 59.0
Cfa008404 Carpinus fangiana HOM05D006636 ORTHO05D008266 1.5e-10 70.1 43 74.4
Eucgr.H03183 Eucalyptus grandis HOM05D006636 ORTHO05D008266 1.5e-10 70.1 42 76.2
Gohir.A10G118900 Gossypium hirsutum HOM05D006636 ORTHO05D008266 1.5e-10 70.1 43 79.1
Nitab4.5_0001787g0030 Nicotiana tabacum HOM05D006636 ORTHO05D008266 1.5e-10 70.1 43 74.4
Nitab4.5_0001856g0080 Nicotiana tabacum HOM05D006636 ORTHO05D008266 1.5e-10 70.1 43 74.4
Atru.chr4.2290 Acer truncatum HOM05D006636 ORTHO05D008266 1.9e-10 69.7 43 74.4
CAN.G749.28 Capsicum annuum HOM05D006636 ORTHO05D008266 2.5e-10 69.3 43 74.4
PGR142G1808 Punica granatum HOM05D006636 ORTHO05D008266 3.3e-10 68.9 43 72.1
ClCG06G006590 Citrullus lanatus HOM05D006636 ORTHO05D008266 4.3e-10 68.6 42 73.8
Duzib212G0484 Durio zibethinus HOM05D006636 ORTHO05D008266 4.3e-10 68.6 43 79.1
Prupe.1G025800 Prunus persica HOM05D006636 ORTHO05D008266 4.3e-10 68.6 43 72.1
BcaB04g18245 Brassica carinata HOM05D006636 ORTHO05D008266 5.6e-10 68.2 43 69.8
A08p11260 Brassica napus HOM05D006636 ORTHO05D008266 5.6e-10 68.2 43 69.8
BraA08t33120Z Brassica rapa HOM05D006636 ORTHO05D008266 5.6e-10 68.2 43 69.8
AUR62032843 Chenopodium quinoa HOM05D006636 ORTHO05D008266 5.6e-10 68.2 61 57.4
MD16G1204700 Malus domestica HOM05D006636 ORTHO05D008266 5.6e-10 68.2 43 72.1
Hund25206 Selenicereus undatus HOM05D006636 ORTHO05D008266 5.6e-10 68.2 61 57.4
Oeu032618.1 Olea europaea HOM05D006636 ORTHO05D008266 7.3e-10 67.8 43 72.1
PSO832G4373 Papaver somniferum HOM05D006636 ORTHO05D008266 7.3e-10 67.8 43 72.1
Phvul.006G006400 Phaseolus vulgaris HOM05D006636 ORTHO05D008266 7.3e-10 67.8 43 74.4
Phvul.010G060600 Phaseolus vulgaris HOM05D006636 ORTHO05D008266 7.3e-10 67.8 43 74.4
MD13G1203300 Malus domestica HOM05D006636 ORTHO05D008266 9.5e-10 67.4 43 69.8
RcHm_v2.0_Chr4g0388961 Rosa chinensis HOM05D006636 ORTHO05D008266 9.5e-10 67.4 43 72.1
Hund05854 Selenicereus undatus HOM05D006636 ORTHO05D008266 9.5e-10 67.4 61 57.4
BcaC07g37832 Brassica carinata HOM05D006636 ORTHO05D008266 1.2e-09 67.0 43 69.8
BolC8t48218H Brassica oleracea HOM05D006636 ORTHO05D008266 1.2e-09 67.0 43 69.8
CANSAT80G2460 Cannabis sativa HOM05D006636 ORTHO05D008266 1.2e-09 67.0 43 67.4
Thhalv10026714m.g Eutrema salsugineum HOM05D006636 ORTHO05D008266 1.2e-09 67.0 43 67.4
Sp7g12710 Schrenkiella parvula HOM05D006636 ORTHO05D008266 1.2e-09 67.0 43 67.4
Sc22g0003980 Simmondsia chinensis HOM05D006636 ORTHO05D008266 1.2e-09 67.0 61 59.0
THA.LOC104808586 Tarenaya hassleriana HOM05D006636 ORTHO05D008266 1.2e-09 67.0 43 69.8
Glyma.02G001300 Glycine max HOM05D006636 ORTHO05D008266 1.6e-09 66.6 43 72.1
AUR62005850 Chenopodium quinoa HOM05D006636 ORTHO05D008266 2.1e-09 66.2 61 55.7
FAN12G3161 Fragaria x ananassa HOM05D006636 ORTHO05D008266 2.1e-09 66.2 43 72.1
FAN22G1829 Fragaria x ananassa HOM05D006636 ORTHO05D008266 2.1e-09 66.2 43 72.1
Sed0018024 Sechium edule HOM05D006636 ORTHO05D008266 2.1e-09 66.2 42 71.4
CARHR220860 Cardamine hirsuta HOM05D006636 ORTHO05D008266 2.8e-09 65.9 43 69.8
Aa31LG9G2720 Aethionema arabicum HOM05D006636 ORTHO05D008266 3.6e-09 65.5 43 67.4
AL1G61120 Arabidopsis lyrata HOM05D006636 ORTHO05D008266 3.6e-09 65.5 43 67.4
CARHR043050 Cardamine hirsuta HOM05D006636 ORTHO05D008266 3.6e-09 65.5 43 67.4
Thhalv10011910m.g Eutrema salsugineum HOM05D006636 ORTHO05D008266 3.6e-09 65.5 43 65.1
Nn3g19491 Nelumbo nucifera HOM05D006636 ORTHO05D008266 4.7e-09 65.1 43 67.4
AL7G41500 Arabidopsis lyrata HOM05D006636 ORTHO05D008266 6.1e-09 64.7 43 69.8
AT4G14615 Arabidopsis thaliana HOM05D006636 ORTHO05D008266 6.1e-09 64.7 43 69.8
TWI53G1752 Tripterygium wilfordii HOM05D006636 ORTHO05D008266 6.1e-09 64.7 43 67.4
TWI53G1902 Tripterygium wilfordii HOM05D006636 ORTHO05D008266 6.1e-09 64.7 43 67.4
ATR0665G452 Amborella trichopoda HOM05D006636 ORTHO05D008266 1.0e-08 63.9 43 69.8
AT1G52825 Arabidopsis thaliana HOM05D006636 ORTHO05D008266 1.0e-08 63.9 43 65.1
Carub.0007s2759 Capsella rubella HOM05D006636 ORTHO05D008266 1.0e-08 63.9 43 69.8
CDE07G1452 Ceratophyllum demersum HOM05D006636 ORTHO05D008266 1.8e-08 63.2 43 62.8
SHI00567 Sapria himalayana HOM05D006636 ORTHO05D008266 1.8e-08 63.2 69 50.7
Medtr1g040905 Medicago truncatula HOM05D006636 ORTHO05D008266 2.3e-08 62.8 64 57.8
GSVIVG01018087001 Vitis vinifera HOM05D006636 ORTHO05D008266 2.3e-08 62.8 41 65.9
Carub.0001s4194 Capsella rubella HOM05D006636 ORTHO05D008266 3.1e-08 62.4 43 62.8
Lj3g0021432 Lotus japonicus HOM05D006636 ORTHO05D008266 3.1e-08 62.4 43 72.1
Psat6g136920 Pisum sativum HOM05D006636 ORTHO05D008266 3.1e-08 62.4 43 72.1
TPR.G32796 Trifolium pratense HOM05D006636 ORTHO05D008266 3.1e-08 62.4 43 72.1
Psat4g201760 Pisum sativum HOM05D000716 ORTHO05D009512 5.2e-08 61.6 43 72.1
Psat4g152480 Pisum sativum HOM05D000716 ORTHO05D009512 1.2e-07 60.5 130 36.9
Ca_12203_v3 Cicer arietinum L. HOM05D006636 ORTHO05D008266 2.6e-07 59.3 43 67.4
TWI73G0386 Tripterygium wilfordii HOM05D006636 ORTHO05D008266 3.4e-07 58.9 43 67.4
TAR365G0562 Trochodendron aralioides HOM05D006636 ORTHO05D008266 3.4e-07 58.9 43 62.8
Psat4g152400 Pisum sativum HOM05D006636 ORTHO05D008266 5.8e-07 58.2 43 69.8
Zm00001eb116910 Zea mays HOM05D006636 ORTHO05D008266 7.5e-07 57.8 42 59.5
Os07g0181800 Oryza sativa ssp. japonica HOM05D006636 ORTHO05D008266 9.8e-07 57.4 42 59.5
GSVIVG01002945001 Vitis vinifera HOM05D006636 ORTHO05D008266 2.2e-06 56.2 54 46.3
Psat0s152g0080 Pisum sativum HOM05D006636 ORTHO05D008266 4.9e-06 55.1 42 66.7


User provided reference genes

Program Settings