Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 6.2e-174 614.0 303 100.0
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 1.5e-90 337.0 212 77.4
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 4.7e-89 332.0 205 77.6
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 8.0e-89 331.3 212 75.9
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 2.3e-88 329.7 212 75.9
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 2.0e-87 326.6 212 74.1
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 9.8e-87 324.3 203 75.4
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.7e-86 323.6 203 75.4
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 2.2e-86 323.2 208 74.0
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 4.9e-86 322.0 206 74.3
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 1.4e-85 320.5 201 75.6
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 1.7e-83 313.5 208 71.6
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 1.7e-83 313.5 203 72.4
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 3.0e-83 312.8 203 75.4
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 3.0e-83 312.8 203 75.4
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 1.9e-82 310.1 206 72.8
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 2.1e-81 306.6 205 74.1
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 3.6e-81 305.8 205 71.2
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 4.7e-81 305.4 201 73.6
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 2.3e-80 303.1 209 71.8
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 1.2e-79 300.8 201 72.1
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 7.5e-79 298.1 203 70.4
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 2.9e-78 296.2 200 73.0
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 4.9e-78 295.4 203 71.9
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 6.4e-78 295.0 200 71.0
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 1.1e-77 294.3 201 73.1
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 1.4e-77 293.9 201 73.1
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 1.9e-77 293.5 200 71.0
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.9e-77 293.5 200 71.0
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 2.4e-77 293.1 200 71.0
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 4.1e-77 292.4 200 70.5
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 4.1e-77 292.4 207 71.0
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 5.4e-77 292.0 203 70.0
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 2.7e-76 289.7 205 69.3
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 3.5e-76 289.3 202 71.8
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 4.6e-76 288.9 205 69.3
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 4.6e-76 288.9 202 70.3
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 1.3e-75 287.3 201 69.2
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.7e-75 287.0 203 69.5
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 3.0e-75 286.2 211 66.8
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 3.0e-75 286.2 201 69.2
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 5.0e-75 285.4 205 66.8
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 6.6e-75 285.0 185 73.0
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 6.6e-75 285.0 203 67.5
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 1.1e-74 284.3 205 69.3
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 1.1e-74 284.3 211 67.8
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 3.3e-74 282.7 203 68.5
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 3.3e-74 282.7 211 65.9
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 1.6e-73 280.4 203 66.0
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 2.8e-73 279.6 201 70.6
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 2.8e-73 279.6 204 67.6
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 3.6e-73 279.3 205 66.8
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 4.7e-73 278.9 207 66.7
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 4.7e-73 278.9 207 65.2
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 6.2e-73 278.5 203 69.0
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 1.8e-72 276.9 205 68.3
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 1.8e-72 276.9 205 68.3
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 1.8e-72 276.9 205 68.3
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 1.8e-72 276.9 205 68.3
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 1.8e-72 276.9 205 68.3
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 1.8e-72 276.9 203 66.0
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 3.1e-72 276.2 202 67.3
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 3.1e-72 276.2 202 67.3
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 4.0e-72 275.8 202 66.8
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 5.2e-72 275.4 202 67.3
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 6.8e-72 275.0 202 66.8
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 1.2e-71 274.2 202 67.3
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 1.2e-71 274.2 202 67.3
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 1.5e-71 273.9 203 66.0
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 1.5e-71 273.9 202 67.8
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 1.5e-71 273.9 206 64.1
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 4.4e-71 272.3 206 63.6
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 4.4e-71 272.3 201 65.2
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 7.5e-71 271.6 203 66.5
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 8.3e-70 268.1 203 65.5
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 1.4e-69 267.3 201 65.2
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.4e-69 267.3 202 66.8
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 1.4e-69 267.3 207 63.3
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 9.2e-69 264.6 201 67.7
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 1.2e-68 264.2 202 64.9
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 2.7e-68 263.1 203 64.0
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 3.5e-68 262.7 200 65.0
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 4.6e-68 262.3 203 64.0
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 4.6e-68 262.3 206 63.6
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 5.6e-66 255.4 219 59.8
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 1.2e-65 254.2 201 60.7
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 1.6e-65 253.8 153 79.7
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 3.6e-65 252.7 204 63.7
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 6.2e-65 251.9 203 62.6
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 6.2e-65 251.9 203 59.6
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 1.1e-64 251.1 209 62.7
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 1.1e-64 251.1 209 62.7
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 1.8e-64 250.4 203 61.1
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 3.1e-64 249.6 201 59.7
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 2.0e-63 246.9 204 61.3
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 3.4e-63 246.1 201 62.2
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 9.9e-63 244.6 205 61.5
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 9.9e-63 244.6 202 62.9
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 9.9e-63 244.6 205 60.5
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 9.9e-63 244.6 205 60.5
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 1.7e-62 243.8 205 59.0
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 6.4e-62 241.9 204 60.3
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 6.4e-62 241.9 202 62.4
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 8.4e-62 241.5 203 59.6
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 1.1e-61 241.1 205 60.0
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 1.9e-61 240.4 201 61.7
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 9.2e-61 238.0 211 58.3
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.2e-60 237.7 202 61.4
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 4.6e-60 235.7 207 57.0
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 6.0e-60 235.3 205 59.0
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 1.3e-59 234.2 205 56.6
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 2.3e-59 233.4 163 69.3
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 2.3e-59 233.4 201 53.2
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 5.1e-59 232.3 202 60.9
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 2.5e-58 229.9 205 58.0
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 4.3e-58 229.2 201 53.7
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 7.3e-58 228.4 202 57.9
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 4.7e-57 225.7 202 58.4
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 4.7e-57 225.7 202 58.4
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 4.4e-55 219.2 208 53.8
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 6.0e-52 208.8 201 56.2
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 8.7e-51 204.9 152 68.4
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 2.5e-50 203.4 170 63.5
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 7.3e-50 201.8 125 75.2
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 1.6e-49 200.7 166 62.0
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 5.3e-48 195.7 153 66.7
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 9.0e-48 194.9 203 50.7
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 9.9e-47 191.4 152 63.2
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.6e-41 174.1 202 51.5
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 1.1e-40 171.4 207 46.9
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 2.0e-39 167.2 120 67.5
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 9.3e-37 158.3 122 67.2
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 1.0e-35 154.8 120 64.2
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 1.4e-32 144.4 124 56.5
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 2.6e-31 140.2 202 44.6
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 2.3e-27 127.1 97 60.8
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 1.5e-26 124.4 85 68.2
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 2.5e-26 123.6 83 71.1
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 6.3e-17 92.4 190 38.4
AUR62007599 Chenopodium quinoa HOM05D003144 ORTHO05D003539 5.3e-08 62.8 139 28.8
HanXRQChr16g0530661 Helianthus annuus HOM05D003144 ORTHO05D003539 3.4e-07 60.1 153 32.7
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 1.7e-06 57.8 158 28.5
PGR102G0163 Punica granatum HOM05D003144 ORTHO05D003539 1.7e-06 57.8 135 28.1
AUR62004088 Chenopodium quinoa HOM05D003144 ORTHO05D003539 2.9e-06 57.0 161 27.3
CDE11G1071 Ceratophyllum demersum HOM05D003144 ORTHO05D003539 8.5e-06 55.5 143 25.2
HPP92_013478 Vanilla planifolia HOM05D003144 ORTHO05D003539 8.5e-06 55.5 130 30.8


User provided reference genes

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